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Fast acquisition and metabolic modelling for deuterium MRI

Fast acquisition and metabolic modelling for deuterium MRI

Bernhard Strasser (ORCID: 0000-0001-9542-3855)
  • Grant DOI 10.55776/I6037
  • Funding program Principal Investigator Projects International
  • Status ongoing
  • Start October 1, 2022
  • End September 30, 2027
  • Funding amount € 586,585
  • Project website

Weave: Österreich - Belgien - Deutschland - Luxemburg - Polen - Schweiz - Slowenien - Tschechien

Disciplines

Clinical Medicine (100%)

Keywords

    Proton Magnetic Resonance Spectroscopic Imaging, Metabolic Modelling, Ultra-High Field Mrsi (7T And 14.1T), Deuterium Magnetic Resonance Spectroscopic Imaging, Carbon 13 Mrs, Accelerated Mrsi Encoding

Abstract

The human brain is the organ with the highest energy consumption relative to its weight. This energy is mostly consumed in the form of glucose, which can be metabolised through oxidative, or non- oxidative pathways. In the oxidative pathway glutamate plays a crucial role, while in the latter lactate is of importance. In several diseases such as in brain tumours or epilepsy this energy metabolism is altered, for example in the form of an altered balance between the oxidative and non-oxidative pathway. Therefore, studying the brain energy metabolism can provide valuable insight to understand and detect diseases. Magnetic Resonance Spectroscopic Imaging (MRSI) is a method to investigate the concentrations of specific metabolites using an MR scanner. A special form of MRSI is deuterium-MRSI, where only signal from the hydrogen isotope deuterium can be detected. Before consuming deuterated glucose which has some of its hydrogen atoms replaced by deuterium, no glutamate and lactate signals are detected with deuterium-MRSI, since natural glutamate and lactate have almost no deuterium. After consuming deuterated glucose, it is metabolised into glutamate and lactate, and thus signals show up during the experiment. This allows to quantify the metabolic rates of the oxidative and non-oxidative pathways. Unfortunately, the deuterium-MRSI methodology is not yet fully established, and lacks many developments that have been achieved in MRI or conventional MRSI. Therefore, the goal of this project is to improve the methods of deuterium-MRSI at a human as well as an animal MRI scanner. This includes developing a model for quantifying the oxidative and non-oxidative metabolic rates of glucose, as well as improvements in the acquisition and reconstruction. The goal is to make the acquisition faster and to reduce noise from the data. This can be achieved by measuring the data in concentric rings instead of individual points in the measurement space, and by applying a certain model assuming low-rankedness of the data to distinguish between signal and noise. Further, these developed methods should then be applied as a proof of principle to epilepsy patients and rat models of epilepsy. This will allow us to investigate the benefits of the developed methodology in a real application, and may help to better understand epilepsy. The results will be compared to the standard method for assessing the energy metabolism in epilepsy, FDG-PET.

Research institution(s)
  • Medizinische Universität Wien - 100%
Project participants
  • Ekaterina Pataraia, Medizinische Universität Wien , national collaboration partner
  • Gilbert Hangel, Medizinische Universität Wien , national collaboration partner
  • Karl Rössler, Medizinische Universität Wien , national collaboration partner
  • Siegfried Trattnig, Medizinische Universität Wien , national collaboration partner
  • Thomas Scherer, Medizinische Universität Wien , national collaboration partner
  • Wolfgang Bogner, Medizinische Universität Wien , national collaboration partner
International project participants
  • Bernard Lanz, École polytechnique fédérale de Lausanne - Switzerland
  • Cristina Cudalbu, École polytechnique fédérale de Lausanne - Switzerland, international project partner

Research Output

  • 91 Citations
  • 15 Publications
Publications
  • 2025
    Title Exploring in vivo human brain metabolism at 10.5 T: Initial insights from MR spectroscopic imaging
    DOI 10.1016/j.neuroimage.2025.121015
    Type Journal Article
    Author Hingerl L
    Journal NeuroImage
    Pages 121015
    Link Publication
  • 2025
    Title Deep-ER: Deep Learning ECCENTRIC Reconstruction for fast high-resolution neurometabolic imaging
    DOI 10.1016/j.neuroimage.2025.121045
    Type Journal Article
    Author Weiser P
    Journal NeuroImage
    Pages 121045
    Link Publication
  • 2025
    Title Topographical mapping of metabolic abnormalities in multiple sclerosis using rapid echo-less 3D-MR spectroscopic imaging at 7T
    DOI 10.1016/j.neuroimage.2025.121043
    Type Journal Article
    Author Niess E
    Journal NeuroImage
    Pages 121043
    Link Publication
  • 2025
    Title Comparison of Low-Rank Denoising Methods for Dynamic Deuterium MRSI at 7 T
    DOI 10.1002/nbm.70125
    Type Journal Article
    Author Duguid A
    Journal NMR in Biomedicine
    Link Publication
  • 2025
    Title Myo-Inositol Deficiency, Structural Brain Changes, and Cerebral Perfusion Alterations in Classic Galactosemia: Preliminary Insights From a Multiparametric MRI Study
    DOI 10.1002/jimd.70097
    Type Journal Article
    Author Niess E
    Journal Journal of Inherited Metabolic Disease
    Link Publication
  • 2025
    Title Feasibility of High-Resolution Deuterium Metabolic Imaging of the Human Kidney Using Concentric Ring Trajectory Sampling at 7T
    DOI 10.1002/nbm.70139
    Type Journal Article
    Author Niess F
    Journal NMR in Biomedicine
    Link Publication
  • 2025
    Title Balanced steady state free precession enables high-resolution dynamic 3D Deuterium Metabolic Imaging of the human brain at 7T
    DOI 10.1101/2025.02.06.25321580
    Type Preprint
    Author Frese S
    Pages 2025.02.06.25321580
    Link Publication
  • 2024
    Title Whole-brain deuterium metabolic imaging via concentric ring trajectory readout enables assessment of regional variations in neuronal glucose metabolism
    DOI 10.1002/hbm.26686
    Type Journal Article
    Author Niess F
    Journal Human Brain Mapping
    Link Publication
  • 2024
    Title Proton-free induction decay MRSI at 7 T in the human brain using an egg-shaped modified rosette K-space trajectory
    DOI 10.1002/mrm.30368
    Type Journal Article
    Author Blömer S
    Journal Magnetic Resonance in Medicine
    Pages 1443-1457
    Link Publication
  • 2023
    Title 1H magnetic resonance spectroscopic imaging of deuterated glucose and of neurotransmitter metabolism at 7 T in the human brain
    DOI 10.1038/s41551-023-01035-z
    Type Journal Article
    Author Bednarik P
    Journal Nature Biomedical Engineering
    Pages 1001-1013
    Link Publication
  • 2023
    Title Reproducibility of 3D MRSI for imaging human brain glucose metabolism using direct (2H) and indirect (1H) detection of deuterium labeled compounds at 7T and clinical 3T
    DOI 10.1101/2023.04.17.23288672
    Type Preprint
    Author Niess F
    Pages 2023.04.17.23288672
    Link Publication
  • 2023
    Title Reproducibility of 3D MRSI for imaging human brain glucose metabolism using direct (2H) and indirect (1H) detection of deuterium labeled compounds at 7T and clinical 3T
    DOI 10.1016/j.neuroimage.2023.120250
    Type Journal Article
    Author Niess F
    Journal NeuroImage
    Pages 120250
    Link Publication
  • 2024
    Title WALINET: A water and lipid identification convolutional neural network for nuisance signal removal in 1H$$ {}^1\mathrm{H} $$ MR spectroscopic imaging
    DOI 10.1002/mrm.30402
    Type Journal Article
    Author Weiser P
    Journal Magnetic Resonance in Medicine
    Pages 1430-1442
    Link Publication
  • 2024
    Title Concentric Ring Trajectory Sampling With k-Space Reordering Enables Assessment of Tissue-Specific T1 and T2 Relaxation for 2H-Labeled Substrates in the Human Brain at 7 T
    DOI 10.1002/nbm.5311
    Type Journal Article
    Author Bader V
    Journal NMR in Biomedicine
    Link Publication
  • 2023
    Title Noninvasive 3-Dimensional 1 H-Magnetic Resonance Spectroscopic Imaging of Human Brain Glucose and Neurotransmitter Metabolism Using Deuterium Labeling at 3T : Feasibility and Interscanner Reproducibility.
    DOI 10.1097/rli.0000000000000953
    Type Journal Article
    Author Hingerl L
    Journal Investigative radiology
    Pages 431-437

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