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A new paradigm for genomic imprinting

A new paradigm for genomic imprinting

Frédéric Berger (ORCID: 0000-0002-3609-8260)
  • Grant DOI 10.55776/P36231
  • Funding program Principal Investigator Projects
  • Status ongoing
  • Start September 1, 2022
  • End August 31, 2026
  • Funding amount € 399,541
  • Project website

Disciplines

Biology (100%)

Keywords

    Chromatin, Genome, Marchantia, Epigenetics, Imprinting

Abstract

Development of embryos depends on mothers in many organisms. This is the case in viviparous animals but also in liverworts which are relative of mosses. We discovered that the liverwort Marchantia represses the paternal chromosomes in the embryo. Hence, the embryo development depends primarily on the expression of the maternal genes. This paternal chromosome repression (PCR) is mediated by the deposition of the repressive modification of histone H3 -H3K27me3, which is an epigenetic mark maintained through cell division. This proposal is dedicated to find the mechanisms that install PCR and how PCR breaks down. We will use biochemistry and genetics to find the process that cause silencing of the paternal genome before its fusion with the maternal genome at fertilization. We will explore how a protein that binds to the repressive epigenetic mark is involved in the maintenance of PCR through spatial segregation and compaction of the paternal genome. We will identify the regulation of this protein that cause the breakdown of PCR at the end of embryogenesis. The study of PCR will expand our mechanistic understanding of epigenetic repression and provide cues to find similar mechanisms in viviparous animals. 1

Research institution(s)
  • Gregor Mendel Institute of Molecular Plant Biology - 100%

Research Output

  • 27 Citations
  • 7 Publications
  • 1 Datasets & models
  • 1 Scientific Awards
Publications
  • 2025
    Title Nucleosome Positioning Shapes Cryptic Antisense Transcription
    DOI 10.1101/2025.07.14.664753
    Type Preprint
    Author Kok J
    Pages 2025.07.14.664753
    Link Publication
  • 2025
    Title Conservation of chromatin states and their association with transcription factors in land plants
    DOI 10.1101/2025.07.12.664529
    Type Preprint
    Author Shukla V
    Pages 2025.07.12.664529
    Link Publication
  • 2022
    Title The ancestral chromatin landscape of land plants
    DOI 10.1101/2022.10.21.513199
    Type Preprint
    Author Hisanaga T
    Pages 2022.10.21.513199
    Link Publication
  • 2024
    Title Meiosis as a mechanism for epigenetic reprogramming and cellular rejuvenation.
    DOI 10.1242/dev.203046
    Type Journal Article
    Author Berger F
    Journal Development (Cambridge, England)
  • 2023
    Title Paternal imprinting in Marchantia polymorpha
    DOI 10.1111/nph.19377
    Type Journal Article
    Author Montgomery S
    Journal New Phytologist
    Pages 1000-1006
    Link Publication
  • 2023
    Title Epigenetic reprogramming of imprinting at meiosis
    DOI 10.1101/2023.05.17.541143
    Type Preprint
    Author Montgomery S
    Pages 2023.05.17.541143
    Link Publication
  • 2023
    Title The ancestral chromatin landscape of land plants
    DOI 10.1111/nph.19311
    Type Journal Article
    Author Hisanaga T
    Journal New Phytologist
    Pages 2085-2101
    Link Publication
Datasets & models
  • 2022 Link
    Title Cam-2 whole-genome sequencing
    Type Database/Collection of data
    Public Access
    Link Link
Scientific Awards
  • 2024
    Title Keynote for the epigenetic symposium at IPMB
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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