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Liquid-liquid phase separation in biology

Liquid-liquid phase separation in biology

Bojan Zagrovic (ORCID: 0000-0003-3814-3675)
  • Grant DOI 10.55776/DOC112
  • Funding program doc.funds
  • Status ongoing
  • Start October 1, 2021
  • End September 30, 2026
  • Funding amount € 1,608,237

Disciplines

Biology (75%); Physics, Astronomy (25%)

Keywords

    Liquid-Liquid Phase Separation, Biomolecular Condensates, Intrinsically Disordered Proteins, Soft-Matter Physics, Structural Biology, Cell Biology

Abstract

One of the central questions in all of biology is understanding how the cell is organized in terms of space and time. Recently, it has become clear that many key cellular compartments, assemble spontaneously when proteins, nucleic acids and other biomolecules condense together into phase- separated, liquid droplets. The biomolecular condensates formed in this way regulate many important biological processes such as transcription or ribosome biogenesis and have also been associated with different pathologies including neurodegenerative diseases and cancer. Coordinated by Prof. Dr. Bojan Zagrovic (https://www.maxperutzlabs.ac.at/research/research-groups/zagrovic) and involving 8 faculty from the University of Vienna, Medical University of Vienna, Institute of Molecular Biotechnology (IMBA) and Institute of Molecular Pathology (IMP), the ELLIPSE doctoral program will educate the next generation of multidisciplinary scientists who will be will be versed both in the practice of structural and cell biology and quantitative details of soft-matter theory and simulations, a union simply demanded by the highly complex phenomenon of biomolecular liquid-liquid phase separation. The ELLIPSE doctoral students will be embedded in the Vienna Biocenter PhD Program (https:/raining.vbc.ac.at/phd-program), one of Europes oldest and largest molecular biology PhD programs and, together with the involved faculty, will create a powerful hub for biological phase- separation research. Importantly, the four host institutions will support the ELLIPSE program through financial and in-kind contributions, including access to world-class infrastructure, almost doubling the value of the project. The phenomenon of liquid-liquid phase separation has taken the world of biology by storm, creating a need for crosstalk between biology and physics. The added value of ELLIPSE arises precisely from creating an educational and research framework that will make this crosstalk possible and enable a deep, rigorous understanding of a key biological phenomenon.

Consortium
  • Anton Goloborodko, IMBA – Institut für Molekulare Biotechnologie GmbH
    consortium member (01.10.2021 -)
  • Bojan Zagrovic, Universität Wien
    consortium member (01.10.2021 -)
  • Gülsün Elif Karagöz, Medizinische Universität Wien
    consortium member (01.10.2021 -)
  • Ivan Yudushkin, Universität Wien
    consortium member (01.10.2021 -)
  • Kristina Djinovic-Carugo, Universität Wien
    consortium member (01.10.2021 -)
  • Robert Konrat, Universität Wien
    consortium member (01.10.2021 -)
  • Sofia Kantorovich, Universität Wien
    consortium member (01.10.2021 -)
  • Tim Clausen, Institut für Molekulare Pathologie - IMP
    consortium member (01.10.2021 -)
Research institution(s)
  • Universität Wien

Research Output

  • 61 Citations
  • 7 Publications
  • 4 Datasets & models
Publications
  • 2025
    Title TRIM52 maintains cellular fitness and is under tight proteolytic control by multiple giant E3 ligases
    DOI 10.1038/s41467-025-59129-y
    Type Journal Article
    Author Shulkina A
    Journal Nature Communications
    Pages 3894
    Link Publication
  • 2024
    Title Architecture of the UBR4 complex, a giant E4 ligase central to eukaryotic protein quality control
    DOI 10.1101/2024.12.18.629163
    Type Preprint
    Author Grabarczyk D
    Pages 2024.12.18.629163
    Link Publication
  • 2024
    Title TRIM52 is a primate-specific player in the DNA repair process under tight proteolytic control by a triad of giant E3 ligases
    DOI 10.1101/2024.05.16.594269
    Type Preprint
    Author Shulkina A
    Pages 2024.05.16.594269
    Link Publication
  • 2024
    Title Molecular insight into substrate targeting and ubiquitination by Ube2o
    Type PhD Thesis
    Author Kordic, Darja
    Link Publication
  • 2023
    Title Structural basis for regulation of apoptosis and autophagy by BIRC6 and SMAC
    Type PhD Thesis
    Author Ehrmann, Julian Friedrich
    Link Publication
  • 2023
    Title Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex
    DOI 10.1126/science.ade8873
    Type Journal Article
    Author Ehrmann J
    Journal Science
    Pages 1117-1123
    Link Publication
  • 2022
    Title Structural basis of how the BIRC6/SMAC complex regulates apoptosis and autophagy
    DOI 10.1101/2022.08.30.505823
    Type Preprint
    Author Ehrmann J
    Pages 2022.08.30.505823
    Link Publication
Datasets & models
  • 2023 Link
    Title 8AUW
    DOI 10.2210/pdb8auw/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2023 Link
    Title 8AUK
    DOI 10.2210/pdb8auk/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2023 Link
    Title 8ATX
    DOI 10.2210/pdb8atx/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2023 Link
    Title 8ATU
    DOI 10.2210/pdb8atu/pdb
    Type Database/Collection of data
    Public Access
    Link Link

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