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Characterization of the scramblase mechanism of rhodopsin

Characterization of the scramblase mechanism of rhodopsin

Birgit Ploier-Brandauer (ORCID: )
  • Grant DOI 10.55776/J3686
  • Funding program Erwin Schrödinger
  • Status ended
  • Start November 24, 2014
  • End May 23, 2017
  • Funding amount € 150,040

Disciplines

Biology (80%); Medical-Theoretical Sciences, Pharmacy (20%)

Keywords

    Flip-flop, Rhodopsin, Flippase, Membranes, Lipids, Scramblase

Abstract Final report

Project Short Description Rhodopsin is the visual pigment in photoreceptor cells of the retina and is responsible for the first events in the perception of light. It consists of the apo-protein opsin, a multi-spanning membrane protein, and retinal, a reversibly bound cofactor. Very recently, rhodopsin was demonstrated to be an ATP-independent phospholipid flippase capable of moving phospholipids rapidly across a membrane bilayer. This discovery provided the molecular basis for observations of bidirectional, ATP-independent phospholipid flip-flop in photoreceptor disc membranes and assigned a novel activity to rhodopsin in addition to its well-known function in phototransduction. Lipid trafficking in the retina is crucial for vision. Retinoids must move rapidly between photoreceptor cells and retinal epithelial cells to regenerate rhodopsin after photoactivation. Defects in lipid trafficking result in retinopathies; for example, Stargardts macular dystrophy is caused by the inability to translocate a retinoid-phospholipid adduct across photoreceptor discs. Bidirectional flip-flop, now known to be catalyzed by rhodopsin, resolves the problem of expansion of one phospholipid monolayer at the expense of the other caused by the unidirectional movement of lipids by the two ATP-dependent flippases ABCA4 (Quazi et al., 2012; Weng et al., 1999) and Atp8a2 (Coleman et al., 2009). Although rhodopsin is an extensively-studied protein, hardly anything is known about its structural or dynamic features how it might flip lipids. The proposal presented here is focused on the identification of structural and dynamic features of rhodopsins transmembrane domains that are necessary for its flippase activity. We hypothesize that lipid flipping is made possible by structural elements within rhodopsins transmembrane helical bundle and by dynamic movements of the transmembrane helices. To test this hypothesis we will investigate the effect of replacing specific residues within rhodopsins transmembrane helical bundle, particularly those that face membrane lipids to identify key residues needed for flipping. The mutagenized rhodopsins will be expressed in cultured cells and characterized after affinity purification. Flippase activity will be tested by a well-established fluorescent approach using proteoliposomes with 7-nitrobenz-2-oxa-1,3-diazol (NBD)-labeled lipids whose transbilayer orientation will be probed with the membrane impermeant reductant dithionite. In addition, the fluorescent-based data will be complemented by the establishment of a new flippase assay using natural phospholipids.

Retintis pigmentosa (RP) is an inherited eye disease that leads to peripheral vision loss and night blindness due to progressive degeneration of the rod photoreceptor cells in the retina. More than 1.5 million individuals worldwide suffer from RP. The most common cause of RP are mutations in rhodopsin, a light sensing receptor as well as a critical structural component of photoreceptor cells. We were broadly interested in the mechanistic basis of photoreceptor loss that underlies retinal degeneration in enigmatic cases of RP. Most RP mutations affect rhodopsins stability, activity, or localization. Intriguingly, some RP mutants appear normal by these criteria yet cause disease. We studied and analyzed three such enigmatic mutants - F45L, V209M, F220C. Our data led to the conclusion that unlike wild-type rhodopsin that self- associates to form dimers and higher order oligomers, F45L, V209M and F220C fail to dimerize when reconstituted into lipid vesicles. This result suggests a novel basis for disease. We hypothesize that the dimerization deficiency of these mutants prevents normal photoreceptor function due to a collapse of the highly organized photoreceptor architecture, eventually leading to loss of photoreceptor cells, retinal degeneration and RP pathology.

Research institution(s)
  • Weill Medical College of Cornell University - 100%

Research Output

  • 112 Citations
  • 3 Publications
Publications
  • 2016
    Title Dimerization deficiency of enigmatic retinitis pigmentosa-linked rhodopsin mutants
    DOI 10.1038/ncomms12832
    Type Journal Article
    Author Ploier B
    Journal Nature Communications
    Pages 12832
    Link Publication
  • 2016
    Title A Fluorescence-based Assay of Phospholipid Scramblase Activity.
    DOI 10.3791/54635
    Type Journal Article
    Author Ploier B
    Journal Journal of visualized experiments : JoVE
    Link Publication
  • 2017
    Title flippant–An R package for the automated analysis of fluorescence-based scramblase assays
    DOI 10.1186/s12859-017-1542-y
    Type Journal Article
    Author Cotton R
    Journal BMC Bioinformatics
    Pages 146
    Link Publication

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