Electron Transfer in Cellulose Degrading Enzymes
Electron Transfer in Cellulose Degrading Enzymes
Bilaterale Ausschreibung: Tschechien
Disciplines
Biology (60%); Chemistry (30%); Industrial Biotechnology (10%)
Keywords
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Cellobiose Dehydrogenase,
Cellulose Depolymerization,
Lytic Polysaccharide Monooxygenase,
Mass Spectrometry,
Hydrogen/Deuterium Exchange,
Chemical Cross-Linking
The interaction of the two enzymes lytic polysaccharide monooxygenase (LPMO) and cellobiose dehydrogenase (CDH) was shown to boost the effectiveness of cellulose degradation. While CDH has been proposed to act as a reductant for LPMO, its specific action is unclear. To investigate this extracellular redox process and its relevance in comparison with other potential reductants such as gallic acid, we will employ CDH and LPMO enzymes from cellulose degrading fungi. The interaction of LPMO and CDH in homogeneous solution and more important the physiologically relevant state of cellulose bound enzymes will be characterized. Stopped-flow spectrophotometry and isothermal calorimetry will be used to elucidate electron transfer rates and protein interactions. To study the kinetics of bound enzymes on cellulosic substrates we will employ steady-state kinetic analysis based on HPLC, mass spectrometry analysis of reaction products. Protein cross-linking followed by structural mass-spectrometry and proton exchange experiments will be used to elucidate protein-protein and protein-cellulose interactions. The project will test the hypothesis that CDHs natural role is that of an LPMO reductase. The CDH/LPMO interaction will be studied to specifically answer three questions: 1) Is CDH a fast electron donor for LPMO and how does it compete with small molecular mass reductants such as gallic acid? 2) Do CDH and LPMO interact by a specific protein-protein interface or is the interprotein electron transfer based on random contacts? 3) Differs the interaction of CDHs and LPMOs with a carbohydrate binding module from the ones which do not? The results of this study will expand the understanding of extracellular, biocatalytic redox processes as the basis of oxidative celllulose degradation. Applied research will benefit from the approaches to modulate and engineer the interaction of CDH and LPMO, which can lead to an increased efficiency of second generation biofuel production or depolymerization processes in green biorefineries.
The interaction of the two enzymes lytic polysaccharide monooxygenase (LPMO) and cellobiose dehydrogenase (CDH) was shown to boost the effectiveness of cellulose degradation. While CDH has been proposed to act as a reductant for LPMO, its specific action has been unclear and was investigated in this project. It was found that CDH does not only provide electrons to activate LPMO by reducing its copper center, but also supplies hydrogen peroxide as a cosubstrate. The interaction of both enzymes has been modeled and verified by mutagenesis experiments. This extracellular redox process has been compared with other potential reductants such as gallic acid for a number of CDH and LPMO enzymes from cellulose degrading fungi. The interaction of LPMO and CDH in homogeneous solution and more important the physiologically relevant state of cellulose bound enzymes was characterized. Stopped-flow spectrophotometry and isothermal calorimetry were used to elucidate electron transfer rates and protein interactions. To study the kinetics of bound enzymes on cellulosic substrates we employed steady-state kinetic analysis based on HPLC, mass spectrometry analysis of reaction products. Protein cross-linking followed by structural mass-spectrometry and proton exchange experiments will be used to elucidate protein-protein and protein-cellulose interactions. The project found that CDH's natural role is indeed that of an "LPMO reductase". The CDH/LPMO interaction occurs at the interface to the protein cofactors at a specific protein-protein interface. The interaction of CDHs and LPMOs are modulated by the presence of a carbohydrate binding (CBM). The results of this study expand the understanding of extracellular, biocatalytic redox processes as the basis of oxidative celllulose degradation. Applied research benefits from the new approaches to modulate and engineer the interaction of CDH and LPMO, which leads to an increased efficiency of second generation biofuel production and depolymerization processes in green biorefineries.
- Petr Halada, Academy of Sciences of the Czech Republic - Czechia
- Petr Man, Academy of Sciences of the Czech Republic - Czechia
- Sarah Cianferani, Université de Strasbourg - France
- Christina Divne, KTH Royal Institute of Technology - Sweden
- Carol V. Robinson, The University of Oxford
Research Output
- 491 Citations
- 26 Publications
- 1 Methods & Materials
- 4 Scientific Awards
- 3 Fundings
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2020
Title Additional file 1 of The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay DOI 10.6084/m9.figshare.11945853 Type Other Author Frantisek Filandr Link Publication -
2020
Title Additional file 1 of The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay DOI 10.6084/m9.figshare.11945853.v1 Type Other Author Frantisek Filandr Link Publication -
2022
Title Inhibition of the Peroxygenase Lytic Polysaccharide Monooxygenase by Carboxylic Acids and Amino Acids DOI 10.3390/antiox11061096 Type Journal Article Author Breslmayr E Journal Antioxidants Pages 1096 Link Publication -
2019
Title Polysaccharide oxidation by lytic polysaccharide monooxygenase is enhanced by engineered cellobiose dehydrogenase DOI 10.1111/febs.15067 Type Journal Article Author Kracher D Journal The FEBS Journal Pages 897-908 Link Publication -
2019
Title MOESM1 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330105.v1 Type Other Author Breslmayr E Link Publication -
2019
Title MOESM1 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330105 Type Other Author Breslmayr E Link Publication -
2019
Title MOESM2 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330108 Type Other Author Breslmayr E Link Publication -
2019
Title MOESM2 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330108.v1 Type Other Author Breslmayr E Link Publication -
2019
Title MOESM3 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330111 Type Other Author Breslmayr E Link Publication -
2019
Title MOESM3 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.11330111.v1 Type Other Author Breslmayr E Link Publication -
2019
Title Improved spectrophotometric assay for lytic polysaccharide monooxygenase DOI 10.1186/s13068-019-1624-3 Type Journal Article Author Breslmayr E Journal Biotechnology for Biofuels Pages 283 Link Publication -
2017
Title Wheat bran biodegradation by edible Pleurotus fungi – A sustainable perspective for food and feed DOI 10.1016/j.lwt.2017.07.051 Type Journal Article Author Wanzenböck E Journal LWT - Food Science and Technology Pages 123-131 -
2017
Title Active-site copper reduction promotes substrate binding of fungal lytic polysaccharide monooxygenase and reduces stability DOI 10.1074/jbc.ra117.000109 Type Journal Article Author Kracher D Journal Journal of Biological Chemistry Pages 1676-1687 Link Publication -
2018
Title MOESM1 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024731 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM1 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024731.v1 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM2 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024752 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM2 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024752.v1 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM3 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024770 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM3 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024770.v1 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM4 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024791 Type Other Author Breslmayr E Link Publication -
2018
Title MOESM4 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.6084/m9.figshare.6024791.v1 Type Other Author Breslmayr E Link Publication -
2020
Title Chimeric Cellobiose Dehydrogenases Reveal the Function of Cytochrome Domain Mobility for the Electron Transfer to Lytic Polysaccharide Monooxygenase DOI 10.1021/acscatal.0c05294 Type Journal Article Author Felice A Journal ACS Catalysis Pages 517-532 Link Publication -
2020
Title The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay DOI 10.1186/s13068-020-01673-4 Type Journal Article Author Filandr F Journal Biotechnology for Biofuels Pages 37 Link Publication -
2020
Title Structural Dynamics of Lytic Polysaccharide Monooxygenase during Catalysis DOI 10.3390/biom10020242 Type Journal Article Author Filandr F Journal Biomolecules Pages 242 Link Publication -
2018
Title A fast and sensitive activity assay for lytic polysaccharide monooxygenase DOI 10.1186/s13068-018-1063-6 Type Journal Article Author Breslmayr E Journal Biotechnology for Biofuels Pages 79 Link Publication -
2017
Title Engineering of Cellobiose Dehydrogenases for Improved Glucose Sensitivity and Reduced Maltose Affinity DOI 10.1002/celc.201600781 Type Journal Article Author Ortiz R Journal ChemElectroChem Pages 846-855
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2018
Title Enymatic activity assay for LPMO Type Technology assay or reagent Public Access
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2019
Title BioTrans 2019, July 7-11, 2019, Groningen, The Netherlands Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2018
Title 43rd FEBS Conference, Jul. 7-12, 2018, Prague, Czech Republic Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2018
Title International Symposium on Artificial Cell Reactor Science and Technology, Apr. 5-6, 2018, Tokyo, Japan Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2018
Title 9th International Congress of Food Technologists, Biotechnologists and Nutritionists, Oct. 3-5, 2018, Zagreb, Croatia Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International
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2018
Title Electron flow during oxidative cellulose degradation Type Other Start of Funding 2018 -
2018
Title Routing the flow of electrons... Type Other Start of Funding 2018 -
2017
Title (OXIDISE) - Interaction and Kinetics of Oxidative Biomass Degrading Enzymes Resolved by High-Resolution Techniques Type Research grant (including intramural programme) Start of Funding 2017