Shedding light on dark ocean’s detrital particles
Shedding light on dark ocean’s detrital particles
Disciplines
Biology (50%); Geosciences (50%)
Keywords
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Deep Sea,
Particle Flux,
Marine Snow,
Metaproteomics,
Biological Carbon Pump,
Microbes
There is a major mismatch between the organic matter supply and the organic matter demand of the heterotrophic organisms inhabiting the deep-sea. The consumption of organic matter is much higher than the organic matter flux in to the deep-ocean and this mismatch increasing with increasing depth reaching one order of magnitude at 1000 m depth. Resolving this discrepancy between organic matter supply and consumption is the goal of DEPOCA. We have evidence, based on earlier work, that there is a major stock of organic particles in the deep-sea which is not sinking through the oceanic water column but is neutrally buoyant and hence, transported horizontally through the water column. While the source of these buoyant particles is unknown, we do have evidence that these particles are heavily colonized by bacteria and fungi utilizing this material. The project DEPOCA aims at deciphering the source and fate of these particles in the deep waters of the North Atlantic. During a research expedition, sinking and neutrally buoyant particles will be collected and the age and source of these particles determined. Also, the microbial community composition and the activity of the microbes will be assessed. We expect that these neutrally buoyant particles, which escape routine measurements will resolve the enigma of the missing organic matter in the deep ocean.
The project revealed that in the open ocean deep-sea marine snow is inhabited by heterotrophic microbes, particularly, bacteria and fungi. While bacteria associated with marine snow accounted for less than 1% of the total bacterial abundance, they contributed more than 10% to total bacterial biomass production and 28% to total community respiration. This indicates that in the waters of the North Atlantic below 200 m depth, particle associated microbes are disproportionally active remineralizers of organic matter. Due to their high respiratory activity, particle associated bacteria exhibit a lower growth efficiency than the free-living microbial counterpart. The microbial community composition on marine snow is also strikingly different from that in the ambient water, indicating a specialized community develops on these sinking particles. In contrast non-sinking buoyant particles are resemble a bacterial community composition which is very similar to that of the ambient water collected at the same depth as these non-sinking particles. Single-cell respiration rates determined by redox-sensor-green, a fluorescent dye, indicated that hydrostatic pressure does not affect respiration of deep-sea bacteria. Hence, the respiration rate is insensitive to pressure changes. Overall, the project revealed that bacteria associated with detrital particles in the deep waters play an important role on remineralizing organic matter and thus, control to a large extent the sequestration of organic carbon in the ocean's interior.
- Universität Wien - 100%
Research Output
- 34 Citations
- 8 Publications
- 3 Methods & Materials
- 1 Disseminations
- 1 Fundings
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2026
Title Single-cell heterotrophic activity in deep-ocean prokaryotic communities quantified by BONCAT and microautoradiography DOI 10.1093/ismeco/ycag038 Type Journal Article Author Amano C Journal ISME Communications -
2026
Title Major contribution of particle-associated microbes to deep-sea organic carbon degradation DOI 10.1002/lno.70310 Type Journal Article Author Amano C Journal Limnology and Oceanography -
2024
Title Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. DOI 10.1126/sciadv.adn5143 Type Journal Article Author Amano C Journal Science advances -
2024
Title Functional vertical connectivity of microbial communities in the ocean. DOI 10.1126/sciadv.adj8184 Type Journal Article Author Chen S Journal Science advances -
2023
Title Database of nitrification and nitrifiers in the global ocean DOI 10.5194/essd-2023-194 Type Preprint Author Tang W -
2023
Title Database of nitrification and nitrifiers in the global ocean DOI 10.5194/essd-15-5039-2023 Type Journal Article Author Tang W Journal Earth System Science Data -
2024
Title Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. DOI 10.1038/s41467-024-50867-z Type Journal Article Author Amano C Journal Nature communications Pages 6411 -
2022
Title Limited carbon cycling due to high-pressure effects on the deep-sea microbiome DOI 10.1038/s41561-022-01081-3 Type Journal Article Author Amano C Journal Nature Geoscience Pages 1041-1047 Link Publication
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2026
Title inorganic nutrient analyses, microbial abundance and activity Type Biological samples Public Access -
2024
Link
Title sequencing data DOI 10.5281/zenodo.10453786 Type Biological samples Public Access Link Link -
2023
Title jellyfish bloom decay DOI 10.1186/s40168-023-01598-8 Type Biological samples Public Access
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2023
Title interview on radio and TV and newspaper Type A broadcast e.g. TV/radio/film/podcast (other than news/press)
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2025
Title PIN3614124 Type Research grant (including intramural programme) Start of Funding 2025 Funder Austrian Science Fund (FWF)