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Prokaryotic activity in darc ocean mixing zones

Prokaryotic activity in darc ocean mixing zones

Thomas Reinthaler (ORCID: 0000-0003-3881-3122)
  • Grant DOI 10.55776/P23221
  • Funding program Principal Investigator Projects
  • Status ended
  • Start May 1, 2011
  • End April 30, 2016
  • Funding amount € 282,518

Disciplines

Biology (100%)

Keywords

    Bacteria, Ecotone, Archaea, Metabolic activity, Dark ocean, Omics

Abstract Final report

Frontal systems in the surface layer of the ocean are well known for their elevated biological activity. Such boundary systems, however, are not only detectable as vertical boundary layers in the surface ocean, but may also exist in the deeper layers of the ocean as mixing zones of water masses. These deep ocean fronts or ecotones might be particularly important at ocean ridges, canyons and fracture zones. Based on preliminary measurements, we hypothesize that mixing of deep-water masses create `hot-spots` in prokaryotic diversity and activity with a significant influence on the overall biogeochemical cycles of the dark ocean, similarly to the well studied ecotones. Prokaryotic activity in the mixing zone and the parent water masses of the Charlie-Gibbs Fracture Zone in the North Atlantic will be assessed by determining heterotrophic biomass production, ectoenzyme activity and respiration as well as gene expression. Collectively, these data should allow for an in-depth view on the heterogeneity of prokaryotic organic matter cycling in the deep ocean by shedding light on the microbial ecology of deep-water boundary layers. As these mixing zones of major water masses are abundant, they might significantly stimulate overall matter cycling in the dark ocean.

The dark oceans water column (depth deeper than 200 m) is not homogeneous but composed of several waterbodies that lay on top of each other. These waterbodies, also called water masses, are formed in the surface of particular regions of the ocean and initially have very distinct features with a typical salinity, temperature, gas concentration and nutrients. Due to turbulences in the dark ocean by waves and other physical mechanisms, these water masses are able to mix with each other and thus the environmental conditions for the dark ocean microbes might drastically change. Likewise, the surface ocean has been divided into different oceanic provinces that share a set of similar physical and biological features. The idea of such a classification is to aid sampling in the vast space of the ocean, because it could make it possible to sample at few distinct places in the oceans and allow the extrapolation of the results from these stations to a larger area. While this approach seems to work for phytoplankton it is not clear as of yet whether such a classification into provinces is also relevant for bacteria and archaea, that make up the majority of microbes in the dark ocean. Based on model experiments we hypothesized that mixing of water masses leads to measurable variability in the activity of bacteria and archaea in the dark ocean by either enhancing or retarding the biomass productivity of the cells. For the North Atlantic we found that water mass mixing has a large influence on the distribution of nutrients and other organic matter but a relatively weak influence on the extent of the microbial activity. We also highlight water masses as strong predictors of the microbial community composition, i.e. each water mass harbors a relatively typical microbial assemblage. Still, we were able to decipher an impact of the provinces, defined for the surface ocean, on the environment and the dark ocean diversity of microbes in different deep water masses. Thus, our results suggest a far more complex dark ocean microbial biogeography than hitherto assumed.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Hendrick M. Van Aken, Royal Netherlands Institute for Sea Research - Netherlands
  • J. J. M. Van Haren, Royal Netherlands Institute for Sea Research - Netherlands

Research Output

  • 486 Citations
  • 12 Publications
Publications
  • 2025
    Title Comparison of picolyl azide-based BONCAT and microautoradiography for assessing the heterotrophic prokaryotic activity in the deep ocean
    DOI 10.1101/2025.10.20.683375
    Type Preprint
    Author Amano C
    Pages 2025.10.20.683375
    Link Publication
  • 2016
    Title Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic
    DOI 10.3389/fmicb.2016.01670
    Type Journal Article
    Author Baltar F
    Journal Frontiers in Microbiology
    Pages 1670
    Link Publication
  • 2016
    Title Depth Dependent Relationships between Temperature and Ocean Heterotrophic Prokaryotic Production
    DOI 10.3389/fmars.2016.00090
    Type Journal Article
    Author Lønborg C
    Journal Frontiers in Marine Science
    Pages 90
    Link Publication
  • 2016
    Title Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water
    DOI 10.1111/1462-2920.13237
    Type Journal Article
    Author Frank A
    Journal Environmental Microbiology
    Pages 2052-2063
    Link Publication
  • 2016
    Title Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean
    DOI 10.3354/ame01792
    Type Journal Article
    Author Frank A
    Journal Aquatic Microbial Ecology
    Pages 99-110
    Link Publication
  • 2022
    Title Impact of hydrostatic pressure on organic carbon cycling of the deep-sea microbiome
    DOI 10.1101/2022.03.31.486587
    Type Preprint
    Author Amano C
    Pages 2022.03.31.486587
    Link Publication
  • 2022
    Title Limited carbon cycling due to high-pressure effects on the deep-sea microbiome
    DOI 10.1038/s41561-022-01081-3
    Type Journal Article
    Author Amano C
    Journal Nature Geoscience
    Pages 1041-1047
    Link Publication
  • 2022
    Title A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI)
    DOI 10.1002/lom3.10528
    Type Journal Article
    Author Amano C
    Journal Limnology and Oceanography: Methods
    Pages 69-81
    Link Publication
  • 2018
    Title Mixing alters the lytic activity of viruses in the dark ocean
    DOI 10.1002/ecy.2135
    Type Journal Article
    Author Winter C
    Journal Ecology
    Pages 700-713
    Link Publication
  • 2013
    Title Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic
    DOI 10.1371/journal.pone.0061051
    Type Journal Article
    Author Baltar F
    Journal PLoS ONE
    Link Publication
  • 2013
    Title Microbial control of the dark end of the biological pump
    DOI 10.1038/ngeo1921
    Type Journal Article
    Author Herndl G
    Journal Nature Geoscience
    Pages 718-724
    Link Publication
  • 2013
    Title Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water
    DOI 10.1002/2013gb004634
    Type Journal Article
    Author Reinthaler T
    Journal Global Biogeochemical Cycles
    Pages 1151-1162
    Link Publication

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