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Robust and Accurate Multi-Tumor, Multi-Species, Multi-Labora

Robust and Accurate Multi-Tumor, Multi-Species, Multi-Labora

Christof Albert Bertram (ORCID: 0000-0002-2402-9997)
  • Grant DOI 10.55776/I6555
  • Funding program Principal Investigator Projects International
  • Status ongoing
  • Start April 1, 2024
  • End March 31, 2027
  • Funding amount € 314,055
  • Project website
  • E-mail

Weave: Österreich - Belgien - Deutschland - Luxemburg - Polen - Schweiz - Slowenien - Tschechien

Disciplines

Computer Sciences (80%); Medical-Theoretical Sciences, Pharmacy (10%); Veterinary Medicine (10%)

Keywords

    Mitosis detection, Computer-aided pathology, Machine Learning, Deep Learning, Dataset, Tumor

Abstract

Neoplasms are one of the most common causes of death in humans and animals. The decision for appropriate therapy is based in part on the histological examination of tumor samples, capturing various prognostic parameters. One of the most relevant histological parameters for assessing the prognosis of tumor patients is the number of mitotic figures (Mitotic Count) in histological tumor section. In recent years, computer-assisted measurement methods using artificial intelligence have gained significant interest as they are capable of improving the reproducibility and accuracy of the measurements of this prognostic test. However, AI algorithms are highly dependent on the data with which they were trained. Current datasets do not contain the necessary variability (in terms of tumor types, scanners, stains and tissue quality), so a broad application of these algorithms in diagnostic laboratories is currently not possible. Differences in image properties (known as domain shift) between laboratories create a significant drop in the performance of AI algorithms and thus a reliable cross-laboratory application is not possible. This research project has the primary goal of creating a large dataset for mitotic figures in histological tumor preparations, which will include a large number of different domains, i.e., tumor types, species (humans and animals), and laboratories. Innovative methods of database generation are used, which enable maximum quality of labels and an efficient workflow to incorporate as many samples as possible into the database. These data will enable us to develop and validate an algorithm that can be used in the diagnostic workflow of numerous laboratories and thus improve the treatment decision of tumor patients. The developed dataset will be made publicly available, allowing further use by researchers and diagnostic laboratories. The resulting data will also serve as the basis for a learning platform for pathologists, which will provide practical exercise opportunities for proper mitotic figure recognition and the use of image analysis algorithms as decision support in the histological assessment of tumor samples. Finally, we will extensively validate the developed algorithms and investigate the benefits and potential risks for prognostic computer-assisted decision- making.

Research institution(s)
  • Veterinärmedizinische Universität Wien - 54%
  • Medizinische Universität Wien - 46%
Project participants
  • Christopher Kaltenecker, Medizinische Universität Wien , associated research partner
International project participants
  • Robert Klopfleisch, Freie Universität Berlin - Germany
  • Marc Aubreville, Technische Hochschule Ingolstadt - Germany, international project partner

Research Output

  • 23 Citations
  • 5 Publications
Publications
  • 2024
    Title Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H&E slide analysis
    DOI 10.1038/s41598-024-77244-6
    Type Journal Article
    Author Ganz J
    Journal Scientific Reports
    Pages 26273
    Link Publication
  • 2025
    Title Is Self-supervision Enough?; In: Bildverarbeitung für die Medizin 2025 - Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025
    DOI 10.1007/978-3-658-47422-5_15
    Type Book Chapter
    Publisher Springer Fachmedien Wiesbaden
  • 2025
    Title Histologic Dataset of Normal and Atypical Mitotic Figures on Human Breast Cancer (AMi-Br); In: Bildverarbeitung für die Medizin 2025 - Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025
    DOI 10.1007/978-3-658-47422-5_25
    Type Book Chapter
    Publisher Springer Fachmedien Wiesbaden
  • 2025
    Title Comprehensive Dataset of Coarse Tumor Annotations for The Cancer Genome Atlas Breast Invasive Carcinoma; In: Bildverarbeitung für die Medizin 2025 - Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025
    DOI 10.1007/978-3-658-47422-5_56
    Type Book Chapter
    Publisher Springer Fachmedien Wiesbaden
  • 2024
    Title Domain generalization across tumor types, laboratories, and species — Insights from the 2022 edition of the Mitosis Domain Generalization Challenge
    DOI 10.1016/j.media.2024.103155
    Type Journal Article
    Author Aubreville M
    Journal Medical Image Analysis
    Pages 103155
    Link Publication

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