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Shedding light on dark ocean’s detrital particles

Shedding light on dark ocean’s detrital particles

Gerhard J. Herndl (ORCID: 0000-0002-2223-2852)
  • Grant DOI 10.55776/P35587
  • Funding program Principal Investigator Projects
  • Status ended
  • Start June 1, 2022
  • End October 31, 2025
  • Funding amount € 590,247

Disciplines

Biology (50%); Geosciences (50%)

Keywords

    Deep Sea, Particle Flux, Marine Snow, Metaproteomics, Biological Carbon Pump, Microbes

Abstract Final report

There is a major mismatch between the organic matter supply and the organic matter demand of the heterotrophic organisms inhabiting the deep-sea. The consumption of organic matter is much higher than the organic matter flux in to the deep-ocean and this mismatch increasing with increasing depth reaching one order of magnitude at 1000 m depth. Resolving this discrepancy between organic matter supply and consumption is the goal of DEPOCA. We have evidence, based on earlier work, that there is a major stock of organic particles in the deep-sea which is not sinking through the oceanic water column but is neutrally buoyant and hence, transported horizontally through the water column. While the source of these buoyant particles is unknown, we do have evidence that these particles are heavily colonized by bacteria and fungi utilizing this material. The project DEPOCA aims at deciphering the source and fate of these particles in the deep waters of the North Atlantic. During a research expedition, sinking and neutrally buoyant particles will be collected and the age and source of these particles determined. Also, the microbial community composition and the activity of the microbes will be assessed. We expect that these neutrally buoyant particles, which escape routine measurements will resolve the enigma of the missing organic matter in the deep ocean.

The project revealed that in the open ocean deep-sea marine snow is inhabited by heterotrophic microbes, particularly, bacteria and fungi. While bacteria associated with marine snow accounted for less than 1% of the total bacterial abundance, they contributed more than 10% to total bacterial biomass production and 28% to total community respiration. This indicates that in the waters of the North Atlantic below 200 m depth, particle associated microbes are disproportionally active remineralizers of organic matter. Due to their high respiratory activity, particle associated bacteria exhibit a lower growth efficiency than the free-living microbial counterpart. The microbial community composition on marine snow is also strikingly different from that in the ambient water, indicating a specialized community develops on these sinking particles. In contrast non-sinking buoyant particles are resemble a bacterial community composition which is very similar to that of the ambient water collected at the same depth as these non-sinking particles. Single-cell respiration rates determined by redox-sensor-green, a fluorescent dye, indicated that hydrostatic pressure does not affect respiration of deep-sea bacteria. Hence, the respiration rate is insensitive to pressure changes. Overall, the project revealed that bacteria associated with detrital particles in the deep waters play an important role on remineralizing organic matter and thus, control to a large extent the sequestration of organic carbon in the ocean's interior.

Research institution(s)
  • Universität Wien - 100%

Research Output

  • 34 Citations
  • 8 Publications
  • 3 Methods & Materials
  • 1 Disseminations
  • 1 Fundings
Publications
  • 2026
    Title Single-cell heterotrophic activity in deep-ocean prokaryotic communities quantified by BONCAT and microautoradiography
    DOI 10.1093/ismeco/ycag038
    Type Journal Article
    Author Amano C
    Journal ISME Communications
  • 2026
    Title Major contribution of particle-associated microbes to deep-sea organic carbon degradation
    DOI 10.1002/lno.70310
    Type Journal Article
    Author Amano C
    Journal Limnology and Oceanography
  • 2024
    Title Substrate uptake patterns shape niche separation in marine prokaryotic microbiome.
    DOI 10.1126/sciadv.adn5143
    Type Journal Article
    Author Amano C
    Journal Science advances
  • 2024
    Title Functional vertical connectivity of microbial communities in the ocean.
    DOI 10.1126/sciadv.adj8184
    Type Journal Article
    Author Chen S
    Journal Science advances
  • 2023
    Title Database of nitrification and nitrifiers in the global ocean
    DOI 10.5194/essd-2023-194
    Type Preprint
    Author Tang W
  • 2023
    Title Database of nitrification and nitrifiers in the global ocean
    DOI 10.5194/essd-15-5039-2023
    Type Journal Article
    Author Tang W
    Journal Earth System Science Data
  • 2024
    Title Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean.
    DOI 10.1038/s41467-024-50867-z
    Type Journal Article
    Author Amano C
    Journal Nature communications
    Pages 6411
  • 2022
    Title Limited carbon cycling due to high-pressure effects on the deep-sea microbiome
    DOI 10.1038/s41561-022-01081-3
    Type Journal Article
    Author Amano C
    Journal Nature Geoscience
    Pages 1041-1047
    Link Publication
Methods & Materials
  • 2026
    Title inorganic nutrient analyses, microbial abundance and activity
    Type Biological samples
    Public Access
  • 2024 Link
    Title sequencing data
    DOI 10.5281/zenodo.10453786
    Type Biological samples
    Public Access
    Link Link
  • 2023
    Title jellyfish bloom decay
    DOI 10.1186/s40168-023-01598-8
    Type Biological samples
    Public Access
Disseminations
  • 2023
    Title interview on radio and TV and newspaper
    Type A broadcast e.g. TV/radio/film/podcast (other than news/press)
Fundings
  • 2025
    Title PIN3614124
    Type Research grant (including intramural programme)
    Start of Funding 2025
    Funder Austrian Science Fund (FWF)

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