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Stem cell regulation in a marine annelid

Stem cell regulation in a marine annelid

Florian Raible (ORCID: 0000-0002-4515-6485)
  • Grant DOI 10.55776/I2972
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start November 1, 2016
  • End October 31, 2020
  • Funding amount € 334,124

Bilaterale Ausschreibung: Frankreich

Disciplines

Biology (100%)

Keywords

    Transgenesis, Stem Cells, Lineage Tracing, Marine Biology, Regeneration

Abstract Final report

Whereas regeneration in mammals is restricted to few tissues, many invertebrates possess remarkable regeneration capacity that even includes the central nervous system. This capacity has been linked to the presence of specific cells that are characterized by a molecular fingerprint related to germ line cells. It has been speculated that this molecular fingerprint endows cells with stem cell abilities. But research into these cells has so far been limited to very few model species. The marine bristleworm Platynereis is a highly attractive organism for regeneration and stem cell research. Not only does this animal regenerate its trunk (including a functional central nervous system) after amputation. But in addition, the regeneration capacity of this worm is under tight control by a brain hormone activity that has long remained enigmatic. One intriguing possibility therefore is that the bristleworm possesses stem cells that are under hormonal control. Studies by one of the participating research groups have indeed identified cells in the regenerating tissue that are designated by the molecular fingerprint that makes them strong candidates for multipotent stem cells. Moreover, the second participating research group has recently identified the first bioactive component of the long-sought brain hormone activity. These complementary studies by both research teams will now allow them to engage in a highly synergistic project and answer two fundamental questions that are of key relevance for understanding the bristleworms fantastic regenerative system: a) Are the identified special cells indeed stem cells, i.e. are they able to self-renew and directly contribute to the regrowing tissue? b) Does the brain as well as the identified brain hormone component influence these cells, either on the molecular level, or in their ability to perform their functions? The answers to these questions will enable the team to gain critical insight into the mechanisms of stem cells and their hormonal control, and thereby break new scientific grounds in stem cell research.

The international research project "Stem cell regulation in a marine annelid" has yielded novel insight into the ways how brain-derived hormones can influence the regrowth of body parts. Stem cells play major roles in development and disease. Apart from their role in regular developmental growth, stem cells also allow certain animals to regenerate lost tissue. Regenerative capacities, however, differ greatly between species, raising questions as to what defines such capacities. Research into the regulation of stem cells in the context of regenerative growth therefore holds potential to unravel existing underlying regulatory processes. The international research project has investigated a potential role of hormones in regulating stem cells in regenerative growth. It has taken advantage of a marine annelid worm whose regeneration capacity dramatically changes under the influence of brain-derived hormones. The experimental research performed in the context of the project were aimed at characterizing the molecular makeup of the stem cell system involved in regenerative growth, to visualize such cells in the animal, and to assess if or not there were changes in the cellular signatures when the animals were deprived of hormones. In a collaborative effort, the involved teams approached these questions from different directions: by analyzing cellular proliferation and the expression of established marker genes under different hormonal situations, by establishing a method for dissociating regenerating tissue and characterizing the molecular "signatures" of thousands of individual cells ("single-cell sequencing"), and by introducing stable fluorescent biomarkers into animals prior to regeneration, in order to map the tissue source of the regenerating cells. The project has contributed to a series of scientific publications. The work of the Austrian team has also allowed the development of a new technique (DEEP-Clear) for visualizing cells, cellular markers or entire nervous systems in the context of whole organisms that was found to be broadly applicable to other species, ranging from squids to salamanders. Altogether, the project has yielded both scientific insight and technological advance that will be relevant for future analyses of animal stem cell systems and their regulation.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Guillaume Balavoine, Université Paris Diderot - Paris 7 - France
  • Michel Vervoort, Université Paris Diderot - Paris 7 - France
  • Pavel Tomancak, Max-Planck-Institut für - Germany

Research Output

  • 413 Citations
  • 30 Publications
  • 2 Methods & Materials
Publications
  • 2023
    Title A Fast And Versatile Method for Simultaneous HCR, Immunohistochemistry And Edu Labeling (SHInE)
    DOI 10.1093/icb/icad007
    Type Journal Article
    Author Coric A
    Journal Integrative And Comparative Biology
    Pages 372-381
    Link Publication
  • 2024
    Title Molecular profiles, sources and lineage restrictions of stem cells in an annelid regeneration model
    DOI 10.1101/2024.07.09.602635
    Type Preprint
    Author Stockinger A
    Pages 2024.07.09.602635
    Link Publication
  • 2024
    Title Molecular profiles, sources and lineage restrictions of stem cells in an annelid regeneration model
    DOI 10.1038/s41467-024-54041-3
    Type Journal Article
    Author Stockinger A
    Journal Nature Communications
    Pages 9882
    Link Publication
  • 2024
    Title Dynamic microvilli sculpt bristles at nanometric scale
    DOI 10.1038/s41467-024-48044-3
    Type Journal Article
    Author Ikeda K
    Journal Nature Communications
    Pages 3733
    Link Publication
  • 2024
    Title Molecular circadian rhythms are robust in marine annelids lacking rhythmic behavior
    DOI 10.1371/journal.pbio.3002572
    Type Journal Article
    Author Häfker N
    Journal PLOS Biology
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system
    DOI 10.1186/s13227-021-00180-3
    Type Journal Article
    Author Özpolat B
    Journal EvoDevo
    Pages 10
    Link Publication
  • 2021
    Title Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution
    DOI 10.7554/elife.66144
    Type Journal Article
    Author Revilla-I-Domingo R
    Journal eLife
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system
    DOI 10.5281/zenodo.4907399
    Type Other
    Author Ozpolat B
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system
    DOI 10.5281/zenodo.4907400
    Type Other
    Author Ozpolat B
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system
    DOI 10.17863/cam.76093
    Type Other
    Author Randel N
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system.
    DOI 10.17863/cam.77524
    Type Other
    Author Randel N
    Link Publication
  • 2021
    Title The Nereid on the rise: Platynereis as a model system.
    DOI 10.17863/cam.78076
    Type Journal Article
    Author Randel N
    Link Publication
  • 2021
    Title Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution
    DOI 10.1101/2021.01.10.426124
    Type Preprint
    Author Revilla-I-Domingo R
    Pages 2021.01.10.426124
    Link Publication
  • 2022
    Title Melanopsin elevates locomotor activity during the wake state of the diurnal zebrafish
    DOI 10.15252/embr.202051528
    Type Journal Article
    Author Dekens M
    Journal The EMBO Reports
    Link Publication
  • 2022
    Title A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment
    DOI 10.1038/s41467-022-32562-z
    Type Journal Article
    Author Poehn B
    Journal Nature Communications
    Pages 5220
    Link Publication
  • 2022
    Title Behavioral rhythms are bad predictors of general organismal rhythmicity
    DOI 10.1101/2022.07.16.500291
    Type Preprint
    Author Häfker N
    Pages 2022.07.16.500291
    Link Publication
  • 2022
    Title A fast and versatile method for simultaneous HCR, immunohistochemistry and EdU labeling (SHInE)
    DOI 10.1101/2022.10.13.512152
    Type Preprint
    Author Coric A
    Pages 2022.10.13.512152
    Link Publication
  • 2022
    Title The cation exchanger Letm1, circadian rhythms, and NAD(H) levels interconnect in diurnal zebrafish
    DOI 10.26508/lsa.202101194
    Type Journal Article
    Author Dao P
    Journal Life Science Alliance
    Link Publication
  • 2017
    Title Instrument design and protocol for the study of light controlled processes in aquatic organisms, and its application to examine the effect of infrared light on zebrafish
    DOI 10.1371/journal.pone.0172038
    Type Journal Article
    Author Dekens M
    Journal PLOS ONE
    Link Publication
  • 2018
    Title Establishment of Transgenesis in the Demosponge Suberites domuncula
    DOI 10.1534/genetics.118.301121
    Type Journal Article
    Author Revilla-I-Domingo R
    Journal Genetics
    Pages 435-443
    Link Publication
  • 2020
    Title The cytokine MIF controls daily rhythms of symbiont nutrition in an animal–bacterial association
    DOI 10.1073/pnas.2016864117
    Type Journal Article
    Author Koch E
    Journal Proceedings of the National Academy of Sciences
    Pages 27578-27586
    Link Publication
  • 2020
    Title A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity
    DOI 10.1126/sciadv.aba0365
    Type Journal Article
    Author Pende M
    Journal Science Advances
    Link Publication
  • 2017
    Title Instrument design and protocol for the study of light controlled processes in aquatic organisms, and its application to examine the effect of infrared light on zebrafish
    DOI 10.5445/ir/1000067302
    Type Other
    Author Dekens M
    Link Publication
  • 2019
    Title Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
    DOI 10.7554/elife.41556
    Type Journal Article
    Author Schenk S
    Journal eLife
    Link Publication
  • 2019
    Title Differential impacts of the head on Platynereis dumerilii peripheral circadian rhythms
    DOI 10.1101/593772
    Type Preprint
    Author Arboleda E
    Pages 593772
    Link Publication
  • 2019
    Title A scalable culturing system for the marine annelid Platynereis dumerilii
    DOI 10.1101/714238
    Type Preprint
    Author Kuehn E
    Pages 714238
    Link Publication
  • 2019
    Title Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in Platynereis
    DOI 10.1073/pnas.1910262116
    Type Journal Article
    Author Andreatta G
    Journal Proceedings of the National Academy of Sciences
    Pages 1097-1106
    Link Publication
  • 2019
    Title Evolutionarily conserved peptides coordinate lunar phase and metabolism
    DOI 10.1073/pnas.1920432117
    Type Journal Article
    Author Whitlock K
    Journal Proceedings of the National Academy of Sciences
    Pages 805-807
    Link Publication
  • 2019
    Title A scalable culturing system for the marine annelid Platynereis dumerilii
    DOI 10.1371/journal.pone.0226156
    Type Journal Article
    Author Kuehn E
    Journal PLOS ONE
    Link Publication
  • 2019
    Title Differential Impacts of the Head on Platynereis dumerilii Peripheral Circadian Rhythms
    DOI 10.3389/fphys.2019.00900
    Type Journal Article
    Author Arboleda E
    Journal Frontiers in Physiology
    Pages 900
    Link Publication
Methods & Materials
  • 2024
    Title Time-resolved single-cell RNA sequencing
    Type Technology assay or reagent
    Public Access
  • 2020
    Title DEEP-Clear
    Type Technology assay or reagent
    Public Access

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