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Mucosal Lesion Analysis of HD digital Chromocolonoscopy using Wavelets

Mucosal Lesion Analysis of HD digital Chromocolonoscopy using Wavelets

Andreas Uhl (ORCID: 0000-0002-5921-8755)
  • Grant DOI 10.55776/TRP206
  • Funding program Translational Research
  • Status ended
  • Start June 1, 2011
  • End October 31, 2014
  • Funding amount € 344,030

Disciplines

Other Human Medicine, Health Sciences (50%); Computer Sciences (40%); Clinical Medicine (10%)

Keywords

    High Definition Colonoscopy, Digital Chromoendoscopy, Computed Virtual Chromoendoscopy, Pit Pattern/Vascular Pattern/Texture Classificatio, Decision Support System, Wavelets

Abstract Final report

According to the American Cancer Society colon cancer ist the third most common type of cancer in males and fourth in females in western countries. Therefore screening programs have been established worldwide in order to detect lesions with a malignant potential or early cancer. The current goldstandard for the detection of lesions in the colon is flexible video-endoscopy. The colonoscope allows a physician or surgeon to examine the colon and the distal part of the ileum and to take tissue samples. Modern colonoscopes are using high resolution CCD and storage of pictures and video sequences can be done using additional hardware. Therefore, analysis of images or video sequences with the assistance of computers is possible in principle. This allows computer assisted detection and classification of lesions. Recently, high definition (HD and HD+) endoscopy has been introduced into the market and is becoming quickly the de-facto standard in medical centers. Major manufacturers are offering corresponding technology, e.g. Olympus EVIS EXARA II or Pentax HiLINE HD+, and this technology is being adopted quickly in colonoscopy. The combination of digital chromoendoscopy and HD-endoscopy leads to characteristic mucosal surface patterns which can be interpreted by an experienced examiner. However, result accuracy is limited by about 90\% - 95\% and also inter-examiner variability has been reporteted recently and require to improve the results for clinical deployment in e.g. screening programs. Consequently, this project proposal aims at developing techniques for a computer assisted clinical assessment employing and comparing different types of wavelet-based techniques for an automated classification of visual data aquired by a HD colonoscope using digital virtual chromoendoscopy (Pentax i-Scan) corresponding to different types of lesions. Besides establishing a database of HD texture patches with available ground truth with respect to histopathologic ground truth, a collection of preprocessing, wavelet-based feaure extraction and classification algorithms will be developed to result in a prototype decision support system, which will be assessed in a clinical study.

According to the American Cancer Society colon cancer is the third most common type of cancer in males and fourth in females in western countries. Therefore screening programs have been established worldwide in order to detect lesions with a malignant potential or early cancer. The current goldstandard for the detection of lesions in the colon is flexible video-endoscopy. The colonoscope allows a physician or surgeon to examine the colon and the distal part of the ileum and to take tissue samples. Modern colonoscopes are using high resolution CCD and storage of pictures and video sequences can be done using additional hardware. Therefore, analysis of images or video sequences with the assistance of computers is possible in principle. This allows computer assisted detection and classification of lesions.Recently, high definition (HD and HD+) endoscopy has been introduced into the market and is becoming quickly the de-facto standard in medical centers. Major manufacturers are offering corresponding technology, e.g. Olympus EVIS EXARA II or Pentax HiLINE HD+, and this technology is being adopted quickly in colonoscopy. The combination of digital chromoendoscopy and HD-endoscopy leads to characteristic mucosal surface patterns which can be interpreted by an experienced examiner. However, result accuracy is limited by about 90\% - 95\% and also inter-examiner variability has been reported recently and requires to improve the results for clinical deployment in e.g. screening programs.Consequently, this project has developed techniques for a computer assisted clinical assessment of colonic polys employing and comparing different types of wavelet-based and other techniques for an automated classification of visual data acquired by a HD colonoscope using digital virtual chromoendoscopy (Pentax i-Scan) corresponding to different types of lesions. Besides establishing a database of HD texture patches with available histopathologic ground truth, a collection of preprocessing, (wavelet-based) feature extraction and classification algorithms have been developed to result in a prototype polyp dignity assessment decision support system.

Research institution(s)
  • Krankenhaus St. Elisabeth - 15%
  • Universität Salzburg - 85%
Project participants
  • Michael Häfner, Krankenhaus St. Elisabeth , associated research partner

Research Output

  • 368 Citations
  • 20 Publications
Publications
  • 2015
    Title Colonic Polyp Classification in High-Definition Video Using Complex Wavelet-Packets
    DOI 10.1007/978-3-662-46224-9_63
    Type Book Chapter
    Author Häfner M
    Publisher Springer Nature
    Pages 365-370
  • 2015
    Title A scale- and orientation-adaptive extension of Local Binary Patterns for texture classification
    DOI 10.1016/j.patcog.2015.02.024
    Type Journal Article
    Author Hegenbart S
    Journal Pattern Recognition
    Pages 2633-2644
    Link Publication
  • 2012
    Title Evaluation of Cross-validation Protocols for the Classification of Endoscopic Images of Colonic Polyps
    DOI 10.1109/cbms.2012.6266355
    Type Conference Proceeding Abstract
    Author Häfner M
    Pages 1-6
  • 2011
    Title Computer-Aided Decision Support Systems for Endoscopy in the Gastrointestinal Tract: A Review
    DOI 10.1109/rbme.2011.2175445
    Type Journal Article
    Author Liedlgruber M
    Journal IEEE Reviews in Biomedical Engineering
    Pages 73-88
  • 2014
    Title Bridging the Resolution Gap Between Endoscope Types for a Colonic Polyp Classification
    DOI 10.1109/icpr.2014.472
    Type Conference Proceeding Abstract
    Author Häfner M
    Pages 2739-2744
  • 2014
    Title Degradation Adaptive Texture Classification
    DOI 10.1109/icip.2014.7025558
    Type Conference Proceeding Abstract
    Author Gadermayr M
    Pages 2759-2763
    Link Publication
  • 2014
    Title Shape and Size Adapted Local Fractal Dimension for the Classification of Polyps in HD Colonoscopy
    DOI 10.1109/icip.2014.7025466
    Type Conference Proceeding Abstract
    Author Uhl A
    Pages 2299-2303
  • 2014
    Title A Scale-Adaptive Extension to Methods Based on LBP Using Scale-Normalized Laplacian of Gaussian Extrema in Scale-Space
    DOI 10.1109/icassp.2014.6854417
    Type Conference Proceeding Abstract
    Author Hegenbart S
    Pages 4319-4323
  • 2014
    Title Scale-Adaptive Texture Classification
    DOI 10.1109/icpr.2014.457
    Type Conference Proceeding Abstract
    Author Gadermayr M
    Pages 2643-2648
    Link Publication
  • 2014
    Title Comparison of Super-Resolution Methods for HD-Video Endoscopy
    DOI 10.1007/978-3-642-54111-7_19
    Type Book Chapter
    Author Häfner M
    Publisher Springer Nature
    Pages 78-83
  • 2014
    Title Evaluation of Super-Resolution Methods in the Context of Colonic Polyp Classification.
    Type Conference Proceeding Abstract
    Author Häfner M
  • 2014
    Title Evaluation Of Super-Resolution Methods In The Context Of Colonic Polyp Classification
    DOI 10.1109/cbmi.2014.6849830
    Type Conference Proceeding Abstract
    Author Häfner M
    Pages 1-6
  • 2013
    Title Super-Resolution Techniques Evaluated in the Context of HD Endoscopic Imaging.
    Type Journal Article
    Author Häfner M
    Journal Department of Computer Sciences, University of Salzburg, Austria, Technical Report 2013-04, 2013
  • 2013
    Title Scale invariant texture descriptors for classifying celiac disease
    DOI 10.1016/j.media.2013.02.001
    Type Journal Article
    Author Hegenbart S
    Journal Medical Image Analysis
    Pages 458-474
    Link Publication
  • 2012
    Title Delaunay triangulation-based pit density estimation for the classification of polyps in high-magnification chromo-colonoscopy
    DOI 10.1016/j.cmpb.2011.12.012
    Type Journal Article
    Author Häfner M
    Journal Computer Methods and Programs in Biomedicine
    Pages 565-581
    Link Publication
  • 2014
    Title A systematic evaluation of the scale invariance of texture recognition methods
    DOI 10.1007/s10044-014-0435-1
    Type Journal Article
    Author Uhl A
    Journal Pattern Analysis and Applications
    Pages 945-969
    Link Publication
  • 2014
    Title A Novel Shape Feature Descriptor for the Classification of Polyps in HD Colonoscopy
    DOI 10.1007/978-3-319-05530-5_20
    Type Book Chapter
    Author Häfner M
    Publisher Springer Nature
    Pages 205-213
  • 2013
    Title POCS-based Super-Resolution for HD Endoscopy Video Frames
    DOI 10.1109/cbms.2013.6627786
    Type Conference Proceeding Abstract
    Author Häfner M
    Pages 185-190
  • 2013
    Title Customised Frequency Pre-filtering in a Local Binary Pattern-Based Classification of Gastrointestinal Images
    DOI 10.1007/978-3-642-36678-9_10
    Type Book Chapter
    Author Hegenbart S
    Publisher Springer Nature
    Pages 99-109
  • 2019
    Title Quest for the best endoscopic imaging modality for computer-assisted colonic polyp staging
    DOI 10.3748/wjg.v25.i10.1197
    Type Journal Article
    Author Wimmer G
    Journal World Journal of Gastroenterology
    Pages 1197-1209
    Link Publication

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