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Prebiotic Evolution of Amino Acids and Peptides

Prebiotic Evolution of Amino Acids and Peptides

Bernd-Michael Rode (ORCID: )
  • Grant DOI 10.55776/P19334
  • Funding program Principal Investigator Projects
  • Status ended
  • Start February 1, 2007
  • End October 31, 2011
  • Funding amount € 171,654
  • Project website

Disciplines

Biology (10%); Chemistry (90%)

Keywords

    Chemical Evolution, Aminoacids, Peptides, Origin Of Life

Abstract Final report

Recent research on the prebiotic formation of precursor molecules of biomolecules relevant for the origin of life on earth has revealed that amino acids and their polymers, i.e. peptides and proteins, have probably played the primary role in the beginning of chemical evolution on the primordial earth. Based on previous work by the applicant the present project aims at a detailed investigation of the 2 main steps of peptide evolution, the production of amino acids from atmospheric compounds under various conditions, and the formation of their polymers under the environmental conditions assumed for the primitive earth on the basis of recent geochemical research. First experiments of the applicant have proven that amino acids can be produced by electrical discharges from a neutral atmosphere consisting of nitrogen, carbon dioxide and water vapour, which is the composition generally assumed nowadays for the secondary earth atmosphere 4 billion years ago. In a series of experiments, the composition of this atmosphere will be varied, including also other compounds assumed to have been present, in particular suphur dioxide, and the aqueous phase under this atmosphere, mimicking the primordial sea, will also be varied with respect to its content of inorganic conpounds such as salts and minerals. Further, the possible formation of precursor molecules for proteins under different atmospheric conditions, e.g. nitrogen-methane atmosphere over ice as found on Titan under electric discharges will be investigated. The analysis of amino acids thus formed under varying conditions should deliver conclusive data, which `spectrum` of amino acids could be expected as the foundation of chemical evolution of an emerging `amino acid world`, either under terrestric or extraterrestric conditions. Following up the numerous aspects of the Salt-Induced Peptide Formation (SIPF) reaction and recent discoveries related to this reaction providing the most plausible way for prebiotic peptide evolution, the possible role of this reaction in the origin of bio-homochirality and the catalytic influence of some prebiotically available compounds on peptide formation will be another focus of the investigations in this project. The stability of formed peptides under various environmental conditions such as temperature and the presence of inorganic materials, in particular of clay minerals, will be studied to evaluate the sustainability of the evolutionary processes and mechanisms of chain elongation leading to higher polymers. Finally, quantum mechanical calculations at ab initio level will be employed to study the relative stability of fragment structures in the gas phase and of the Cu(II) complexes central to the peptide formation in the SIPF reaction.

Recent research on the prebiotic formation of precursor molecules of biomolecules relevant for the origin of life on earth has revealed that amino acids and their polymers, i.e. peptides and proteins, have probably played the primary role in the beginning of chemical evolution on the primordial earth. Based on previous work by the applicant the present project aims at a detailed investigation of the 2 main steps of peptide evolution, the production of amino acids from atmospheric compounds under various conditions, and the formation of their polymers under the environmental conditions assumed for the primitive earth on the basis of recent geochemical research. First experiments of the applicant have proven that amino acids can be produced by electrical discharges from a neutral atmosphere consisting of nitrogen, carbon dioxide and water vapour, which is the composition generally assumed nowadays for the secondary earth atmosphere 4 billion years ago. In a series of experiments, the composition of this atmosphere will be varied, including also other compounds assumed to have been present, in particular suphur dioxide, and the aqueous phase under this atmosphere, mimicking the primordial sea, will also be varied with respect to its content of inorganic conpounds such as salts and minerals. Further, the possible formation of precursor molecules for proteins under different atmospheric conditions, e.g. nitrogen-methane atmosphere over ice as found on Titan under electric discharges will be investigated. The analysis of amino acids thus formed under varying conditions should deliver conclusive data, which `spectrum` of amino acids could be expected as the foundation of chemical evolution of an emerging `amino acid world`, either under terrestric or extraterrestric conditions. Following up the numerous aspects of the Salt-Induced Peptide Formation (SIPF) reaction and recent discoveries related to this reaction providing the most plausible way for prebiotic peptide evolution, the possible role of this reaction in the origin of bio-homochirality and the catalytic influence of some prebiotically available compounds on peptide formation will be another focus of the investigations in this project. The stability of formed peptides under various environmental conditions such as temperature and the presence of inorganic materials, in particular of clay minerals, will be studied to evaluate the sustainability of the evolutionary processes and mechanisms of chain elongation leading to higher polymers. Finally, quantum mechanical calculations at ab initio level will be employed to study the relative stability of fragment structures in the gas phase and of the Cu(II) complexes central to the peptide formation in the SIPF reaction.

Research institution(s)
  • Universität Innsbruck - 100%
International project participants
  • Jesus Martinez Frias, Spanish National Research Council - Spain

Research Output

  • 365 Citations
  • 12 Publications
Publications
  • 2012
    Title The Origin of First Peptides on Earth: From Amino Acids to Homochiral Biomolecules
    DOI 10.1007/978-94-007-2941-4_25
    Type Book Chapter
    Author Jakschitz T
    Publisher Springer Nature
    Pages 469-489
  • 2012
    Title Computational study of the cerium(III) ion in aqueous environment
    DOI 10.1016/j.cplett.2012.05.023
    Type Journal Article
    Author Lutz O
    Journal Chemical Physics Letters
    Pages 50-53
    Link Publication
  • 2010
    Title Arginine in the salt-induced peptide formation reaction: enantioselectivity facilitated by glycine, l- and d-histidine
    DOI 10.1007/s00726-010-0479-5
    Type Journal Article
    Author Li F
    Journal Amino Acids
    Pages 579-585
  • 2010
    Title Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+ and Zn2+) and water coordination on the structure and properties of l-histidine and zwitterionic l-histidine
    DOI 10.1007/s00726-010-0573-8
    Type Journal Article
    Author Remko M
    Journal Amino Acids
    Pages 1309-1319
  • 2008
    Title The catalytic effect of l- and d-histidine on alanine and lysine peptide formation
    DOI 10.1016/j.jinorgbio.2008.07.010
    Type Journal Article
    Author Fitz D
    Journal Journal of Inorganic Biochemistry
    Pages 2097-2102
  • 2008
    Title Effect of Metal Ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and Water Coordination on the Structure and Properties of l-Arginine and Zwitterionic l-Arginine
    DOI 10.1021/jp801418h
    Type Journal Article
    Author Remko M
    Journal The Journal of Physical Chemistry A
    Pages 7652-7661
  • 2009
    Title Catalytic effects of histidine enantiomers and glycine on the formation of dileucine and dimethionine in the salt-induced peptide formation reaction
    DOI 10.1007/s00726-009-0249-4
    Type Journal Article
    Author Li F
    Journal Amino Acids
    Pages 287-294
  • 2007
    Title Methionine peptide formation under primordial earth conditions
    DOI 10.1016/j.jinorgbio.2007.12.020
    Type Journal Article
    Author Li F
    Journal Journal of Inorganic Biochemistry
    Pages 1212-1217
  • 2012
    Title Isoleucine as a possible bridge between exogenous delivery and terrestrial enhancement of homochirality
    DOI 10.1007/s00726-012-1396-6
    Type Journal Article
    Author Li F
    Journal Amino Acids
    Pages 725-732
  • 2011
    Title Hydration of highly charged ions
    DOI 10.1016/j.cplett.2011.05.060
    Type Journal Article
    Author Hofer T
    Journal Chemical Physics Letters
    Pages 139-145
    Link Publication
  • 2011
    Title Effect of metal Ions (Ni2+, Cu2+ and Zn2+) and water coordination on the structure of L-phenylalanine, L-tyrosine, L-tryptophan and their zwitterionic forms
    DOI 10.1007/s00894-011-1000-0
    Type Journal Article
    Author Remko M
    Journal Journal of Molecular Modeling
    Pages 3117-3128
    Link Publication
  • 2011
    Title Selective adsorption and chiral amplification of amino acids in vermiculite clay-implications for the origin of biochirality
    DOI 10.1039/c0cp01388a
    Type Journal Article
    Author Fraser D
    Journal Physical Chemistry Chemical Physics
    Pages 831-838
    Link Publication

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