Mucosal Lesion Analysis of HD digital Chromocolonoscopy using Wavelets
Mucosal Lesion Analysis of HD digital Chromocolonoscopy using Wavelets
Disciplines
Other Human Medicine, Health Sciences (50%); Computer Sciences (40%); Clinical Medicine (10%)
Keywords
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High Definition Colonoscopy,
Digital Chromoendoscopy,
Computed Virtual Chromoendoscopy,
Pit Pattern/Vascular Pattern/Texture Classificatio,
Decision Support System,
Wavelets
According to the American Cancer Society colon cancer ist the third most common type of cancer in males and fourth in females in western countries. Therefore screening programs have been established worldwide in order to detect lesions with a malignant potential or early cancer. The current goldstandard for the detection of lesions in the colon is flexible video-endoscopy. The colonoscope allows a physician or surgeon to examine the colon and the distal part of the ileum and to take tissue samples. Modern colonoscopes are using high resolution CCD and storage of pictures and video sequences can be done using additional hardware. Therefore, analysis of images or video sequences with the assistance of computers is possible in principle. This allows computer assisted detection and classification of lesions. Recently, high definition (HD and HD+) endoscopy has been introduced into the market and is becoming quickly the de-facto standard in medical centers. Major manufacturers are offering corresponding technology, e.g. Olympus EVIS EXARA II or Pentax HiLINE HD+, and this technology is being adopted quickly in colonoscopy. The combination of digital chromoendoscopy and HD-endoscopy leads to characteristic mucosal surface patterns which can be interpreted by an experienced examiner. However, result accuracy is limited by about 90\% - 95\% and also inter-examiner variability has been reporteted recently and require to improve the results for clinical deployment in e.g. screening programs. Consequently, this project proposal aims at developing techniques for a computer assisted clinical assessment employing and comparing different types of wavelet-based techniques for an automated classification of visual data aquired by a HD colonoscope using digital virtual chromoendoscopy (Pentax i-Scan) corresponding to different types of lesions. Besides establishing a database of HD texture patches with available ground truth with respect to histopathologic ground truth, a collection of preprocessing, wavelet-based feaure extraction and classification algorithms will be developed to result in a prototype decision support system, which will be assessed in a clinical study.
According to the American Cancer Society colon cancer is the third most common type of cancer in males and fourth in females in western countries. Therefore screening programs have been established worldwide in order to detect lesions with a malignant potential or early cancer. The current goldstandard for the detection of lesions in the colon is flexible video-endoscopy. The colonoscope allows a physician or surgeon to examine the colon and the distal part of the ileum and to take tissue samples. Modern colonoscopes are using high resolution CCD and storage of pictures and video sequences can be done using additional hardware. Therefore, analysis of images or video sequences with the assistance of computers is possible in principle. This allows computer assisted detection and classification of lesions.Recently, high definition (HD and HD+) endoscopy has been introduced into the market and is becoming quickly the de-facto standard in medical centers. Major manufacturers are offering corresponding technology, e.g. Olympus EVIS EXARA II or Pentax HiLINE HD+, and this technology is being adopted quickly in colonoscopy. The combination of digital chromoendoscopy and HD-endoscopy leads to characteristic mucosal surface patterns which can be interpreted by an experienced examiner. However, result accuracy is limited by about 90\% - 95\% and also inter-examiner variability has been reported recently and requires to improve the results for clinical deployment in e.g. screening programs.Consequently, this project has developed techniques for a computer assisted clinical assessment of colonic polys employing and comparing different types of wavelet-based and other techniques for an automated classification of visual data acquired by a HD colonoscope using digital virtual chromoendoscopy (Pentax i-Scan) corresponding to different types of lesions. Besides establishing a database of HD texture patches with available histopathologic ground truth, a collection of preprocessing, (wavelet-based) feature extraction and classification algorithms have been developed to result in a prototype polyp dignity assessment decision support system.
- Krankenhaus St. Elisabeth - 15%
- Universität Salzburg - 85%
- Michael Häfner, Krankenhaus St. Elisabeth , associated research partner
Research Output
- 368 Citations
- 20 Publications
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2015
Title Colonic Polyp Classification in High-Definition Video Using Complex Wavelet-Packets DOI 10.1007/978-3-662-46224-9_63 Type Book Chapter Author Häfner M Publisher Springer Nature Pages 365-370 -
2015
Title A scale- and orientation-adaptive extension of Local Binary Patterns for texture classification DOI 10.1016/j.patcog.2015.02.024 Type Journal Article Author Hegenbart S Journal Pattern Recognition Pages 2633-2644 Link Publication -
2012
Title Evaluation of Cross-validation Protocols for the Classification of Endoscopic Images of Colonic Polyps DOI 10.1109/cbms.2012.6266355 Type Conference Proceeding Abstract Author Häfner M Pages 1-6 -
2011
Title Computer-Aided Decision Support Systems for Endoscopy in the Gastrointestinal Tract: A Review DOI 10.1109/rbme.2011.2175445 Type Journal Article Author Liedlgruber M Journal IEEE Reviews in Biomedical Engineering Pages 73-88 -
2014
Title Bridging the Resolution Gap Between Endoscope Types for a Colonic Polyp Classification DOI 10.1109/icpr.2014.472 Type Conference Proceeding Abstract Author Häfner M Pages 2739-2744 -
2014
Title Degradation Adaptive Texture Classification DOI 10.1109/icip.2014.7025558 Type Conference Proceeding Abstract Author Gadermayr M Pages 2759-2763 Link Publication -
2014
Title Shape and Size Adapted Local Fractal Dimension for the Classification of Polyps in HD Colonoscopy DOI 10.1109/icip.2014.7025466 Type Conference Proceeding Abstract Author Uhl A Pages 2299-2303 -
2014
Title A Scale-Adaptive Extension to Methods Based on LBP Using Scale-Normalized Laplacian of Gaussian Extrema in Scale-Space DOI 10.1109/icassp.2014.6854417 Type Conference Proceeding Abstract Author Hegenbart S Pages 4319-4323 -
2014
Title Scale-Adaptive Texture Classification DOI 10.1109/icpr.2014.457 Type Conference Proceeding Abstract Author Gadermayr M Pages 2643-2648 Link Publication -
2014
Title Comparison of Super-Resolution Methods for HD-Video Endoscopy DOI 10.1007/978-3-642-54111-7_19 Type Book Chapter Author Häfner M Publisher Springer Nature Pages 78-83 -
2014
Title Evaluation of Super-Resolution Methods in the Context of Colonic Polyp Classification. Type Conference Proceeding Abstract Author Häfner M -
2014
Title Evaluation Of Super-Resolution Methods In The Context Of Colonic Polyp Classification DOI 10.1109/cbmi.2014.6849830 Type Conference Proceeding Abstract Author Häfner M Pages 1-6 -
2013
Title Super-Resolution Techniques Evaluated in the Context of HD Endoscopic Imaging. Type Journal Article Author Häfner M Journal Department of Computer Sciences, University of Salzburg, Austria, Technical Report 2013-04, 2013 -
2013
Title Scale invariant texture descriptors for classifying celiac disease DOI 10.1016/j.media.2013.02.001 Type Journal Article Author Hegenbart S Journal Medical Image Analysis Pages 458-474 Link Publication -
2012
Title Delaunay triangulation-based pit density estimation for the classification of polyps in high-magnification chromo-colonoscopy DOI 10.1016/j.cmpb.2011.12.012 Type Journal Article Author Häfner M Journal Computer Methods and Programs in Biomedicine Pages 565-581 Link Publication -
2014
Title A systematic evaluation of the scale invariance of texture recognition methods DOI 10.1007/s10044-014-0435-1 Type Journal Article Author Uhl A Journal Pattern Analysis and Applications Pages 945-969 Link Publication -
2014
Title A Novel Shape Feature Descriptor for the Classification of Polyps in HD Colonoscopy DOI 10.1007/978-3-319-05530-5_20 Type Book Chapter Author Häfner M Publisher Springer Nature Pages 205-213 -
2013
Title POCS-based Super-Resolution for HD Endoscopy Video Frames DOI 10.1109/cbms.2013.6627786 Type Conference Proceeding Abstract Author Häfner M Pages 185-190 -
2013
Title Customised Frequency Pre-filtering in a Local Binary Pattern-Based Classification of Gastrointestinal Images DOI 10.1007/978-3-642-36678-9_10 Type Book Chapter Author Hegenbart S Publisher Springer Nature Pages 99-109 -
2019
Title Quest for the best endoscopic imaging modality for computer-assisted colonic polyp staging DOI 10.3748/wjg.v25.i10.1197 Type Journal Article Author Wimmer G Journal World Journal of Gastroenterology Pages 1197-1209 Link Publication