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Multilevel analysis towards drought tolerance in Legumes

Multilevel analysis towards drought tolerance in Legumes

Stefanie Wienkoop (ORCID: 0000-0003-3575-813X)
  • Grant DOI 10.55776/P23441
  • Funding program Principal Investigator Projects
  • Status ended
  • Start May 1, 2011
  • End May 31, 2014
  • Funding amount € 378,483

Disciplines

Biology (40%); Mathematics (10%); Physics, Astronomy (50%)

Keywords

    Systems Biology, Proteins and Metabolites, Mass Spectrometry, Biomarker, Medicago truncatula, Abiotic Stress

Abstract Final report

One of the most crucial functions of plant cells is their ability to respond to alterations in their environment. Understanding the connections between initial responses and the downstream events that constitute successful adjustment to its fluctuating environment is one of the challenges of plant biology research. Investigations on transcript level are the most common studies so far. Besides transcript analyses, new technologies based on mass spectrometry allow for the comprehensive study on metabolite and protein level. Past studies have focussed on different stresses such as temperature, drought or salt using various plants and technologies. All these data have improved the understanding on the complexity of the plant response depending on the intensity and duration of homeostatic perturbation. However, due to the diversity of the research data and experimental conditions a comparison and integration is difficult or even impossible. Thus to gain better insights and to be able to visualise the complexity of the plant respond, integrative analyses combining different technologies and standardised cultivation conditions are becoming necessary. Legumes are major sources of vegetable protein and indispensable for sustainable agriculture due to their ability to fix atmospheric nitrogen via their symbiosis with soil rhizobia. These bacteria colonize legume roots in specialized organs called nodules. However, a full understanding of the interactive regulatory mechanisms between plant and bacteroids towards increased stress tolerance is not accomplished so far. To contribute to a deeper understanding of responses of legumes to major constraints, the proposed project aims at employing comparative systems biology. Supported by bioinformatic modelling strategies, novel metabolic and proteomic key mechanisms that may serve as regulatory targets for improving stress-tolerance in legumes will be identify.

Within this FWF funded Project, multilevel analyses and technological developments allowed the research group around Stefanie Wienkoop to describe so far unknown molecular mechanisms. In legumes (e.g. pea and bean) this mechanisms play fundamental roles for improved drought stress tolerance. Legumes are able to establish beneficial interactions (symbiosis) with rhizobia. The scientists found that this plant-rhizobia interaction plays a key role within stress response. Leaf senescence, induced by water deficiency, was decelerated through symbiotic interaction. This slowed senescence process, also called stay-green effect has also been observed in agriculture, but is not fully understood until now.Drought stress is a major cause for crop loss and thus plays an important role in the course of climate change. Legumes are principal source of protein nutrition for human. The directed application of specific rhizobia as a substitute for nitrogen fertilization may reduce costs in addition to improved drought stress tolerance.Besides a symbiotic priming effect that changed the molecular background of the plants (similar to inoculation), the team found some putative key molecules that may be relevant for future application in biotechnology towards improved stress tolerance. These insights may also be transferable to other plant families. One of those key molecules could already be evaluated within this project.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Stefan Kempa, Helmholtz-Gemeinschaft Deutscher Forschungszentren - Germany
  • Esther Maria Gonzalez, Public University of Navarre - Spain
  • Michael K. Udvardi, The Samuel Roberts Noble Foundation - USA

Research Output

  • 602 Citations
  • 12 Publications
Publications
  • 2014
    Title Automated Protein Turnover Calculations from 15N Partial Metabolic Labeling LC/MS Shotgun Proteomics Data
    DOI 10.1371/journal.pone.0094692
    Type Journal Article
    Author Lyon D
    Journal PLoS ONE
    Link Publication
  • 2014
    Title Targeted quantitative analysis of a diurnal RuBisCO subunit expression and translation profile in Chlamydomonas reinhardtii introducing a novel Mass Western approach
    DOI 10.1016/j.jprot.2014.09.026
    Type Journal Article
    Author Recuenco-Muñoz L
    Journal Journal of Proteomics
    Pages 143-153
  • 2014
    Title mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data
    DOI 10.1371/journal.pone.0096188
    Type Journal Article
    Author Doerfler H
    Journal PLoS ONE
    Link Publication
  • 2016
    Title Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula *
    DOI 10.1074/mcp.m115.049205
    Type Journal Article
    Author Lyon D
    Journal Molecular & Cellular Proteomics
    Pages 1921-1937
    Link Publication
  • 2016
    Title Evidence for a rhizobia-induced drought stress response strategy in Medicago truncatula
    DOI 10.1016/j.jprot.2016.01.006
    Type Journal Article
    Author Staudinger C
    Journal Journal of Proteomics
    Pages 202-213
    Link Publication
  • 2013
    Title Medicago truncatula Proteomics for Systems Biology: Novel Rapid Shotgun LC-MS Approach for Relative Quantification Based on Full-Scan Selective Peptide Extraction (Selpex)
    DOI 10.1007/978-1-62703-631-3_22
    Type Book Chapter
    Author Castillejo M
    Publisher Springer Nature
    Pages 303-313
  • 2012
    Title Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism
    DOI 10.1007/s11306-012-0470-0
    Type Journal Article
    Author Doerfler H
    Journal Metabolomics
    Pages 564-574
    Link Publication
  • 2012
    Title Possible Role of Nutritional Priming for Early Salt and Drought Stress Responses in Medicago truncatula
    DOI 10.3389/fpls.2012.00285
    Type Journal Article
    Author Staudinger C
    Journal Frontiers in Plant Science
    Pages 285
    Link Publication
  • 2012
    Title Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform
    DOI 10.1007/s11306-012-0473-x
    Type Journal Article
    Author Mari A
    Journal Metabolomics
    Pages 599-607
    Link Publication
  • 2015
    Title Leghemoglobin is nitrated in functional legume nodules in a tyrosine residue within the heme cavity by a nitrite/peroxide-dependent mechanism
    DOI 10.1111/tpj.12762
    Type Journal Article
    Author Sainz M
    Journal The Plant Journal
    Pages 723-735
    Link Publication
  • 2015
    Title Medicago truncatula and Glycine max: Different Drought Tolerance and Similar Local Response of the Root Nodule Proteome
    DOI 10.1021/acs.jproteome.5b00617
    Type Journal Article
    Author Gil-Quintana E
    Journal Journal of Proteome Research
    Pages 5240-5251
    Link Publication
  • 2013
    Title Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth*
    DOI 10.1074/mcp.m113.028100
    Type Journal Article
    Author Ischebeck T
    Journal Molecular & Cellular Proteomics
    Pages 295-310
    Link Publication

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