Pollen, genes and the evolution of the Fagales
Pollen, genes and the evolution of the Fagales
Disciplines
Biology (60%); Geosciences (40%)
Keywords
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Evolution,
Cenozoic,
Fagales,
Interdisciplinary Research,
Phylogenomics,
Palynological Record
With the increasing specialisation in science it becomes more difficult to establish general hypotheses about evolution. The aim of this project is bridging the gap between palaeobotany and the fields of biogeography, molecular dating, and phylogenetics by integrating molecular phylogenetic and biogeographic hypotheses with the fossil pollen record of the Fagales. The Fagales have an extraordinarily rich fossil record of vegetative and reproductive organs. At the same time, the number of genera and species in the modern Fagales is workable and allows analysing molecular differentiation at low and high taxonomic levels. The Fagales originated in the Late Cretaceous and a number of early radiating, extinct lineages have unknown affinities to modern groups. Dispersed pollen, but also macrofossils, allow tracing modern genera back until the Palaeogene, providing an ideal opportunity to coalesce palaeo- and neobotanical methods and data. Despite their abundance, fossils of most genera have not been put in an evolutionary context, particularly the well-known and highly conserved pollen types have been largely ignored in neobotanical studies. During a period of 20 Ma (late Eocenemiddle Miocene) extinct and extant genera of Fagales coexisted, which offers an excellent opportunity to investigate evolutionary turn-over. Only some of their modern members are genetically well-studied, others are in urgent need of detailed investigations. The project aims at clarifying some of the enigmas of the evolution of the Fagales such as the nearly simultaneous emergence of modern genera, its unfolding in space and time, and to fill some of the white spots in morphological and molecular data sets. The ultimate goal is to integrate the rich fossil record of the Fagales, in particular recent and upcoming palynological evidence, with phylogenomic data of the extant members for the mutual benefit of palaeobotanical and neobotanical research.
With this Lise-Meitner Mobility grant we bridged the widening inter-disciplinary gap: a trained geologist, who became a geneticist and data analyst, collaborated closely with experienced palynologists on dispersed pollen floras from Earth's past. Science increasingly fragments into subdisciplines. The amount of data accessible for reconstruction of modern and past relationships between organisms, or the ecosystems they thrive in, increases every minute. Whereas the forefathers of evolutionary sciences, Charles Darwin, Alfred Wallace, and Ernst Haeckel, deducted everything based on their (holistic) observations of nature as it is (was), today, each field of science relies on highly specialised researchers and their unique methodological approaches. The huge amount of data is processed by (bio)informaticians, who can handle specialised and increasingly sophisticated computer programmes. Molecular systematicists use gene data to determine relationships between modern organisms. Biogeographers reconstruct migration pathways using the modern, and to a much lesser degree, past distribution of organisms. Statisticians and modellers apply simulations and mathematical models. But a decreasing amount of researchers work at the coal-face of organismal sciences: traditional botanists and zoologists spending their time in the field and existing collections to provide (identify the material, all other disciplines rely on. An even smaller group with unique knowledge are the palaeontologists, researchers familiar with the fossil record (the life that was), and palynologists, researchers studying tiny microscopic objects such as pollen and spores. Although often claimed, there is too little exchange between the different disciplines. Scientific papers typically treat a single topic. Anything else, such as cross-disciplinary research were different fields of science fertilise each other, is rare and difficult to publish. Partly because the so-called "peers", usually anonymous said-experts who judge the quality of a scientific paper, are, like far the most scientists, specialists with limited insight in other disciplines. We tried to bridge this gap. The results were a series of scientific publications including some truly cross-disciplinary ones that highlight the great value and potential of palynological data, fossil pollen, for other biological disciplines such as molecular dating and biogeography. We showed how the oldest record of beech trees and their relatives, such as oak and chestnut, agrees with evidence from molecular dating. We highlighted the importance of Greenland as ancient home of today equatorial and southern hemispheric plants and demonstrated the utility of pollen for better understanding of the evolutionary history of the Loranthaceae, a tropical- subtropical group of mistle-toes. The hope is that our studies will motivate other researchers to follow the path we laid out and take up similar research tasks, and try to bridge the widening gaps between different fields of science. The main message of our project is that it may be difficult, but it can be done, and it is worthwhile.
- Universität Wien - 100%
- Susanne Renner, University of Munich - Germany
- Marco Simeone, Universita degli Studi della Tuscia - Italy
- Alastair Potts, Nelson Mandela Metropolitan University - South Africa
- Thomas Denk, Swedish Museum of Natural History - Sweden
- Andrew Hipp, The Morton Arboretum - USA
Research Output
- 736 Citations
- 29 Publications
- 4 Datasets & models
- 1 Software
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2016
Title Fables and foibles: A critical analysis of the Palaeoflora database and the Coexistence Approach for palaeoclimate reconstruction DOI 10.1016/j.revpalbo.2016.07.001 Type Journal Article Author Grimm G Journal Review of Palaeobotany and Palynology Pages 216-235 Link Publication -
2016
Title Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth–death clock model DOI 10.1098/rstb.2015.0135 Type Journal Article Author Renner S Journal Philosophical Transactions of the Royal Society B: Biological Sciences Pages 20150135 Link Publication -
2016
Title A revised stratigraphy for the Palaeocene Agatdalen flora (Nuussuaq Peninsula, western Greenland): correlating fossiliferous outcrops, macrofossils, and palynological samples from phosphoritic nodules DOI 10.1515/acpa-2016-0009 Type Journal Article Author GrÃmsson F Journal Acta Palaeobotanica Pages 307-327 Link Publication -
2016
Title Cretaceous and Paleogene Fagaceae from North America and Greenland: evidence for a Late Cretaceous split between Fagus and the remaining Fagaceae DOI 10.1515/acpa-2016-0016 Type Journal Article Author GrÃmsson F Journal Acta Palaeobotanica Pages 247-305 Link Publication -
2016
Title Fallacies and fantasies: the theoretical underpinnings of the Coexistence Approach for palaeoclimate reconstruction DOI 10.5194/cp-12-611-2016 Type Journal Article Author Grimm G Journal Climate of the Past Pages 611-622 Link Publication -
2018
Title Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation DOI 10.7287/peerj.preprints.26995 Type Preprint Author Cardoni S -
2018
Title Plant fossils reveal major biomes occupied by the late Miocene Old-World Pikermian fauna DOI 10.1038/s41559-018-0695-z Type Journal Article Author Denk T Journal Nature Ecology & Evolution Pages 1864-1870 -
2018
Title Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation DOI 10.7717/peerj.5793 Type Journal Article Author Simeone M Journal PeerJ Link Publication -
2017
Title Evolution of pollen morphology in Loranthaceae DOI 10.1080/00173134.2016.1261939 Type Journal Article Author GrÃmsson F Journal Grana Pages 16-116 Link Publication -
2017
Title Taxonomy and palaeoecology of two widespread western Eurasian Neogene sclerophyllous oak species: Quercus drymeja Unger and Q. mediterranea Unger DOI 10.1016/j.revpalbo.2017.01.005 Type Journal Article Author Denk T Journal Review of Palaeobotany and Palynology Pages 98-128 Link Publication -
2017
Title Intertwining phylogenetic trees and networks DOI 10.1111/2041-210x.12760 Type Journal Article Author Schliep K Journal Methods in Ecology and Evolution Pages 1212-1220 Link Publication -
2017
Title Additional file 2: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d2.v1 Type Other Author Banag C Link Publication -
2017
Title Additional file 2: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d2 Type Other Author Banag C Link Publication -
2017
Title Additional file 4: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d4 Type Other Author Banag C Link Publication -
2017
Title Additional file 4: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d4.v1 Type Other Author Banag C Link Publication -
2017
Title Additional file 5: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d5 Type Other Author Banag C Link Publication -
2017
Title Additional file 5: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d5.v1 Type Other Author Banag C Link Publication -
2017
Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.60692/80qtb-m5q38 Type Other Author Arnaud Mouly Link Publication -
2017
Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.60692/4tehp-fjf45 Type Other Author Arnaud Mouly Link Publication -
2017
Title Additional file 1: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d1 Type Other Author Banag C Link Publication -
2017
Title Additional file 1: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d1.v1 Type Other Author Banag C Link Publication -
2017
Title A Winteraceae pollen tetrad from the early Paleocene of western Greenland, and the fossil record of Winteraceae in Laurasia and Gondwana DOI 10.1111/jbi.13154 Type Journal Article Author GrÃmsson F Journal Journal of Biogeography Pages 567-581 -
2016
Title Intertwining phylogenetic trees and networks DOI 10.7287/peerj.preprints.2054v1 Type Preprint Author Schliep K Link Publication -
2016
Title Intertwining phylogenetic trees and networks DOI 10.7287/peerj.preprints.2054 Type Preprint Author Schliep K Link Publication -
2017
Title Eocene Loranthaceae pollen pushes back divergence ages for major splits in the family DOI 10.7717/peerj.3373 Type Journal Article Author GrÃmsson F Journal PeerJ Link Publication -
2017
Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.1186/s12862-017-0974-3 Type Journal Article Author Banag C Journal BMC Evolutionary Biology Pages 131 Link Publication -
2017
Title Tiny pollen grains: first evidence of Saururaceae from the Late Cretaceous of western North America DOI 10.7717/peerj.3434 Type Journal Article Author GrÃmsson F Journal PeerJ Link Publication -
2017
Title The fossil Osmundales (Royal Ferns)—a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes DOI 10.7717/peerj.3433 Type Journal Article Author Bomfleur B Journal PeerJ Link Publication -
2015
Title Combined LM and SEM study of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin, Austria: part IV. Magnoliophyta 2 – Fagales to Rosales DOI 10.1080/00173134.2015.1096566 Type Journal Article Author GrÃmsson F Journal Grana Pages 101-163 Link Publication
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2019
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Title Evolution of pollen morphology in Loranthaceae DOI 10.6084/m9.figshare.4737352 Type Database/Collection of data Public Access Link Link -
2018
Link
Title Data from: The fossil Osmundales (Royal Ferns)-a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes DOI 10.5061/dryad.270gs Type Database/Collection of data Public Access Link Link -
2017
Link
Title Additional file 3: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d3 Type Database/Collection of data Public Access Link Link -
2017
Link
Title Additional file 3: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle? DOI 10.6084/m9.figshare.c.3798205_d3.v1 Type Database/Collection of data Public Access Link Link