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A reprogramming-based strategy for drug repositioning

A reprogramming-based strategy for drug repositioning

Frank Oliver Stefan Edenhofer (ORCID: 0000-0002-6489-714X)
  • Grant DOI 10.55776/I5184
  • Funding program International - Multilateral Initiatives
  • Status ended
  • Start November 1, 2021
  • End October 31, 2024
  • Funding amount € 295,700

Disciplines

Biology (50%); Medical-Theoretical Sciences, Pharmacy (50%)

Keywords

    Mitochondrial disease, Neurobiology, Cellular reprogramming, Compound screening, Drug repositioning, Stem cell biology

Abstract Final report

The research project aims at identifying drugs to treat a rare neurological disorder, designated Leigh syndrome (MILS in brief). This is an untreatable brain disease affecting 1/100,000 births and is caused by defects of the cellulars mitochondrial DNA. Mitochondria are essential organelles that provide energy to the cell and maintain their own genome. MILS is typically caused by mitochondrial DNA mutations of a gene called MT-ATP6, that encodes for a protein subunit that is necessary to generate ATP. ATP provides cellular energy to drive many biological processes, such as growth and proliferation, muscle contraction, nerve stimulus transmission etc. Drug discovery for MILS is particularly challenging. Given the limited access to patients neural tissue and the impossibility to engineer mtDNA, we thus far lack the cellular and animal models needed for the evaluation of treatments. Recent progress in stem cell biology allow cellular reprogramming of somatic cells into virtually any other cell type. Within a European-wide consortium, we will use state-of-the-art cellular reprogramming technologies to convert skin cells from MILS patients into neural cells, allowing the identification of molecular intervention strategies. We previously screened a small library of 150 compounds, that have been already approved by the Food and Drug Administration (FDA) and identified small molecules with phosphodiesterase 5 inhibitor (PDE5i) activity as a potential drug to treat MILS. Now, we extend this approach using the largest available library of repurposing compounds (approx. 8,000). We will validate top hit compounds by combining targeted mitochondrial profiling. Moreover, we will perform genome-wide analysis at all levels of cellulars functionalioty (multi-omics analysis) using reprogramming- derived neural models (neural progenitors, neurons, and brain organoids) carrying different MT-ATP6 mutations. By that our consortium will identify drugs suited for repositioning as interventions in MILS, laying the foundation for a multi-national clinical trial and a concrete path towards a cure for MILS. Moreover, this project will be instrumental to establish a paradigmatic working pipeline for reprogramming-driven drug discovery of other rare (neurological) disorders. Besides the coordinator Alessandro Prigione (University of Duesseldorf, Germany) and Frank Edenhofer (University of Innsbruck, Austria), six other European researchers from Netherlands, Poland, Italy, Finland and Luxemburg are taking part in this research project.

Our research group is continuously engaged in a variety of outreach activities aimed at communicating scientific findings to the general public. We regularly participate in public science events such as open-door days and research nights, accept offers for lectures at public institutions, and disseminate our results not only through peer-reviewed scientific journals but also via press releases, media publications, and interviews.

Research institution(s)
  • Universität Innsbruck - 100%
International project participants
  • Anu Suomalainen, Helsinki University - Finland
  • Ole Pless, Fraunhofer IME - Germany
  • Alessandro Prigione, Heinrich Heine Universität Düsseldorf - Germany
  • Emanuela Bottani, University of Verona - Italy
  • Antonio Del Sol, Université du Luxembourg - Luxembourg
  • Werner J.H. Koopman, Radboud University Nijmegen Medical Centre - Netherlands
  • Pawel Lisowski, Polish Academy of Science - Poland

Research Output

  • 8 Publications
  • 2 Policies
  • 1 Methods & Materials
  • 4 Disseminations
  • 1 Scientific Awards
  • 1 Fundings
Publications
  • 2024
    Title The promise of genetic screens in human invitro brain models.
    DOI 10.1515/hsz-2023-0174
    Type Journal Article
    Author Beirute-Herrera J
    Journal Biological chemistry
    Pages 13-24
  • 2022
    Title TIME-RESOLVED METABOLIC AND TRANSCRIPTOMIC CHANGES IN EARLY HUMAN CORTICO-GENESIS AND SCHIZOPHRENIA
    Type PhD Thesis
    Author Gabriele Sauerwein
  • 2024
    Title Increased cholesterol synthesis drives neurotoxicity in patient stem cell-derived model of multiple sclerosis.
    DOI 10.1016/j.stem.2024.09.014
    Type Journal Article
    Author Ionescu Rb
    Journal Cell stem cell
  • 2023
    Title PATIENT-DERIVED STEM CELLS TO STUDY AN AUTISM SPECTRUM DISORDER ASSOCIATED VOLTAGE-GATED CALCIUM CHANNEL GAIN-OF-FUNCTION MUTATION
    Type PhD Thesis
    Author Marcel Tisch
  • 2024
    Title Induced pluripotent stem cell and induced neural stem cell models for the study of neurodevelopmental psychiatric disorders
    Type PhD Thesis
    Author Angeliki Spathopoulou
  • 2022
    Title Cell reprogramming to study neurological disorders in cell type and patient-specific models
    Type Postdoctoral Thesis
    Author Jerome Mertens
  • 2025
    Title Studying human brain ageing in vitro: A 3D model to investigate novel neuronal age-mediating factors and neurodegeneration
    Type PhD Thesis
    Author Elisa Gabassi
  • 2026
    Title Protocol for stable isotopic tracing to assess cellular lipogenic activity in induced neural stem cells
    DOI 10.1016/j.xpro.2025.104309
    Type Journal Article
    Author Ionescu R
    Journal STAR Protocols
Policies
  • 2025
    Title Global Discussion on International Society for Stem Cell Resarch (ISSCR) Initiatives
    Type Influenced training of practitioners or researchers
  • 2024
    Title Consultancy / contact with patient organisation: NCL-Stiftung, für eine Zukunft ohne Kinderdemenz
    Type Contribution to a national consultation/review
Methods & Materials
  • 0
    Title High resolution respirometry analyses of cortical organoids
    Type Physiological assessment or outcome measure
    Public Access
Disseminations
  • 2025 Link
    Title VHS Lecture Planetarium Wien
    Type A magazine, newsletter or online publication
    Link Link
  • 2025 Link
    Title scilog article - Ein molekularer Jungbrunnen fürs Gehirn
    Type A magazine, newsletter or online publication
    Link Link
  • 2024 Link
    Title Lange Nacht der Forschung: Faszination Stammzelle - Von personalisierter Medizin zu menschlichen Organen
    Type Participation in an open day or visit at my research institution
    Link Link
  • 2025 Link
    Title Ein molekularer Jungbrunnen fürs Gehirn
    Type A press release, press conference or response to a media enquiry/interview
    Link Link
Scientific Awards
  • 2025
    Title Poster Award at ISSCR's Athens International Symposium on Neural Stem Cells (2025)
    Type Research prize
    Level of Recognition Continental/International
Fundings
  • 2025
    Title iPSC-derived organoids to study CLN3 disease and discover new drugs
    Type Research grant (including intramural programme)
    Start of Funding 2025
    Funder NCL Foundation

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