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GAT-1 VARIANTS IN EPILEPSY: MOLECULAR & RESCUE MECHANISMS

GAT-1 VARIANTS IN EPILEPSY: MOLECULAR & RESCUE MECHANISMS

Sonja Sucic (ORCID: 0000-0001-5136-8022)
  • Grant DOI 10.55776/P36574
  • Funding program Principal Investigator Projects
  • Status ongoing
  • Start December 1, 2022
  • End November 30, 2025
  • Funding amount € 402,854
  • E-mail

Disciplines

Computer Sciences (25%); Medical-Theoretical Sciences, Pharmacy (75%)

Keywords

    GABA transporter 1, Pharmacochaperoning, Epilepsy Variants, Neurons And Flies, Misfolding, Molecular Dynamics

Abstract

The human -aminobutyric acid (GABA) transporter-1 (hGAT-1) belongs to the solute carrier 6 (SLC6) gene family (member SLC6A1). Numerous point mutations in the hGAT-1 gene have been linked to epilepsy. The molecular mechanisms underlying this disease are currently unclear. Many mutations in other SLC6 family members are known to impair protein folding, causing their retention in the endoplasmic reticulum (ER) and precluding their delivery to the cell surface. Such misfolding events subsequently give rise to severe pathological conditions, e.g. folding-deficient variants of the dopamine transporter (DAT, SLC6A3) and the creatine transporter-1 (CRT-1, SLC6A8) trigger infantile/juvenile parkinsonism-dystonia and severe X- linked mental retardation, respectively. In some cases, folding defects can be corrected by treatment with pharmacological and/or chemical chaperones. Our preliminary data indicate that all of the epilepsy-linked mutations in hGAT-1 greatly reduce or completely abolish GABA uptake activity, and that a large proportion of these are absent from the cell surface due to GAT-1 protein folding defects. Some mutants appear to be properly trafficked to the cell surface, but nonetheless render the protein incapable of transport. Our aim is to elucidate the molecular basis of epilepsy triggered by GAT-1 variants and, in addition, assess the efficacy of diverse small molecules in their ability to rescue their cell surface expression and function. We plan to systematically examine and categorise the variants, using state-of the-art computer simulation models to study the structural effects of mutations at the atomic level, and use these discernments as a complimentary approach to guide for in-depth biochemical and pharmacological characterisation in vitro, in HEK293 cells, as well as in primary neuronal cultures. We are also the very first to examine these GAT-1 variants using Drosophila melanogaster as an animal model, to explore the effects of mutations on animal behaviour and molecular features of this debilitating disease. We will utilise the pharmacochaperoning approach to assess the efficacy of diverse small molecules in restoring the activity of misfolded variants, both in vitro (i.e. in HEK293 cells) and in vivo (i.e. in living flies). Taken together, this fundamental work will provide crucial new insights into (i) the molecular and structural basis of epilepsy in patients harbouring mutations in hGAT-1 and (ii) a proof-of principle that misfolded variants associated with epilepsy are amenable to rescue by pharmacochaperoning. This grants innovative therapeutic prospects for the treatment of the affected patients and justifies a rational search for additional compounds to remedy the epilepsy symptoms induced by (at least some) pathological mutations in the hGAT-1 gene.

Research institution(s)
  • Medizinische Universität Wien - 100%
Project participants
  • Harald H. Sitte, Medizinische Universität Wien , national collaboration partner

Research Output

  • 52 Citations
  • 9 Publications
Publications
  • 2024
    Title A transporter’s doom or destiny: SLC6A1 in health and disease, novel molecular targets and emerging therapeutic prospects
    DOI 10.3389/fnmol.2024.1466694
    Type Journal Article
    Author Shah N
    Journal Frontiers in Molecular Neuroscience
    Pages 1466694
    Link Publication
  • 2024
    Title Breaking the rules of SLC6 transporters: Export of the human creatine transporter-1 from the endoplasmic reticulum is supported by its N-terminus
    DOI 10.1111/jnc.16088
    Type Journal Article
    Author Ün D
    Journal Journal of Neurochemistry
    Pages 2007-2021
    Link Publication
  • 2023
    Title Drosophila melanogaster as a model for unraveling unique molecular features of epilepsy elicited by human GABA transporter 1 variants
    DOI 10.3389/fnins.2022.1074427
    Type Journal Article
    Author Kasture A
    Journal Frontiers in Neuroscience
    Pages 1074427
    Link Publication
  • 2022
    Title Cooperative Binding of Substrate and Ions Drives Forward Cycling of the Human Creatine Transporter-1
    DOI 10.3389/fphys.2022.919439
    Type Journal Article
    Author Farr C
    Journal Frontiers in Physiology
    Pages 919439
    Link Publication
  • 2023
    Title Interaction of GAT1 with sodium ions: from efficient recruitment to stabilisation of substrate and conformation
    DOI 10.1101/2023.10.10.561652
    Type Preprint
    Author Lazzarin E
    Pages 2023.10.10.561652
    Link Publication
  • 2023
    Title Probing binding and occlusion of substrate in the human creatine transporter-1 by computation and mutagenesis
    DOI 10.1002/pro.4842
    Type Journal Article
    Author Clarke A
    Journal Protein Science
    Link Publication
  • 2022
    Title Rescue of Misfolded Organic Cation Transporter 3 Variants
    DOI 10.3390/cells12010039
    Type Journal Article
    Author Angenoorth T
    Journal Cells
    Pages 39
    Link Publication
  • 2023
    Title A mechanism of uncompetitive inhibition of the serotonin transporter
    DOI 10.7554/elife.82641
    Type Journal Article
    Author Bhat S
    Journal eLife
    Link Publication
  • 2022
    Title Molecular and Clinical Repercussions of GABA Transporter 1 Variants Gone Amiss: Links to Epilepsy and Developmental Spectrum Disorders
    DOI 10.3389/fmolb.2022.834498
    Type Journal Article
    Author Fischer F
    Journal Frontiers in Molecular Biosciences
    Pages 834498
    Link Publication

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