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The evolution of biomineral prenucleation species: Real-time

Dennis Kurzbach (ORCID: 0000-0001-6455-2136)
  • Grant DOI 10.55776/I5771
  • Funding program Principal Investigator Projects International
  • Status ongoing
  • Start September 1, 2022
  • End August 31, 2026
  • Funding amount € 344,568
  • Project website

France

Disciplines

Chemistry (90%); Geosciences (10%)

Keywords

  • Mineralization,
  • Prenucleation Species,
  • Dissolution DNP,
  • NMR
Abstract

The classic and long-standing nucleation-and-growth theory (CNT) that describes the formation of crystals from liquid solutions was recently challenged by the observation of stable and soluble pre- nucleation species (PNS) prior to the formation of many solid materials. This suggests non-classical crystallization pathways (NCP) as a key route towards various biological and chemical architectures. However, the quasi-absence of structural and dynamical data related to PNS obscures the rationalization of NCP despite its importance in so-called biomineralization processes. Biomineralization denotes the ability of living organisms to produce solid materials. For such process, for example in bone formation events, precursors of crystallization nuclei emerge within milliseconds when calcium and phosphate ions meet in solution. These species, which appear at the beginning of the crystallization process, are to be characterized analytically in the project and observed with high- resolution methods in order to comprehensively describe biominerals and their underlying chemical processes with new insights and technologies. Biomineralization processes are ideal candidates to tackle this shortcoming as biominerals (in particular calcium phosphate) form via PNS intermediates. However, methods providing the time resolution required for the study of such out-of-equilibrium chemical processes are lacking. This project aims to develop original real-time NMR methods to describe transient species in the frame of NCP, including PNS, at the atomistic level during biomineral crystallization. This will be realized through an innovative combination of hyperpolarized liquid and solid-state nuclear magnetic resonance (NMR) approaches, complemented with cutting-edge computational techniques. PNS are solute species described as highly dynamic nanometric ionic entities that spontaneously form in solution preceding the nucleation of solid phases. Throughout precipitation, they are rate-limiting entities constituted of loosely coordinated ions in dynamic equilibrium with the corresponding free solvated species. Recently, PNS have been categorized into two types3 , denoted here as (i) type 1 PNS, which are stable or metastable in solution and only participate in precipitation upon receiving further stimuli, and (ii) type 2 PNS, which appear transiently during the onset of the phase separation event and which are notoriously challenging to detect and characterize due to their limited lifetimes. Due to the aging of the population and the increase in bone pathologies, understanding bone and calcium phosphate biomineralization is becoming a major challenge. The RealTimeNMR project will provide fundamental knowledge on the early stages of biomineral nucleation to understand their formation mechanisms better and rethink the synthesis strategy of biomimetic biomaterials. The project aims to push the knowledge limits of chemistry of life, where biomineralization is a central process.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Christel Gervais, Sorbonne Université - France
  • Thierry Azais, Sorbonne Université - France, project partner

Research Output

  • 56 Citations
  • 9 Publications
  • 1 Policies
  • 1 Methods & Materials
  • 3 Datasets & models
  • 1 Disseminations
Publications
  • 2024
    Title Short-lived calcium carbonate precursors observed in situ via Bullet-dynamic nuclear polarization
    DOI 10.1038/s42004-024-01300-5
    Type Journal Article
    Author Turhan E
    Journal Communications Chemistry
    Pages 210
    Link Publication
  • 2024
    Title Branched Polymeric Prenucleation Assemblies Initiate Calcium Phosphate Precipitation
    DOI 10.1021/jacs.4c07325
    Type Journal Article
    Author Turhan E
    Journal Journal of the American Chemical Society
    Pages 25614-25624
    Link Publication
  • 2024
    Title Hyperpolarized nuclear Overhauser enhancement of alanine methyl groups by doubly relayed proton exchange
    DOI 10.1016/j.jmr.2024.107727
    Type Journal Article
    Author Zachrdla M
    Journal Journal of Magnetic Resonance
    Pages 107727
    Link Publication
  • 2024
    Title An Atomistic View on the Mechanism of Diatom Peptide-Guided Biomimetic Silica Formation
    DOI 10.1002/advs.202401239
    Type Journal Article
    Author Kozak F
    Journal Advanced Science
    Pages 2401239
    Link Publication
  • 2025
    Title R5 Peptides Constitute Condensed Phases with Liquid-Like Properties in Biomimetic Silica Capsules
    DOI 10.1021/acs.jpclett.5c00144
    Type Journal Article
    Author Brandis D
    Journal The Journal of Physical Chemistry Letters
    Pages 4326-4335
    Link Publication
  • 2025
    Title Biomimetic, Peptide-guided Silica Formation by Real-time NMR of Elastin-like and R5 Fusion Peptides – Bimodal Peptide Aggregation Drives Dual-pathway Silicification Mechanisms
    DOI 10.1016/j.jmb.2025.169303
    Type Journal Article
    Author Brandis D
    Journal Journal of Molecular Biology
    Pages 169303
    Link Publication
  • 2023
    Title Biphasic NMR of Hyperpolarized Suspensions?Real-Time Monitoring of Solute-to-Solid Conversion to Watch Materials Grow
    DOI 10.1021/acs.jpcc.3c04198
    Type Journal Article
    Author Turhan E
    Journal The Journal of Physical Chemistry C
    Pages 19591-19598
    Link Publication
  • 2025
    Title Calcium Competitive Inhibition of Langerin by Thiazolopyrimidinones
    DOI 10.1021/acs.jmedchem.5c01756
    Type Journal Article
    Author Ning Y
    Journal Journal of Medicinal Chemistry
    Pages 24924-24934
    Link Publication
  • 2025
    Title Residue-Resolved Liquid-State Hyperpolarized NMR of Peptide Condensate Surfaces
    DOI 10.1021/jacs.5c15053
    Type Journal Article
    Author Brandis D
    Journal Journal of the American Chemical Society
    Pages 36920-36927
    Link Publication
Policies
  • 2023
    Title Training of Researchers
    Type Influenced training of practitioners or researchers
Methods & Materials
  • 2023
    Title Hyperpolraized NMR
    Type Technology assay or reagent
    Public Access
Datasets & models
  • 2023 Link
    Title Data Set for Turhan et al - Biphasic NMR of hyperpolarized suspensions
    DOI 10.5281/zenodo.8325082
    Type Database/Collection of data
    Public Access
    Link Link
  • 2024 Link
    Title Data Set for Branched Polymeric Prenucleation Assemblies Initiate Calcium Phosphate Precipitation
    Type Database/Collection of data
    Public Access
    Link Link
  • 2024 Link
    Title Data Set for Bullet-DNP enables in-situ observation of multiple short-lived calcium carbonate precursors
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 2022
    Title Lange Nacht der Wissenschaft
    Type A talk or presentation

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