Multilevel analysis towards drought tolerance in Legumes
Multilevel analysis towards drought tolerance in Legumes
Disciplines
Biology (40%); Mathematics (10%); Physics, Astronomy (50%)
Keywords
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Systems Biology,
Proteins and Metabolites,
Mass Spectrometry,
Biomarker,
Medicago truncatula,
Abiotic Stress
One of the most crucial functions of plant cells is their ability to respond to alterations in their environment. Understanding the connections between initial responses and the downstream events that constitute successful adjustment to its fluctuating environment is one of the challenges of plant biology research. Investigations on transcript level are the most common studies so far. Besides transcript analyses, new technologies based on mass spectrometry allow for the comprehensive study on metabolite and protein level. Past studies have focussed on different stresses such as temperature, drought or salt using various plants and technologies. All these data have improved the understanding on the complexity of the plant response depending on the intensity and duration of homeostatic perturbation. However, due to the diversity of the research data and experimental conditions a comparison and integration is difficult or even impossible. Thus to gain better insights and to be able to visualise the complexity of the plant respond, integrative analyses combining different technologies and standardised cultivation conditions are becoming necessary. Legumes are major sources of vegetable protein and indispensable for sustainable agriculture due to their ability to fix atmospheric nitrogen via their symbiosis with soil rhizobia. These bacteria colonize legume roots in specialized organs called nodules. However, a full understanding of the interactive regulatory mechanisms between plant and bacteroids towards increased stress tolerance is not accomplished so far. To contribute to a deeper understanding of responses of legumes to major constraints, the proposed project aims at employing comparative systems biology. Supported by bioinformatic modelling strategies, novel metabolic and proteomic key mechanisms that may serve as regulatory targets for improving stress-tolerance in legumes will be identify.
Within this FWF funded Project, multilevel analyses and technological developments allowed the research group around Stefanie Wienkoop to describe so far unknown molecular mechanisms. In legumes (e.g. pea and bean) this mechanisms play fundamental roles for improved drought stress tolerance. Legumes are able to establish beneficial interactions (symbiosis) with rhizobia. The scientists found that this plant-rhizobia interaction plays a key role within stress response. Leaf senescence, induced by water deficiency, was decelerated through symbiotic interaction. This slowed senescence process, also called stay-green effect has also been observed in agriculture, but is not fully understood until now.Drought stress is a major cause for crop loss and thus plays an important role in the course of climate change. Legumes are principal source of protein nutrition for human. The directed application of specific rhizobia as a substitute for nitrogen fertilization may reduce costs in addition to improved drought stress tolerance.Besides a symbiotic priming effect that changed the molecular background of the plants (similar to inoculation), the team found some putative key molecules that may be relevant for future application in biotechnology towards improved stress tolerance. These insights may also be transferable to other plant families. One of those key molecules could already be evaluated within this project.
- Universität Wien - 100%
- Stefan Kempa, Helmholtz-Gemeinschaft Deutscher Forschungszentren - Germany
- Esther Maria Gonzalez, Public University of Navarre - Spain
- Michael K. Udvardi, The Samuel Roberts Noble Foundation - USA
Research Output
- 602 Citations
- 12 Publications
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2014
Title Automated Protein Turnover Calculations from 15N Partial Metabolic Labeling LC/MS Shotgun Proteomics Data DOI 10.1371/journal.pone.0094692 Type Journal Article Author Lyon D Journal PLoS ONE Link Publication -
2014
Title Targeted quantitative analysis of a diurnal RuBisCO subunit expression and translation profile in Chlamydomonas reinhardtii introducing a novel Mass Western approach DOI 10.1016/j.jprot.2014.09.026 Type Journal Article Author Recuenco-Muñoz L Journal Journal of Proteomics Pages 143-153 -
2014
Title mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data DOI 10.1371/journal.pone.0096188 Type Journal Article Author Doerfler H Journal PLoS ONE Link Publication -
2016
Title Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula * DOI 10.1074/mcp.m115.049205 Type Journal Article Author Lyon D Journal Molecular & Cellular Proteomics Pages 1921-1937 Link Publication -
2016
Title Evidence for a rhizobia-induced drought stress response strategy in Medicago truncatula DOI 10.1016/j.jprot.2016.01.006 Type Journal Article Author Staudinger C Journal Journal of Proteomics Pages 202-213 Link Publication -
2013
Title Medicago truncatula Proteomics for Systems Biology: Novel Rapid Shotgun LC-MS Approach for Relative Quantification Based on Full-Scan Selective Peptide Extraction (Selpex) DOI 10.1007/978-1-62703-631-3_22 Type Book Chapter Author Castillejo M Publisher Springer Nature Pages 303-313 -
2012
Title Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism DOI 10.1007/s11306-012-0470-0 Type Journal Article Author Doerfler H Journal Metabolomics Pages 564-574 Link Publication -
2012
Title Possible Role of Nutritional Priming for Early Salt and Drought Stress Responses in Medicago truncatula DOI 10.3389/fpls.2012.00285 Type Journal Article Author Staudinger C Journal Frontiers in Plant Science Pages 285 Link Publication -
2012
Title Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform DOI 10.1007/s11306-012-0473-x Type Journal Article Author Mari A Journal Metabolomics Pages 599-607 Link Publication -
2015
Title Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism DOI 10.1111/tpj.12762 Type Journal Article Author Sainz M Journal The Plant Journal Pages 723-735 Link Publication -
2015
Title Medicago truncatula and Glycine max: Different Drought Tolerance and Similar Local Response of the Root Nodule Proteome DOI 10.1021/acs.jproteome.5b00617 Type Journal Article Author Gil-Quintana E Journal Journal of Proteome Research Pages 5240-5251 Link Publication -
2013
Title Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth* DOI 10.1074/mcp.m113.028100 Type Journal Article Author Ischebeck T Journal Molecular & Cellular Proteomics Pages 295-310 Link Publication