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Transition Metal Analogues of B12-Cofactors

Transition Metal Analogues of B12-Cofactors

Bernhard Kräutler (ORCID: 0000-0002-2222-0587)
  • Grant DOI 10.55776/P28892
  • Funding program Principal Investigator Projects
  • Status ended
  • Start January 11, 2016
  • End April 10, 2020
  • Funding amount € 293,517
  • Project website

Disciplines

Chemistry (100%)

Keywords

    Antivitamin, Vitamin B12, Transition Metal Complex, Spectroscopy, Organic Metallic Chemistry, Natural Product Synthesis

Abstract Final report

Vitamin B12 and related cobalamins (Cbls) are indispensable micro-nutrients, important for humans, animals and a broad range of other living organisms. Natural B12-derivatives are an exclusive domain of cobalt-complexes of the characteristic and unique corrin-ligand. The question why cobalt is so specifically essential for the biological roles of B12-derivatives? has frequently been asked. Surprisingly, this fundamental question cannot be answered nowadays, since corrin-complexes with metals other than cobalt have hardly become accessible. Comparison of their properties with those of vitamin B12 and other Cbls would help clarify the specific role of cobalt in Cbls. This project will open the hardly explored territory of metal analogues of Cbls (metbalamins). To reach this goal, a metal-free analogue of vitamin B12 will be first prepared, making use of recent biotechnological developments. Subsequent incorporation of (transition) metals will require purely chemical methods and will furnish a range of corresponding metbalamins. We will, thus, explore a strategy of combining the current means of chemistry and of synthetic biology to generate a selection of metbalamins. A focus of the project will be on investigations with rhodium and iridium. Metbalamins of these group-IX homologues of cobalt, i.e. rhodibalamins (Rhbls) and iridibalamins (Irbls), are presumed to feature chemistry related to that of the Cbls: Rhbls and Irbls are expected to show structures rather similar to those of the biologically important Cbls, but not to mimic closely their reactivity. This hypothesis will be tested thoroughly, in this project. Structure and reactivity of Rhbls and Irbls will be investigated in detail, with a focus on derivatives related to the biologically relevant organometallic B12-cofactors. In representative bio-chemical studies with Rhbls and Irbls basic consequences of the replacement of cobalt (in Cbls) will be tested. Rhbls and Irbls may be effective inhibitors of B12- dependent metabolic processes, thus representing potent B12-antimetabolites or antivitamins B12. Selected, other metbalamins will be prepared, and will likewise be studied extensively. They are presumed to display a range of structures and reactivity, less related, typically, to those of known B12- derivatives. The insights gained with transition-metal corrinoids will, first of all, help to answer the old cobalt-question. These studies will, thus, expand the specific horizon of basic research on vitamin B12. It will also contribute to modern bio-inorganic and organometallic chemistry, as well as to current B12-related topics of interests. Indeed, the eventual availability of potent antivitamins B12 on the basis of suitable metbalamins is expected to provide opportunities to learn more about the still puzzling biological roles of B12-derivatives in humans and elsewhere in the living Nature, and giving the scientific basis for the development of novel biological and bio-medicinal tools.

Project P-28892 Abstract The complex and highly structured B12-vitamins represent a specific combination of the unique natural corrin ligand and the transition metal cobalt. The basis of the exceptional reactivity of cobalt in the B12-cofactors is an old key question in a field that concerns all kingdoms of life, including us humans. This project was to contribute to this intriguing question indirectly, by extending research in the B12-field to metal analogues of vitamin B12. Interestingly, to date, the topic of the transition-metal analogues of the natural cobalt-corrins, collectively named metbalamins, has suffered from a lack of an efficient access to such fully characterized B12-metal analogues. Unfortunately, an apparently obvious path to metbalamins has had no success that relies on the removal of the cobalt centre from vitamin B12 and its replacement by incorporation of other metal ions in the so generated metal-free corrin ligand. However, sparked by a combined chemical-biological total synthesis of adenosylrhodibalamin, the Rh(III)-homologue of the Co(III)-corrin coenzyme B12, this project has led to two practical and presumably general methodologies for the synthesis of metbalamins, both starting with the biosynthetic B12-ligand hydrogenobyric acid. The structural analysis of this unique metal-free corrin has provided profound insights into the 'molecular logic' of the B12-deriatives. The incorporation of the transition metals rhodium, nickel and zinc allowed the detailed chemical characterization of the corresponding metbalamins that represent structural mimics of biocatalytically relevant vitamin B12-derivatives carrying either hexa-coordinate, penta-coordinate or tetra-coordinate cobalt centres. Thus, these B12-metal analogues represent a full set of structural B12-mimics, considered perfect B12-dummies or potential antivitamins B12. The metbalamins promise to be useful in biochemical, biological, bio-structural and biomedical investigations related to the still puzzling biological roles of vitamin B12, as well as exploring the physiological roles of vitamin B12 and the pathological effects of B12-deficiency in humans. Studies with antivitamins B12 relating to age- and nutrition-related neuropathological effects of B12-deficiency may be particularly helpful and important in this growing area of topical biomedical research. The specific metal based potential antivitamins B12, generated here, also promise to find broader application as inhibitors of cell growth and proliferation, an essential role of anti-cancerous agents. In addition, some transition metal based B12-mimics may qualify as B12-antimetabolites that pave an alternative route to drugs useful in the fight against hospital resistant bacteria. Hence, further research with metbalamins may lead to a novel class of antibiotics. Our engagement in basic chemical and chemical-biological research may thus eventually provide metal complexes that could enlarge today's molecular toolbox in the medicinal and pharmaceutical sciences.

Research institution(s)
  • Universität Innsbruck - 100%
International project participants
  • Peter Chen, Eidgenössische Technische Hochschule Zürich - Switzerland
  • Roseanne J Sension, University of Michigan - USA
  • Ruma Banerjee, University of Michigan Medical School - USA
  • Martin Warren, University of Kent at Canterbury

Research Output

  • 361 Citations
  • 30 Publications
Publications
  • 2024
    Title The Rhodium Analogue of Coenzyme B12 as an Anti-Photoregulatory Ligand Inhibiting Bacterial CarH Photoreceptors
    DOI 10.1002/anie.202401626
    Type Journal Article
    Author Pérez-Castaño R
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2024
    Title The Rhodium Analogue of Coenzyme B12 as an Anti-Photoregulatory Ligand Inhibiting Bacterial CarH Photoreceptors
    DOI 10.1002/ange.202401626
    Type Journal Article
    Author Pérez-Castaño R
    Journal Angewandte Chemie
    Link Publication
  • 2021
    Title Surprising Homolytic Gas Phase Co-C Bond Dissociation Energies of Organometallic Aryl-Cobinamides Reveal Notable Non-Bonded Intramolecular Interactions
    DOI 10.1002/chem.202004589
    Type Journal Article
    Author Tsybizova A
    Journal Chemistry – A European Journal
    Pages 7252-7264
    Link Publication
  • 2025
    Title Encasing the paramagnetic copper( ii )-ion by the ring-contracted corrin ligand of vitamin B 12
    DOI 10.1039/d5cc02129d
    Type Journal Article
    Author Kieninger C
    Journal Chemical Communications
    Pages 10606-10609
    Link Publication
  • 2025
    Title Engineering biology and chemical approaches to the construction of vitamin B12 analogues and antivitamins B12 as probes and therapeutic agents
    DOI 10.1016/bs.ampbs.2025.07.003
    Type Book Chapter
    Author Paxhia M
    Publisher Elsevier
    Pages 257-298
  • 2025
    Title B12-Cofactor Inactivation by Cobalt to Rhodium Mutation in Methylrhodibalamin: An Antivitamin B12 and Antibiotic
    DOI 10.1002/ceur.202500157
    Type Journal Article
    Author Widner F
    Journal ChemistryEurope
    Link Publication
  • 2020
    Title Replacement of the Cobalt Center of Vitamin B12 by Nickel: Nibalamin and Nibyric Acid Prepared from Metal-Free B12 Ligands Hydrogenobalamin and Hydrogenobyric Acid
    DOI 10.1002/ange.202008407
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie
    Pages 20304-20311
    Link Publication
  • 2020
    Title Replacement of the Cobalt Center of Vitamin B12 by Nickel: Nibalamin and Nibyric Acid Prepared from Metal-Free B12 Ligands Hydrogenobalamin and Hydrogenobyric Acid
    DOI 10.1002/anie.202008407
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie International Edition
    Pages 20129-20136
    Link Publication
  • 2020
    Title Ultrafast Excited State Dynamics and Fluorescence from Vitamin B12 and Organometallic [Co]–C?C–R Cobalamins
    DOI 10.1021/acs.jpcb.0c04886
    Type Journal Article
    Author Salerno E
    Journal The Journal of Physical Chemistry B
    Pages 6651-6656
    Link Publication
  • 2020
    Title 6. Organometallic B12-derivatives in life processes
    DOI 10.1515/9783110496574-006
    Type Book Chapter
    Author Kräutler B
    Publisher De Gruyter
    Pages 243-284
  • 2020
    Title Antivitamins B12—Some Inaugural Milestones
    DOI 10.1002/chem.202003788
    Type Journal Article
    Author Kräutler B
    Journal Chemistry – A European Journal
    Pages 15438-15445
    Link Publication
  • 2025
    Title Adenosylrhodibinamide and methylrhodibinamide – organometallic rhodium analogues of the natural cobinamides
    DOI 10.1142/s1088424625500348
    Type Journal Article
    Author Widner F
    Journal Journal of Porphyrins and Phthalocyanines
    Pages 408-417
  • 2019
    Title Chapter 20 Biological Organometallic Chemistry of Vitamin B12-Derivatives
    DOI 10.1016/b978-0-12-814197-7.00020-0
    Type Book Chapter
    Author Kräutler B
    Publisher Elsevier
    Pages 399-430
  • 2019
    Title The Hydrogenobyric Acid Structure Reveals the Corrin Ligand as an Entatic State Module Empowering B12 Cofactors for Catalysis
    DOI 10.1002/anie.201904713
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie International Edition
    Pages 10756-10760
    Link Publication
  • 2019
    Title Die Hydrogenobyrsäure-Struktur enthüllt den Corrin-Liganden als entatisches Zustandsmodul zur Steigerung der Katalyseaktivität von B12-Cofaktoren
    DOI 10.1002/ange.201904713
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie
    Pages 10869-10873
    Link Publication
  • 2019
    Title Zinc Substitution of Cobalt in Vitamin B12: Zincobyric acid and Zincobalamin as Luminescent Structural B12-Mimics
    DOI 10.1002/ange.201908428
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie
    Pages 14710-14714
    Link Publication
  • 2019
    Title Zinc Substitution of Cobalt in Vitamin B12: Zincobyric acid and Zincobalamin as Luminescent Structural B12-Mimics
    DOI 10.1002/anie.201908428
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie International Edition
    Pages 14568-14572
    Link Publication
  • 2016
    Title Totalsynthese, Struktur und biologische Aktivität von Adenosylrhodibalamin, dem unnatürlichen Rhodiumhomologen von Coenzym B12
    DOI 10.1002/ange.201603738
    Type Journal Article
    Author Widner F
    Journal Angewandte Chemie
    Pages 11451-11456
    Link Publication
  • 2016
    Title Toward the Design of Photoresponsive Conditional Antivitamins B12: A Transient Absorption Study of an Arylcobalamin and an Alkynylcobalamin
    DOI 10.1021/jacs.6b05299
    Type Journal Article
    Author Miller N
    Journal Journal of the American Chemical Society
    Pages 14250-14256
  • 2016
    Title Coenzym B12 – umfunktioniert für die Photoregulation der Genexpression
    DOI 10.1002/ange.201601120
    Type Journal Article
    Author Gruber K
    Journal Angewandte Chemie
    Pages 5728-5730
  • 2016
    Title Coenzyme B12 Repurposed for Photoregulation of Gene Expression
    DOI 10.1002/anie.201601120
    Type Journal Article
    Author Gruber K
    Journal Angewandte Chemie International Edition
    Pages 5638-5640
  • 2016
    Title Total Synthesis, Structure, and Biological Activity of Adenosylrhodibalamin, the Non-Natural Rhodium Homologue of Coenzyme B12
    DOI 10.1002/anie.201603738
    Type Journal Article
    Author Widner F
    Journal Angewandte Chemie International Edition
    Pages 11281-11286
    Link Publication
  • 2018
    Title In My Element: Cobalt
    DOI 10.1002/chem.201805804
    Type Journal Article
    Author Kräutler B
    Journal Chemistry – A European Journal
    Pages 4870-4870
    Link Publication
  • 2020
    Title Synthesis, Spectral Characterization and Crystal Structure of Chlororhodibalamin: A Synthesis Platform for Rhodium Analogues of Vitamin B12 and for Rh-Based Antivitamins B12
    DOI 10.1055/s-0040-1707288
    Type Journal Article
    Author Kräutler B
    Journal Synthesis
    Pages 332-337
    Link Publication
  • 2020
    Title Exceptional Photochemical Stability of the Co–C Bond of Alkynyl Cobalamins, Potential Antivitamins B12 and Core Elements of B12-Based Biological Vectors
    DOI 10.1021/acs.inorgchem.0c00453
    Type Journal Article
    Author Salerno E
    Journal Inorganic Chemistry
    Pages 6422-6431
    Link Publication
  • 2017
    Title Inhibierung des humanen B12-verarbeitenden Enzyms CblC durch Antivitamine B12 – Kristallstruktur des inaktiven ternären Komplexes mit dem Kosubstrat Glutathion
    DOI 10.1002/ange.201701583
    Type Journal Article
    Author Ruetz M
    Journal Angewandte Chemie
    Pages 7493-7498
  • 2017
    Title Antivitamin B12 Inhibition of the Human B12-Processing Enzyme CblC: Crystal Structure of an Inactive Ternary Complex with Glutathione as the Cosubstrate
    DOI 10.1002/anie.201701583
    Type Journal Article
    Author Ruetz M
    Journal Angewandte Chemie International Edition
    Pages 7387-7392
    Link Publication
  • 2017
    Title Alpha- and Beta-Diastereoisomers of Phenylcobalamin from Cobalt-Arylation with Diphenyliodonium Chloride
    DOI 10.1002/chem.201701514
    Type Journal Article
    Author Brenig C
    Journal Chemistry – A European Journal
    Pages 9726-9731
  • 2017
    Title Organometallic DNA–B12 Conjugates as Potential Oligonucleotide Vectors: Synthesis and Structural and Binding Studies with Human Cobalamin-Transport Proteins
    DOI 10.1002/cbic.201700472
    Type Journal Article
    Author Mutti E
    Journal ChemBioChem
    Pages 2280-2291
  • 2017
    Title Partial Synthesis of Coenzyme B12 from Cobyric Acid
    DOI 10.1002/hlca.201700170
    Type Journal Article
    Author Widner F
    Journal Helvetica Chimica Acta

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