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Nature-derived peptide libraries for GPCR ligand discovery

Nature-derived peptide libraries for GPCR ligand discovery

Christian W. Gruber (ORCID: 0000-0001-6060-7048)
  • Grant DOI 10.55776/P32109
  • Funding program Principal Investigator Projects
  • Status ended
  • Start May 1, 2019
  • End February 29, 2024
  • Funding amount € 220,001
  • Project website
  • E-mail

Disciplines

Chemistry (20%); Medical-Theoretical Sciences, Pharmacy (80%)

Keywords

    Peptidomics, Gpcr, Peptide, Drug Discovery, Cyclotide

Abstract Final report

Bioactive peptides occur in all domains of life. Cyclotides are plant peptides comprising a circular backbone and three interlocked disulfide bonds that confer them with exceptional stability. This unique structure makes them interesting pharmaceutical tools for the development of orally bioavailable peptide-based drugs. Cyclotides exhibit several intrinsic biological activities, but the detailed molecular mechanisms of their effects have been studied in very few cases. For example, we have recently demonstrated that the cyclotide kalata B7 interacts with the human oxytocin and vasopressin V1a-receptors, belonging to the family of G protein-coupled receptors (GPCRs). These findings offer the unique opportunity to test whether cyclotides can target other GPCRs. Our scientific project aims to discover cyclotides and to use these nature-derived molecules as templates to design novel ligands for GPCRs; these transmembrane proteins constitute the most important class of therapeutic drug targets. To reach our objectives, we combine state-of-the-art pharmacological, chemical and bioanalytical approaches. If successful, these findings offer starting points for drug development of circular peptides to clinical relevant GPCRs.

Our project, entitled "Nature-derived peptides as libraries for GPCR ligand discovery," focuses on the exploration of circular peptides from plants to develop novel ligands for G protein-coupled receptors (GPCRs). This category of receptors is pivotal in therapeutic drug targeting. Our collaborative efforts blend advanced pharmacological, chemical, and bioanalytical methods. Significant progress includes establishing peptide-based GPCR ligands from diverse plant extracts and designing peptides that modulate the activity of key receptors like kappa-opioid and cannabinoid receptors. Notably, our research has led to the discovery of novel peptide ligands with potential therapeutic applications as analgesics or for autoimmune disorders, showcasing the immense potential of nature-derived molecules in medical science.

Research institution(s)
  • Medizinische Universität Wien - 100%
International project participants
  • David J. Craik, University of Queensland - Australia
  • Liliane Schoofs, Katholieke Universiteit Leuven - Belgium

Research Output

  • 3716 Citations
  • 35 Publications
  • 1 Patents
  • 1 Spinouts
  • 1 Methods & Materials
  • 1 Datasets & models
  • 4 Disseminations
  • 6 Scientific Awards
Publications
  • 2024
    Title Discovery and development of macrocyclic peptide modulators of the cannabinoid 2 receptor
    DOI 10.1016/j.jbc.2024.107330
    Type Journal Article
    Author Tomaševic N
    Journal Journal of Biological Chemistry
    Pages 107330
    Link Publication
  • 2024
    Title Plant-Derived Peptides: (Neglected) Natural Products for Drug Discovery #
    DOI 10.1055/a-2219-9724
    Type Journal Article
    Author Gruber C
    Journal Planta Medica
    Pages 627-630
    Link Publication
  • 2024
    Title Flipping the GPCR Switch: Structure-Based Development of Selective Cannabinoid Receptor 2 Inverse Agonists
    DOI 10.1021/acscentsci.3c01461
    Type Journal Article
    Author Kosar M
    Journal ACS Central Science
    Pages 956-968
    Link Publication
  • 2024
    Title Discovery and development of macrocyclic peptide modulators of the cannabinoid 2 receptor
    DOI 10.26434/chemrxiv-2024-15qkc
    Type Preprint
    Author Tomasevic N
    Link Publication
  • 2024
    Title Chemical synthesis of grafted cyclotides using a “plug and play” approach
    DOI 10.1039/d4cb00008k
    Type Journal Article
    Author Koehbach J
    Journal RSC Chemical Biology
    Pages 567-571
    Link Publication
  • 2023
    Title Development of Melanocortin 4 Receptor Agonists by Exploiting Animal-Derived Macrocyclic, Disulfide-Rich Peptide Scaffolds
    DOI 10.1021/acsptsci.3c00090
    Type Journal Article
    Author Muratspahic´ E
    Journal ACS Pharmacology & Translational Science
    Pages 1373-1381
    Link Publication
  • 2023
    Title Peptidomics
    DOI 10.1038/s43586-023-00205-2
    Type Journal Article
    Author Hellinger R
    Journal Nature Reviews Methods Primers
    Pages 25
    Link Publication
  • 2023
    Title Peptide modulators of cell migration: Overview, applications and future development
    DOI 10.1016/j.drudis.2023.103554
    Type Journal Article
    Author Gattringer J
    Journal Drug Discovery Today
    Pages 103554
    Link Publication
  • 2023
    Title Multiplexed neuropeptide mapping in ant brains integrating microtomography and three-dimensional mass spectrometry imaging
    DOI 10.1093/pnasnexus/pgad144
    Type Journal Article
    Author Geier B
    Journal PNAS Nexus
    Link Publication
  • 2021
    Title Genome Mining-Based Discovery of Blenny Fish-Derived Peptides Targeting the Mouse ?-Opioid Receptor
    DOI 10.3389/fphar.2021.773029
    Type Journal Article
    Author Muratspahic E
    Journal Frontiers in Pharmacology
    Pages 773029
    Link Publication
  • 2021
    Title Discovery and design of cyclic nature-derived peptides targeting -opioid receptor
    Type PhD Thesis
    Author Edin Muratspahic
  • 2021
    Title Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides
    DOI 10.1021/acschembio.1c00524
    Type Journal Article
    Author Hellinger R
    Journal ACS Chemical Biology
    Pages 2373-2386
    Link Publication
  • 2020
    Title Isolation of Cysteine-Rich Peptides from Citrullus colocynthis
    DOI 10.3390/biom10091326
    Type Journal Article
    Author Shahin-Kaleybar B
    Journal Biomolecules
    Pages 1326
    Link Publication
  • 2020
    Title Harnessing cyclotides to design and develop novel peptide GPCR ligands
    DOI 10.1039/d0cb00062k
    Type Journal Article
    Author Muratspahic E
    Journal RSC Chemical Biology
    Pages 177-191
    Link Publication
  • 2020
    Title The oxytocin receptor signalling system and breast cancer: a critical review
    DOI 10.1038/s41388-020-01415-8
    Type Journal Article
    Author Liu H
    Journal Oncogene
    Pages 5917-5932
    Link Publication
  • 2022
    Title Discovery of the cyclotide caripe 11 as a ligand of the cholecystokinin-2 receptor
    DOI 10.1038/s41598-022-13142-z
    Type Journal Article
    Author Taghizadeh M
    Journal Scientific Reports
    Pages 9215
    Link Publication
  • 2022
    Title Ipecac root extracts and isolated circular peptides differentially suppress inflammatory immune response characterised by proliferation, activation and degranulation capacity of human lymphocytes in vitro
    DOI 10.1016/j.biopha.2022.113120
    Type Journal Article
    Author Falanga C
    Journal Biomedicine & Pharmacotherapy
    Pages 113120
    Link Publication
  • 2022
    Title Multiplexed neuropeptide mapping in ant brains integrating microtomography and 3D mass spectrometry imaging
    DOI 10.1101/2022.11.02.514707
    Type Preprint
    Author Geier B
    Pages 2022.11.02.514707
    Link Publication
  • 2019
    Title Nature-Derived Peptides: A Growing Niche for GPCR Ligand Discovery
    DOI 10.1016/j.tips.2019.03.004
    Type Journal Article
    Author Muratspahic E
    Journal Trends in Pharmacological Sciences
    Pages 309-326
    Link Publication
  • 2019
    Title I8-arachnotocin–an arthropod-derived G protein-biased ligand of the human vasopressin V2 receptor
    DOI 10.1038/s41598-019-55675-w
    Type Journal Article
    Author Duerrauer L
    Journal Scientific Reports
    Pages 19295
    Link Publication
  • 2023
    Title Design, synthesis, conformational analysis, and biological activity of C1-to-C6 1,4- and 4,1-disubstituted 1H-[1,2,3]triazol-1-yl-bridged oxytocin analogues
    DOI 10.6084/m9.figshare.24182237.v1
    Type Other
    Author Larregola M
    Link Publication
  • 2023
    Title Design, synthesis, conformational analysis, and biological activity of C1-to-C6 1,4- and 4,1-disubstituted 1H-[1,2,3]triazol-1-yl-bridged oxytocin analogues
    DOI 10.6084/m9.figshare.24182237
    Type Other
    Author Larregola M
    Link Publication
  • 2023
    Title Design and structural validation of peptide–drug conjugate ligands of the kappa-opioid receptor
    DOI 10.1038/s41467-023-43718-w
    Type Journal Article
    Author Muratspahic E
    Journal Nature Communications
    Pages 8064
    Link Publication
  • 2023
    Title Development of a Selective Peptide ?-Opioid Receptor Antagonist by Late-Stage Functionalization with Cysteine Staples
    DOI 10.1021/acs.jmedchem.3c00426
    Type Journal Article
    Author Muratspahic´ E
    Journal Journal of Medicinal Chemistry
    Pages 11843-11854
    Link Publication
  • 2023
    Title Flipping the GPCR Switch: Structure-Based Development of Selective Cannabinoid Receptor 2 Inverse Agonists
    DOI 10.26434/chemrxiv-2023-w3ggn
    Type Preprint
    Author Carreira E
  • 2023
    Title Design, synthesis, conformational analysis, and biological activity of Ca1-to-Ca6 1,4- and 4,1-disubstituted 1H-[1,2,3]triazol-1-yl-bridged oxytocin analogues
    DOI 10.1080/14756366.2023.2254019
    Type Journal Article
    Author Nuti F
    Journal Journal of Enzyme Inhibition and Medicinal Chemistry
    Pages 2254019
    Link Publication
  • 2021
    Title Isolation and functional diversity of Bowman–Birk type serine proteinase inhibitors from Hyacinthus orientalis
    DOI 10.1042/bcj20201005
    Type Journal Article
    Author Aoki-Shioi N
    Journal Biochemical Journal
    Pages 1287-1301
    Link Publication
  • 2021
    Title Cyclotides from Brazilian Palicourea sessilis and Their Effects on Human Lymphocytes
    DOI 10.1021/acs.jnatprod.0c01069
    Type Journal Article
    Author Pinto M
    Journal Journal of Natural Products
    Pages 81-90
    Link Publication
  • 2021
    Title Nature-inspired dimerization as a strategy to modulate neuropeptide pharmacology exemplified with vasopressin and oxytocin
    DOI 10.1039/d0sc05501h
    Type Journal Article
    Author Dekan Z
    Journal Chemical Science
    Pages 4057-4062
    Link Publication
  • 2021
    Title Natural products in drug discovery: advances and opportunities
    DOI 10.1038/s41573-020-00114-z
    Type Journal Article
    Author Atanasov A
    Journal Nature Reviews Drug Discovery
    Pages 200-216
    Link Publication
  • 2022
    Title Ipecac root extracts and isolated circular peptides differentially suppress inflammatory immune response characterised by proliferation, activation and degranulation capacity of human lymphocytes in vitro
    DOI 10.5451/unibas-ep88523
    Type Other
    Author Falanga
    Link Publication
  • 2021
    Title Plant-Derived Cyclotides Modulate ?-Opioid Receptor Signaling
    DOI 10.1021/acs.jnatprod.1c00301
    Type Journal Article
    Author Muratspahic´ E
    Journal Journal of Natural Products
    Pages 2238-2248
    Link Publication
  • 2021
    Title Design of a Stable Cyclic Peptide Analgesic Derived from Sunflower Seeds that Targets the ?-Opioid Receptor for the Treatment of Chronic Abdominal Pain
    DOI 10.1021/acs.jmedchem.1c00158
    Type Journal Article
    Author Muratspahic´ E
    Journal Journal of Medicinal Chemistry
    Pages 9042-9055
    Link Publication
  • 2021
    Title Cyclotides Isolated From Violet Plants of Cameroon Are Inhibitors of Human Prolyl Oligopeptidase
    DOI 10.3389/fphar.2021.707596
    Type Journal Article
    Author Gattringer J
    Journal Frontiers in Pharmacology
    Pages 707596
    Link Publication
  • 2020
    Title Discovery of a Beetroot Protease Inhibitor to Identify and Classify Plant-Derived Cystine Knot Peptides
    DOI 10.1021/acs.jnatprod.0c00648
    Type Journal Article
    Author Retzl B
    Journal Journal of Natural Products
    Pages 3305-3314
    Link Publication
Patents
  • 2023
    Title Selective cyclized peptide kappa-opioid receptor ligands
    Type Patent / Patent application
    Website Link
Spinouts
  • 2024 Link
    Title Pepdura
    Link Link
Methods & Materials
  • 2023 Link
    Title computational design method
    Type Technology assay or reagent
    Public Access
    Link Link
Datasets & models
  • 2024 Link
    Title CCDC 2310248: Experimental Crystal Structure Determination
    DOI 10.5517/ccdc.csd.cc2hk047
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 0
    Title Press release MUW
    Type A press release, press conference or response to a media enquiry/interview
  • 0
    Title PRess release MUW
    Type A press release, press conference or response to a media enquiry/interview
  • 0
    Title Radio Interview, Science Podcast
    Type A press release, press conference or response to a media enquiry/interview
  • 0
    Title VHS Vortrag
    Type A talk or presentation
Scientific Awards
  • 2023
    Title Best Poster
    Type Poster/abstract prize
    Level of Recognition National (any country)
  • 2022
    Title Invited speaker
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title Schrödinger Fellowship
    Type Prestigious/honorary/advisory position to an external body
    Level of Recognition Continental/International
  • 2022
    Title STMS
    Type Research prize
    Level of Recognition Continental/International
  • 2021
    Title Editor
    Type Appointed as the editor/advisor to a journal or book series
    Level of Recognition Continental/International
  • 2019
    Title Invited speaker
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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(Entrance Wiesingerstraße 4)
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office(at)fwf.ac.at
+43 1 505 67 40

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