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CATalytic mechanisms and AppLications of OXidoreductases - CATALOX

CATalytic mechanisms and AppLications of OXidoreductases - CATALOX

Robert Kourist (ORCID: 0000-0002-2853-3525)
  • Grant DOI 10.55776/DOC46
  • Funding program doc.funds
  • Status ended
  • Start October 1, 2019
  • End February 29, 2024
  • Funding amount € 1,902,624
  • E-mail

Disciplines

Biology (50%); Chemistry (50%)

Keywords

    Biocatalysis, Enzymes, Reaction Mechanism, Redox Reactions, Protein Engineering

Abstract Final report

Reduction and oxidation (redox) reactions play a pivotal role in nature because of their importance in energy metabolism and the biosynthesis of a plethora of natural products. Similarly, many industrial syntheses leading to a wealth of chemical compounds involve redox reactions. However, many of the currently employed redox reactions require the use of toxic reagents or are economically inefficient. CATALOX will provide an array of cutting edge research projects as well as a solid methodological platform with the aim to set new standards in the understanding and potential utilisation of enzyme catalysed redox reactions. Our faculty combines the highly interdisciplinary research activities of five institutes, i.e. Biochemistry (Macheroux), Biotechnology & Biochemical Engineering (Nidetzky), Molecular Biotechnology (Glieder and Kourist), Process and Particle Engineering (Gruber-Wölfler) and Organic Chemistry (Breinbauer) at the Graz University of Technology and two institutes, i.e. Chemistry (Kroutil) and Molecular Biosciences (Gruber) at the University of Graz and thus represents an internationally recognized consortium in the area of biocatalysis and biotechnology. Furthermore, our aims will be supported by close interactions with the Austrian Centre of Industrial Biotechnology to explore the utility of our scientific discoveries for applications and to link our students with its industrial network of possible future employers and partners. A hallmark of our proposal is the proven close collaboration within our consortium, but equally our engagement with national and international experts to achieve the successful development of fundamental research topics. Our PhD training program will provide an outstanding platform for doctoral students to investigate the catalytic mechanisms and the potential applications of redox enzymes, so-called oxidoreductases, with a focus on challenging reactions. This will ensure that our students have the opportunity to be trained in a variety of competitive and international research environments and thus prepare them for a leading career in research and development. The recruitment and selection process for doctoral students will adhere to international standards to ensure that the best applicants will be admitted to our program. The doctoral students will benefit from a network of mentoring and supervisory instruments throughout their training. Equally important, the students will benefit from a multidisciplinary group of internationally recognized principal investigators and a well-defined set of hypothesis-driven research projects. In this unique and focused research environment, the students will acquire expertise in crucial areas of enzyme catalysis ranging from organic synthesis, mechanistic enzymology, structural biology to process engineering. Thus, our ambitious and competitive program will promote the careers of young scientists, enhance the visibility of biotechnological research in Austria and set the stage for new ground-breaking and innovative basic as well as translational research. 1

The doc.funds initiative CATALOX joint 10 young researchers to investigate the mechanisms and applications of so-called oxidoreductases. These biocatalysts form the largest class of enzymes and play an important role in energy metabolism. The associated doctoral program is part of a collaboration between TU Graz and the University of Graz within the framework program "NaWI Graz". As part of their scientific training, the doctoral students benefited from the international reputation of the participating research group leaders and the focused research projects. The interdisciplinary approach offered the young researchers the opportunity to prepare themselves for attractive career options in research and development. In the dissertation projects, the doctoral students acquired detailed knowledge in key topics of biocatalysis and biotechnology - from organic synthesis, mechanistic enzymology, enzyme engineering, structural biology to process technology. The results of the research range from the isolation of new cold-active oxidoreductases and mechanistic investigations to the establishment of new catalysts for the use of renewable raw materials.

Consortium
  • Anton Glieder, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Bernd Nidetzky, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Heidrun Gruber-Wölfler, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Karl Gruber, Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Margit Winkler, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Peter Macheroux, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Robert Kourist, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Rolf Breinbauer, Technische Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Silvia Glück-Harter, Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
  • Wolfgang Kroutil, Universität Graz
    consortium member (01.10.2019 - 29.02.2024)
Research institution(s)
  • Technische Universität Graz
International project participants
  • Siegfried Waldvogel, Johannes Gutenberg-Universität Mainz - Germany
  • Andrea Mattevi, Università degli studi di Pavia - Italy
  • Paula Tamagnini, Universidade do Porto - Portugal
  • Fahmi Himo, University of Stockholm - Sweden
  • Nicholas J. Turner, University of Manchester - United Kingdom

Research Output

  • 912 Citations
  • 69 Publications
  • 2 Datasets & models
  • 6 Disseminations
  • 2 Scientific Awards
Publications
  • 0
    Title Systematic investigation towards exhaustive post-translational modification of carboxylate reductases
    Type PhD Thesis
    Author Hashem, Chiam
  • 0
    Title Novel biocatalysts for the hydroxylation of heterocyclic compounds
    Type PhD Thesis
    Author Peces Perez, Rosa Maria
  • 0
    Title Oxidation-reduction driven multi-step transformation in sugar metabolism and synthesis: mechanism and application
    Type PhD Thesis
    Author Bitter, Johannes
  • 0
    Title Novel unspecific peroxygenases for hydroxylation of heterocyclic molecules
    Type PhD Thesis
    Author Pichler, Carsten
  • 2020
    Title Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet–Spengler Reactions
    DOI 10.1021/jacs.9b08704
    Type Journal Article
    Author Eger E
    Journal Journal of the American Chemical Society
    Pages 792-800
    Link Publication
  • 2021
    Title Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis
    DOI 10.26434/chemrxiv.13521527
    Type Preprint
    Author Reischauer S
  • 2021
    Title Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis
    DOI 10.26434/chemrxiv.13521527.v1
    Type Preprint
    Author Reischauer S
  • 2021
    Title Characterization and immobilization of Pycnoporus cinnabarinus carboxylic acid reductase, PcCAR2
    DOI 10.1016/j.jbiotec.2021.12.010
    Type Journal Article
    Author Maphatsoe M
    Journal Journal of Biotechnology
    Pages 47-54
    Link Publication
  • 2020
    Title Towards the Quantification of Phosphopantetheinylation - Scouting for Activated Carboxylic Acid Reductase
    Type Other
    Author Hashem C.
    Conference ÖGMBT Life Science
  • 2020
    Title Engineering of NADPH Supply Boosts Photosynthesis-Driven Biotransformations
    DOI 10.1021/acscatal.0c02601
    Type Journal Article
    Author Assil-Companioni L
    Journal ACS Catalysis
    Pages 11864-11877
    Link Publication
  • 2020
    Title Extending the Library of Light-Dependent Protochlorophyllide Oxidoreductases and their Solvent Tolerance, Stability in Light and Cofactor Flexibility
    DOI 10.1002/cctc.202000561
    Type Journal Article
    Author Schmermund L
    Journal ChemCatChem
    Pages 4044-4051
    Link Publication
  • 2020
    Title Secretion of Pseudomonas aeruginosa Lipoxygenase by Pichia pastoris upon Glycerol Feed
    DOI 10.1002/biot.202000089
    Type Journal Article
    Author Hashem C
    Journal Biotechnology Journal
    Link Publication
  • 2020
    Title C?C-Ene-Reductases Reduce the C?N Bond of Oximes
    DOI 10.1021/acscatal.0c03755
    Type Journal Article
    Author Velikogne S
    Journal ACS Catalysis
    Pages 13377-13382
    Link Publication
  • 2020
    Title Pyrazines: Synthesis and Industrial Application of these Valuable Flavor and Fragrance Compounds
    DOI 10.1002/biot.202000064
    Type Journal Article
    Author Mortzfeld F
    Journal Biotechnology Journal
    Link Publication
  • 2019
    Title Goodbye methanol induction: Secretion of Pseudomonas aeruginosa lipoxygenase by Pichia pastoris upon glycerol feed
    Type Other
    Author Hashem C.
    Conference European Summit of Industrial Biotechnology
  • 2019
    Title Valorization of Fatty Acids by Pichia pastoris: A Fresh Approach for Green Leaf Volatile Synthesis
    Type Other
    Author Hashem C.
    Conference International Congress of the Malaysian Society for Microbiology 2019 (ICMSM2019)
  • 2025
    Title Interactive 3D Objects Enhance Scientific Communication of Structural Data
    DOI 10.1002/cbic.202500036
    Type Journal Article
    Author Mokos D
    Journal ChemBioChem
    Link Publication
  • 2024
    Title Old Yellow Enzymes as Oxime Reductases: New Variants by Substrate-Based Enzyme Engineering
    DOI 10.1002/cctc.202400642
    Type Journal Article
    Author Polidori N
    Journal ChemCatChem
    Link Publication
  • 2024
    Title Structural investigation of Trypanosoma cruzi Akt-like kinase as drug target against Chagas disease
    DOI 10.1038/s41598-024-59654-8
    Type Journal Article
    Author Stadler K
    Journal Scientific Reports
    Pages 10039
    Link Publication
  • 2024
    Title Asymmetric Synthesis of Chiral 2-Cyclohexenones with Quaternary Stereocenters via Ene-Reductase Catalyzed Desymmetrization of 2,5-Cyclohexadienones
    DOI 10.1021/acscatal.4c00276
    Type Journal Article
    Author Friess M
    Journal ACS Catalysis
    Pages 7256-7266
    Link Publication
  • 2024
    Title Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer
    DOI 10.1038/s41598-024-69160-6
    Type Journal Article
    Author Kerschbaumer B
    Journal Scientific Reports
    Pages 18093
    Link Publication
  • 2024
    Title Coupling photocatalytic trifluoromethylation with biocatalytic stereoselective ketone reduction in continuous flow
    DOI 10.1007/s11696-024-03649-2
    Type Journal Article
    Author Valotta A
    Journal Chemical Papers
    Pages 7973-7986
    Link Publication
  • 2024
    Title Enzyme Machinery for Bacterial Glucoside Metabolism through a Conserved Non-hydrolytic Pathway
    DOI 10.1002/anie.202410681
    Type Journal Article
    Author Kastner K
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2024
    Title A multistep (semi)-continuous biocatalytic setup for the production of polycaprolactone
    DOI 10.1039/d3re00536d
    Type Journal Article
    Author Valotta A
    Journal Reaction Chemistry & Engineering
    Pages 713-727
    Link Publication
  • 2022
    Title Structure of the Reductase Domain of a Fungal Carboxylic Acid Reductase and Its Substrate Scope in Thioester and Aldehyde Reduction
    DOI 10.1021/acscatal.2c04426
    Type Journal Article
    Author Daniel B
    Journal ACS Catalysis
    Pages 15668-15674
    Link Publication
  • 2024
    Title Multistep (bio)catalytic cascade reactions in continuous flow
    Type PhD Thesis
    Author Valotta, Alessia
  • 2024
    Title Investigation of the Substrate Acceptance of Decarboxylative Enzymes
    Type PhD Thesis
    Author Bauer, Kristin
  • 2024
    Title Biochemical and structural studies on selected flavoenzymes
    Type PhD Thesis
    Author Kerschbaumer, Bianca
  • 2024
    Title Investigation of Non-natural Ene-reductase Catalyzed Reactions
    Type PhD Thesis
    Author Friess, Michael
  • 2024
    Title Cyclic Deracemization of rac-Sulfoxides via Alternating Biocatalytic Reduction and Light-Dependent Oxidation Employing Eosin Y as Photocatalyst
    DOI 10.1002/cctc.202400073
    Type Journal Article
    Author Bierbaumer S
    Journal ChemCatChem
    Link Publication
  • 2024
    Title Loop 6 and the ß-hairpin flap are structural hotspots that determine cofactor specificity in the FMN-dependent family of ene-reductases
    DOI 10.1111/febs.17055
    Type Journal Article
    Author Kerschbaumer B
    Journal The FEBS Journal
    Pages 1560-1574
    Link Publication
  • 2024
    Title Deciphering the Unconventional Reduction of C?N Bonds by Old Yellow Enzymes Using QM/MM
    DOI 10.1021/acscatal.3c04362
    Type Journal Article
    Author Sahrawat A
    Journal ACS Catalysis
    Pages 1257-1266
    Link Publication
  • 2023
    Title A community effort in SARS-CoV-2 drug discovery
    DOI 10.1002/minf.202300262
    Type Journal Article
    Author Schimunek J
    Journal Molecular Informatics
  • 2023
    Title Enzymatic ß-elimination in natural product O- and C-glycoside deglycosylation
    DOI 10.1038/s41467-023-42750-0
    Type Journal Article
    Author Bitter J
    Journal Nature Communications
    Pages 7123
    Link Publication
  • 2021
    Title Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways**
    DOI 10.1002/anie.202100164
    Type Journal Article
    Author Schmermund L
    Journal Angewandte Chemie International Edition
    Pages 6965-6969
    Link Publication
  • 2021
    Title Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways**
    DOI 10.1002/ange.202100164
    Type Journal Article
    Author Schmermund L
    Journal Angewandte Chemie
    Pages 7041-7045
    Link Publication
  • 2021
    Title The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana
    DOI 10.1016/j.phytochem.2021.112822
    Type Journal Article
    Author Eggers R
    Journal Phytochemistry
    Pages 112822
    Link Publication
  • 2021
    Title 3D printed ceramics as solid supports for enzyme immobilization: an automated DoE approach for applications in continuous flow
    DOI 10.1007/s41981-021-00163-4
    Type Journal Article
    Author Valotta A
    Journal Journal of Flow Chemistry
    Pages 675-689
    Link Publication
  • 2021
    Title Characterization and Immobilization of Pycnoporous cinnabarinus Carboxylic Acid Reductase - A Prospective Reusable Biocatalyst
    Type Other
    Author Hashem C.
    Conference Biotrans 2021
  • 2021
    Title Approaching an Efficient System for Green Leaf Volatile Synthesis.
    Type Other
    Author Hashem C.
    Conference Next Generation Biocatalysis - An International Young Investigator Virtual Symposium
  • 2021
    Title Reduction Domain of Carboxylic Acid Reductase - A New Insight into Fungal CARs
    Type Other
    Author Daniel B.
    Conference 23rd DocDays
  • 2023
    Title Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines
    DOI 10.1021/acscatal.2c06137
    Type Journal Article
    Author Breukelaar W
    Journal ACS Catalysis
    Pages 2610-2618
    Link Publication
  • 2023
    Title Enzymatic Conversion of CO2: From Natural to Artificial Utilization
    DOI 10.1021/acs.chemrev.2c00581
    Type Journal Article
    Author Bierbaumer S
    Journal Chemical Reviews
    Pages 5702-5754
    Link Publication
  • 2023
    Title Optimizing variant-specific therapeutic SARS-CoV-2 decoys using deep-learning-guided molecular dynamics simulations
    DOI 10.1038/s41598-023-27636-x
    Type Journal Article
    Author Köchl K
    Journal Scientific Reports
    Pages 774
    Link Publication
  • 2023
    Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis
    Type Other
    Author Pichler C.
    Conference 3rd NextGenBiocat 2023
  • 2023
    Title A Magic Piece of Short Unspecific Peroxygenases? - A Surface Alpha Helix as Key Part for Catalytic Specificity
    Type Other
    Author Holzschuster V.
    Conference Biotrans 2023: 16th International Symposium on Biocatalysis & Biotransformations
  • 2023
    Title Laboratory evolution of a fungal unspecific peroxygenase to elucidate the structural and functional relationship
    Type Other
    Author Holzschuster V.
    Conference Enzyme Engineering XXVII
  • 2023
    Title Laboratory evolution of fungal heme-thiolate enzymes employing Komagataella phaffii as a host system
    Type Other
    Author Holzschuster V.
    Conference 11th Conference on Recombinant Protein Production: RPP 2023
  • 2023
    Title Transformations of Indole Derivatives to Build Multi-Enzymatic Sequences Combined with Classic Organic Synthesis towards Chanoclavine-I
    Type PhD Thesis
    Author Eggbauer, Bettina
  • 2023
    Title Reduction of Oximes by Old-Yellow-Enzymes: Structures of Substrate Complexes and Enzyme Engineering
    Type PhD Thesis
    Author Polidori, Nakia
  • 2023
    Title Simulating Biomolecular Interactions Across Scales - From Electrons to Macromolecules
    Type PhD Thesis
    Author Sahrawat, Amit Singh
  • 2023
    Title Biocatalyitc Reduction of Oximes Using Ene-Reductases: Substrate Scope, Cascades and Mechanism
    Type PhD Thesis
    Author Breukelaar, Willem B.
  • 2023
    Title Synthesis of Enantiopure Sulfoxides by Combination of Photo- and Biocatalysis
    Type PhD Thesis
    Author Bierbaumer, Sarah
  • 2021
    Title The role of biocatalysis in the asymmetric synthesis of alkaloids – an update
    DOI 10.1039/d1ra04181a
    Type Journal Article
    Author Cigan E
    Journal RSC Advances
    Pages 28223-28270
    Link Publication
  • 2021
    Title Serine 477 plays a crucial role in the interaction of the SARS-CoV-2 spike protein with the human receptor ACE2
    DOI 10.1038/s41598-021-83761-5
    Type Journal Article
    Author Singh A
    Journal Scientific Reports
    Pages 4320
    Link Publication
  • 2022
    Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis
    Type Other
    Author Novak K.
    Conference Summer School Biotransformations 2022
  • 2022
    Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis
    Type Other
    Author Pichler C.
    Conference European Summit of Industrial Biotechnology 2022 (ESIB 2022)
  • 2022
    Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis
    Type Other
    Author Pichler C.
    Conference Pichia 2022
  • 2022
    Title Recent changes in the mutational dynamics of the SARS-CoV-2 main protease substantiate the danger of emerging resistance to antiviral drugs
    DOI 10.3389/fmed.2022.1061142
    Type Journal Article
    Author Parigger L
    Journal Frontiers in Medicine
    Pages 1061142
    Link Publication
  • 2022
    Title From linoleic acid to hexanal and hexanol by whole cell catalysis with a lipoxygenase, hydroperoxide lyase and reductase cascade in Komagataella phaffii
    DOI 10.3389/fmolb.2022.965315
    Type Journal Article
    Author Hashem C
    Journal Frontiers in Molecular Biosciences
    Pages 965315
    Link Publication
  • 2022
    Title Flavofun: Exploration of fungal flavoproteomes
    DOI 10.3389/fctls.2022.1021691
    Type Journal Article
    Author Kerschbaumer B
    Journal Frontiers in Catalysis
    Pages 1021691
    Link Publication
  • 2023
    Title A chromosome-level genome assembly for Erianthus fulvus provides insights into its biofuel potential and facilitates breeding for improvement of sugarcane
    DOI 10.1016/j.xplc.2023.100562
    Type Journal Article
    Author Kui L
    Journal Plant Communications
    Pages 100562
    Link Publication
  • 2022
    Title Optimizing variant-specific therapeutic SARS-CoV-2 decoys using deep-learning-guided molecular dynamic simulations.
    DOI 10.21203/rs.3.rs-1971184/v1
    Type Preprint
    Author Koechl K
    Link Publication
  • 2022
    Title Structural bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild type reference
    DOI 10.1038/s41598-022-18507-y
    Type Journal Article
    Author Durmaz V
    Journal Scientific Reports
    Pages 14534
    Link Publication
  • 2022
    Title Photobiocatalysis in Continuous Flow
    DOI 10.3389/fctls.2021.816538
    Type Journal Article
    Author Chanquia S
    Journal Frontiers in Catalysis
    Pages 816538
    Link Publication
  • 2022
    Title Synthesis of Enantiopure Sulfoxides by Concurrent Photocatalytic Oxidation and Biocatalytic Reduction
    DOI 10.1002/anie.202117103
    Type Journal Article
    Author Bierbaumer S
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2022
    Title Regioselective Biocatalytic C4-Prenylation of Unprotected Tryptophan Derivatives
    DOI 10.1002/cbic.202200311
    Type Journal Article
    Author Eggbauer B
    Journal ChemBioChem
    Link Publication
  • 2022
    Title Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion
    DOI 10.1002/ange.202207971
    Type Journal Article
    Author Jurkaš V
    Journal Angewandte Chemie
    Link Publication
  • 2022
    Title Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion
    DOI 10.1002/anie.202207971
    Type Journal Article
    Author Jurkaš V
    Journal Angewandte Chemie International Edition
    Link Publication
Datasets & models
  • 2024 Link
    Title CCDC 2324914: Experimental Crystal Structure Determination
    DOI 10.5517/ccdc.csd.cc2j1873
    Type Database/Collection of data
    Public Access
    Link Link
  • 2024 Link
    Title CCDC 2324913: Experimental Crystal Structure Determination
    DOI 10.5517/ccdc.csd.cc2j1862
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 0 Link
    Title Photosynthesis-driven biocatalytic redox reactions
    Type A talk or presentation
    Link Link
  • 0
    Title Educational video "Cupriavidus example"
    Type A talk or presentation
  • 0 Link
    Title Announcement of scientific results on TU Graz website
    Type A press release, press conference or response to a media enquiry/interview
    Link Link
  • 0 Link
    Title NADPH-availability is a limiting factor for photobiocatalytic biotransformations
    Type A talk or presentation
    Link Link
  • 0 Link
    Title Article in national news on cyanobacteria as environmentally-friendly catalysts
    Type A magazine, newsletter or online publication
    Link Link
  • 0 Link
    Title Engineering of NADPH Supply Boosts Photosynthesis-Driven Biotransformations
    Type Engagement focused website, blog or social media channel
    Link Link
Scientific Awards
  • 2022
    Title NextGenBiocat 2022/Delft
    Type Poster/abstract prize
    Level of Recognition Continental/International
  • 2021
    Title Vincent Massey Award
    Type Research prize
    Level of Recognition Continental/International

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