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Electron Transfer in Cellulose Degrading Enzymes

Electron Transfer in Cellulose Degrading Enzymes

Roland Ludwig (ORCID: 0000-0002-5058-5874)
  • Grant DOI 10.55776/I2385
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start March 1, 2016
  • End April 30, 2019
  • Funding amount € 228,406
  • Project website

Bilaterale Ausschreibung: Tschechien

Disciplines

Biology (60%); Chemistry (30%); Industrial Biotechnology (10%)

Keywords

    Cellobiose Dehydrogenase, Cellulose Depolymerization, Lytic Polysaccharide Monooxygenase, Mass Spectrometry, Hydrogen/Deuterium Exchange, Chemical Cross-Linking

Abstract Final report

The interaction of the two enzymes lytic polysaccharide monooxygenase (LPMO) and cellobiose dehydrogenase (CDH) was shown to boost the effectiveness of cellulose degradation. While CDH has been proposed to act as a reductant for LPMO, its specific action is unclear. To investigate this extracellular redox process and its relevance in comparison with other potential reductants such as gallic acid, we will employ CDH and LPMO enzymes from cellulose degrading fungi. The interaction of LPMO and CDH in homogeneous solution and more important the physiologically relevant state of cellulose bound enzymes will be characterized. Stopped-flow spectrophotometry and isothermal calorimetry will be used to elucidate electron transfer rates and protein interactions. To study the kinetics of bound enzymes on cellulosic substrates we will employ steady-state kinetic analysis based on HPLC, mass spectrometry analysis of reaction products. Protein cross-linking followed by structural mass-spectrometry and proton exchange experiments will be used to elucidate protein-protein and protein-cellulose interactions. The project will test the hypothesis that CDHs natural role is that of an LPMO reductase. The CDH/LPMO interaction will be studied to specifically answer three questions: 1) Is CDH a fast electron donor for LPMO and how does it compete with small molecular mass reductants such as gallic acid? 2) Do CDH and LPMO interact by a specific protein-protein interface or is the interprotein electron transfer based on random contacts? 3) Differs the interaction of CDHs and LPMOs with a carbohydrate binding module from the ones which do not? The results of this study will expand the understanding of extracellular, biocatalytic redox processes as the basis of oxidative celllulose degradation. Applied research will benefit from the approaches to modulate and engineer the interaction of CDH and LPMO, which can lead to an increased efficiency of second generation biofuel production or depolymerization processes in green biorefineries.

The interaction of the two enzymes lytic polysaccharide monooxygenase (LPMO) and cellobiose dehydrogenase (CDH) was shown to boost the effectiveness of cellulose degradation. While CDH has been proposed to act as a reductant for LPMO, its specific action has been unclear and was investigated in this project. It was found that CDH does not only provide electrons to activate LPMO by reducing its copper center, but also supplies hydrogen peroxide as a cosubstrate. The interaction of both enzymes has been modeled and verified by mutagenesis experiments. This extracellular redox process has been compared with other potential reductants such as gallic acid for a number of CDH and LPMO enzymes from cellulose degrading fungi. The interaction of LPMO and CDH in homogeneous solution and more important the physiologically relevant state of cellulose bound enzymes was characterized. Stopped-flow spectrophotometry and isothermal calorimetry were used to elucidate electron transfer rates and protein interactions. To study the kinetics of bound enzymes on cellulosic substrates we employed steady-state kinetic analysis based on HPLC, mass spectrometry analysis of reaction products. Protein cross-linking followed by structural mass-spectrometry and proton exchange experiments will be used to elucidate protein-protein and protein-cellulose interactions. The project found that CDH's natural role is indeed that of an "LPMO reductase". The CDH/LPMO interaction occurs at the interface to the protein cofactors at a specific protein-protein interface. The interaction of CDHs and LPMOs are modulated by the presence of a carbohydrate binding (CBM). The results of this study expand the understanding of extracellular, biocatalytic redox processes as the basis of oxidative celllulose degradation. Applied research benefits from the new approaches to modulate and engineer the interaction of CDH and LPMO, which leads to an increased efficiency of second generation biofuel production and depolymerization processes in green biorefineries.

Research institution(s)
  • Universität für Bodenkultur Wien - 100%
International project participants
  • Petr Halada, Academy of Sciences of the Czech Republic - Czechia
  • Petr Man, Academy of Sciences of the Czech Republic - Czechia
  • Sarah Cianferani, Université de Strasbourg - France
  • Christina Divne, KTH Royal Institute of Technology - Sweden
  • Carol V. Robinson, The University of Oxford

Research Output

  • 491 Citations
  • 26 Publications
  • 1 Methods & Materials
  • 4 Scientific Awards
  • 3 Fundings
Publications
  • 2020
    Title Additional file 1 of The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay
    DOI 10.6084/m9.figshare.11945853
    Type Other
    Author Frantisek Filandr
    Link Publication
  • 2020
    Title Additional file 1 of The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay
    DOI 10.6084/m9.figshare.11945853.v1
    Type Other
    Author Frantisek Filandr
    Link Publication
  • 2022
    Title Inhibition of the Peroxygenase Lytic Polysaccharide Monooxygenase by Carboxylic Acids and Amino Acids
    DOI 10.3390/antiox11061096
    Type Journal Article
    Author Breslmayr E
    Journal Antioxidants
    Pages 1096
    Link Publication
  • 2019
    Title Polysaccharide oxidation by lytic polysaccharide monooxygenase is enhanced by engineered cellobiose dehydrogenase
    DOI 10.1111/febs.15067
    Type Journal Article
    Author Kracher D
    Journal The FEBS Journal
    Pages 897-908
    Link Publication
  • 2019
    Title MOESM1 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330105.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title MOESM1 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330105
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title MOESM2 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330108
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title MOESM2 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330108.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title MOESM3 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330111
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title MOESM3 of Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.11330111.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2019
    Title Improved spectrophotometric assay for lytic polysaccharide monooxygenase
    DOI 10.1186/s13068-019-1624-3
    Type Journal Article
    Author Breslmayr E
    Journal Biotechnology for Biofuels
    Pages 283
    Link Publication
  • 2017
    Title Wheat bran biodegradation by edible Pleurotus fungi – A sustainable perspective for food and feed
    DOI 10.1016/j.lwt.2017.07.051
    Type Journal Article
    Author Wanzenböck E
    Journal LWT - Food Science and Technology
    Pages 123-131
  • 2017
    Title Active-site copper reduction promotes substrate binding of fungal lytic polysaccharide monooxygenase and reduces stability
    DOI 10.1074/jbc.ra117.000109
    Type Journal Article
    Author Kracher D
    Journal Journal of Biological Chemistry
    Pages 1676-1687
    Link Publication
  • 2018
    Title MOESM1 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024731
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM1 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024731.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM2 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024752
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM2 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024752.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM3 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024770
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM3 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024770.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM4 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024791
    Type Other
    Author Breslmayr E
    Link Publication
  • 2018
    Title MOESM4 of A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.6084/m9.figshare.6024791.v1
    Type Other
    Author Breslmayr E
    Link Publication
  • 2020
    Title Chimeric Cellobiose Dehydrogenases Reveal the Function of Cytochrome Domain Mobility for the Electron Transfer to Lytic Polysaccharide Monooxygenase
    DOI 10.1021/acscatal.0c05294
    Type Journal Article
    Author Felice A
    Journal ACS Catalysis
    Pages 517-532
    Link Publication
  • 2020
    Title The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay
    DOI 10.1186/s13068-020-01673-4
    Type Journal Article
    Author Filandr F
    Journal Biotechnology for Biofuels
    Pages 37
    Link Publication
  • 2020
    Title Structural Dynamics of Lytic Polysaccharide Monooxygenase during Catalysis
    DOI 10.3390/biom10020242
    Type Journal Article
    Author Filandr F
    Journal Biomolecules
    Pages 242
    Link Publication
  • 2018
    Title A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.1186/s13068-018-1063-6
    Type Journal Article
    Author Breslmayr E
    Journal Biotechnology for Biofuels
    Pages 79
    Link Publication
  • 2017
    Title Engineering of Cellobiose Dehydrogenases for Improved Glucose Sensitivity and Reduced Maltose Affinity
    DOI 10.1002/celc.201600781
    Type Journal Article
    Author Ortiz R
    Journal ChemElectroChem
    Pages 846-855
Methods & Materials
  • 2018
    Title Enymatic activity assay for LPMO
    Type Technology assay or reagent
    Public Access
Scientific Awards
  • 2019
    Title BioTrans 2019, July 7-11, 2019, Groningen, The Netherlands
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title 43rd FEBS Conference, Jul. 7-12, 2018, Prague, Czech Republic
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title International Symposium on Artificial Cell Reactor Science and Technology, Apr. 5-6, 2018, Tokyo, Japan
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title 9th International Congress of Food Technologists, Biotechnologists and Nutritionists, Oct. 3-5, 2018, Zagreb, Croatia
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
Fundings
  • 2018
    Title Electron flow during oxidative cellulose degradation
    Type Other
    Start of Funding 2018
  • 2018
    Title Routing the flow of electrons...
    Type Other
    Start of Funding 2018
  • 2017
    Title (OXIDISE) - Interaction and Kinetics of Oxidative Biomass Degrading Enzymes Resolved by High-Resolution Techniques
    Type Research grant (including intramural programme)
    Start of Funding 2017

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