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CRISPR/Cas9 genome engineering to dissect MPN pathogenesis

CRISPR/Cas9 genome engineering to dissect MPN pathogenesis

Andreas Reinisch (ORCID: 0000-0001-9333-7689)
  • Grant DOI 10.55776/P32783
  • Funding program Principal Investigator Projects
  • Status ended
  • Start January 7, 2020
  • End July 6, 2024
  • Funding amount € 403,395

Disciplines

Biology (20%); Clinical Medicine (50%); Medical-Theoretical Sciences, Pharmacy (20%); Medical Biotechnology (10%)

Keywords

    JAK2 V617F, Myeloproliferative Neoplasm, CRISPR/Cas9, Xenotransplantation, Genome Engineering

Abstract Final report

Myeloproliferative neoplasms (MPNs) are a set of chronic hematopoietic neoplasms characterized by the aberrant proliferation of one or more myeloid lineages and progressive bone marrow fibrosis. Depending on the cell type affected, the disease is called polycythemia vera (PV, red blood cells), essential thrombocythemia (ET, platelets), or primary myelofibrosis (MF, various lineages affected with an additional increase in BM fibrosis). For the majority of patients with PV and half of those with ET and MF, a single point mutation in the gene JAK2 (Janus kinase 2) resulting in JAK2V617F could be identified as a common genetic basis. Physiologically, JAK2 is an integral part of signal transduction within cells. JAK2V617F is rendered constitutively active and results in cytokine-independent growth of mutant cells. Up to now, it is not known how a single mutation can cause several clinically distinct phenotypes. Although substantial efforts have been devoted towards the characterization of JAK2V617F mutations in transgenic murine pathophysiological processes are different between mouse and human hematopoietic stem cells, and therefor insights gained from mouse models can unfortunately not be directly translated to the clinics. Our proposal aims to elucidate the role of JAK2V617F in human hematopoietic cells in order to better understand its contribution to MPN development. We propose to use CRISPR-Cas9 technology to prospectively introduce the JAK2V617F-mutation into human hematopoietic stem and progenitor cells and investigate the functional consequences in vitro. Furthermore, we will employ our recently developed novel mouse xenotransplantation model (transplantation of human cells into immune-compromised mice) that allows for the first time to investigate genetically modified human hematopoietic cells in vivo. Our result will help to shed light on the role of JAK2V617F and the molecular mechanisms involved in MPN development. Our data will contribute to the development of novel therapeutic strategies for the treatment of MPN patients.

Our research project aimed to advance the understanding of myeloproliferative neoplasms (MPNs), a group of chronic blood cancers caused by genetic mutations in blood stem cells. These conditions lead to the overproduction of blood cells and can result in serious health issues such as blood clots, bleeding, and progression to acute leukemia. We focused on studying CALR (calreticulin) mutations, which are genetic driver lesions in certain types of MPNs like essential thrombocythemia (ET) and primary myelofibrosis (PMF). We employed cutting-edge CRISPR/Cas9 technology to introduce CALR mutations into healthy human blood stem cells. This approach allowed us to study how these mutations affect cell behavior and contribute to disease development. Our experiments revealed that CALR mutations enable blood stem cells to grow independently of normal growth signals, leading to an overproduction of blood cell types such as megakaryocytes and platelets. In animal models, these mutated cells demonstrated increased survival and growth, mimicking key features of MPNs such as enlarged spleens and bone marrow fibrosis. Additionally, we discovered that CALR mutations activate specific cellular pathways related to stress responses and protein processing. This insight opens new possibilities for targeted treatments by identifying vulnerabilities in these pathways. Our research suggests that existing drugs could potentially be repurposed to treat patients with CALR-mutant MPNs, offering new avenues for more effective therapies. Beyond these findings, our project contributed to broader scientific advancements. We published detailed protocols for our gene-editing techniques, enabling other researchers to replicate our methods. We also explored other genetic mutations linked to blood cancers, further expanding our understanding of these diseases. Overall, this project not only deepened scientific knowledge of MPNs but also paved the way for developing targeted treatments that could improve outcomes for patients affected by these challenging conditions. By focusing on CALR mutations, we have provided valuable insights into the mechanisms driving MPNs and highlighted potential therapeutic strategies that could benefit patients in the future.

Research institution(s)
  • Medizinische Universität Graz - 100%
Project participants
  • Albert Wölfler, Medizinische Universität Graz , national collaboration partner
  • Christine Beham-Schmid, Medizinische Universität Graz , national collaboration partner
  • Ellen Heitzer, Medizinische Universität Graz , national collaboration partner
  • Heinz Sill, Medizinische Universität Graz , national collaboration partner
International project participants
  • Matthew Porteus, Stanford University School of Medicine - USA
  • Ravindra Majeti, Stanford University School of Medicine - USA

Research Output

  • 201 Citations
  • 20 Publications
  • 1 Methods & Materials
  • 2 Datasets & models
  • 1 Disseminations
  • 2 Scientific Awards
  • 3 Fundings
Publications
  • 2023
    Title Thrombopoietin-independent Megakaryocyte Differentiation of Hematopoietic Progenitor Cells from Patients with Myeloproliferative Neoplasms.
    DOI 10.21769/bioprotoc.4592
    Type Journal Article
    Author Foßelteder J
    Journal Bio-protocol
  • 2020
    Title TP53 mutated AML subclones exhibit engraftment in a humanized bone marrow ossicle mouse model
    DOI 10.1007/s00277-020-03920-y
    Type Journal Article
    Author Pabst G
    Journal Annals of Hematology
    Pages 653-655
    Link Publication
  • 2021
    Title Additional file 1 of Micro-RNA-125a mediates the effects of hypomethylating agents in chronic myelomonocytic leukemia
    DOI 10.6084/m9.figshare.13535851.v1
    Type Other
    Author Berg J
    Link Publication
  • 2021
    Title Additional file 1 of Micro-RNA-125a mediates the effects of hypomethylating agents in chronic myelomonocytic leukemia
    DOI 10.6084/m9.figshare.13535851
    Type Other
    Author Berg J
    Link Publication
  • 2024
    Title Measurable Residual Disease Detection in Acute Myeloid Leukemia: Current Challenges and Future Directions
    DOI 10.3390/biomedicines12030599
    Type Journal Article
    Author Moritz J
    Journal Biomedicines
    Pages 599
    Link Publication
  • 2025
    Title Engineered cytokine-expressing MSCs support ex vivo culture of human HSPCs and AML cells
    DOI 10.1016/j.exphem.2025.104790
    Type Journal Article
    Author Foßelteder J
    Journal Experimental Hematology
    Pages 104790
  • 2021
    Title Targeted regulation of transcription in primary cells using CRISPRa and CRISPRi
    DOI 10.1101/gr.275607.121
    Type Journal Article
    Author Jensen T
    Journal Genome Research
    Pages 2120-2130
    Link Publication
  • 2021
    Title EZH2 inactivation in RAS-driven myeloid neoplasms hyperactivates RAS-signaling and increases MEK inhibitor sensitivity
    DOI 10.1038/s41375-021-01161-0
    Type Journal Article
    Author Berg J
    Journal Leukemia
    Pages 1521-1526
    Link Publication
  • 2021
    Title miR-23a mediates resistance to hypomethylating agents in myeloid neoplasms
    DOI 10.1007/s00277-021-04598-6
    Type Journal Article
    Author Mayer M
    Journal Annals of Hematology
    Pages 2845-2847
    Link Publication
  • 2022
    Title Targeting human CALR-mutated MPN progenitors with a neoepitope-directed monoclonal antibody
    DOI 10.15252/embr.202152904
    Type Journal Article
    Author Tvorogov D
    Journal The EMBO Reports
    Link Publication
  • 2022
    Title The Cell Type–Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2-Mutant Preleukemia
    DOI 10.1158/2643-3230.bcd-21-0143
    Type Journal Article
    Author Nakauchi Y
    Journal Blood Cancer Discovery
    Pages 346-367
    Link Publication
  • 2023
    Title Engineering Oncogenic Heterozygous Gain-of-Function Mutations in Human Hematopoietic Stem and Progenitor Cells
    DOI 10.3791/64558-v
    Type Journal Article
    Author Sconocchia T
    Journal Journal of Visualized Experiments
  • 2023
    Title Engineering Oncogenic Heterozygous Gain-of-Function Mutations in Human Hematopoietic Stem and Progenitor Cells.
    DOI 10.3791/64558
    Type Journal Article
    Author Sconocchia T
    Journal Journal of visualized experiments : JoVE
  • 2023
    Title Human gene-engineered calreticulin mutant stem cells recapitulate MPN hallmarks and identify targetable vulnerabilities
    DOI 10.1038/s41375-023-01848-6
    Type Journal Article
    Author Foßelteder J
    Journal Leukemia
    Pages 843-853
    Link Publication
  • 2023
    Title RUNX1 loss renders hematopoietic and leukemic cells dependent on interleukin-3 and sensitive to JAK inhibition
    DOI 10.1172/jci167053
    Type Journal Article
    Author Fan A
    Journal Journal of Clinical Investigation
    Link Publication
  • 2023
    Title BRAFV600E promotes DC3/monocyte differentiation in human gene-engineered HSPCs and causes multisystem histiocytosis
    DOI 10.1038/s41375-023-02019-3
    Type Journal Article
    Author Sconocchia T
    Journal Leukemia
    Pages 2292-2296
    Link Publication
  • 2024
    Title Acute myeloid leukemia in the next-generation sequencing era
    DOI 10.1007/s00508-024-02463-w
    Type Journal Article
    Author Wurm S
    Journal Wiener klinische Wochenschrift
    Pages 1-13
    Link Publication
  • 2023
    Title Functional characterization of CALR mutations in human HSPCs using CRISPR/Cas9 genome engineering.
    Type PhD Thesis
    Author Johannes Foßelteder
  • 2023
    Title Langerhans cell histiocytosis: current advances in molecular pathogenesis
    DOI 10.3389/fimmu.2023.1275085
    Type Journal Article
    Author Sconocchia T
    Journal Frontiers in Immunology
    Pages 1275085
    Link Publication
  • 2021
    Title Micro-RNA-125a mediates the effects of hypomethylating agents in chronic myelomonocytic leukemia
    DOI 10.1186/s13148-020-00979-2
    Type Journal Article
    Author Berg J
    Journal Clinical Epigenetics
    Pages 1
    Link Publication
Methods & Materials
  • 2023
    Title Engineering oncogenic heterozygous gain-of-function mutations using CRISPR/Cas9
    Type Technology assay or reagent
    Public Access
Datasets & models
  • 2023 Link
    Title CALR mutation-induced transcriptional changes in cord blood-derived hematopoietic stem and progenitor cells
    DOI 10.1038/s41375-023-01848-6
    Type Database/Collection of data
    Public Access
    Link Link
  • 2023 Link
    Title BRAFV600E-induced transcriptional changes in cord blood-derived hematopoietic stem and progenitor cells
    DOI 10.1038/s41375-023-02019-3
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 2023
    Title APA announcement
    Type A press release, press conference or response to a media enquiry/interview
Scientific Awards
  • 2024
    Title Speaker at Experimental and Translational Hematology Meeting, Krakow, POL
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title ÖGHO Best Abstract Award
    Type Poster/abstract prize
    Level of Recognition National (any country)
Fundings
  • 2021
    Title Engineered human stem cells for mutation-specific eradication of myelofibrosis
    Type Research grant (including intramural programme)
    Start of Funding 2021
    Funder Medical Research Future Fund
  • 2022
    Title Investigating the effect of JAK2V617F gene dosage on MPN phenotype by forward and reverse CRISPR/Cas9 genome engineering.
    Type Research grant (including intramural programme)
    Start of Funding 2022
    Funder Österreichische Gesellschaft für Hämatologie & Medizinische Onkologie
  • 2021
    Title Identifying the hematopoietic and leukemic stem cell niches
    Type Research grant (including intramural programme)
    Start of Funding 2021
    Funder Austrian Science Fund (FWF)

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