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Pollen, genes and the evolution of the Fagales

Pollen, genes and the evolution of the Fagales

Guido Grimm (ORCID: )
  • Grant DOI 10.55776/M1751
  • Funding program Lise Meitner
  • Status ended
  • Start January 19, 2015
  • End January 18, 2017
  • Funding amount € 157,380
  • Project website

Disciplines

Biology (60%); Geosciences (40%)

Keywords

    Evolution, Cenozoic, Fagales, Interdisciplinary Research, Phylogenomics, Palynological Record

Abstract Final report

With the increasing specialisation in science it becomes more difficult to establish general hypotheses about evolution. The aim of this project is bridging the gap between palaeobotany and the fields of biogeography, molecular dating, and phylogenetics by integrating molecular phylogenetic and biogeographic hypotheses with the fossil pollen record of the Fagales. The Fagales have an extraordinarily rich fossil record of vegetative and reproductive organs. At the same time, the number of genera and species in the modern Fagales is workable and allows analysing molecular differentiation at low and high taxonomic levels. The Fagales originated in the Late Cretaceous and a number of early radiating, extinct lineages have unknown affinities to modern groups. Dispersed pollen, but also macrofossils, allow tracing modern genera back until the Palaeogene, providing an ideal opportunity to coalesce palaeo- and neobotanical methods and data. Despite their abundance, fossils of most genera have not been put in an evolutionary context, particularly the well-known and highly conserved pollen types have been largely ignored in neobotanical studies. During a period of 20 Ma (late Eocenemiddle Miocene) extinct and extant genera of Fagales coexisted, which offers an excellent opportunity to investigate evolutionary turn-over. Only some of their modern members are genetically well-studied, others are in urgent need of detailed investigations. The project aims at clarifying some of the enigmas of the evolution of the Fagales such as the nearly simultaneous emergence of modern genera, its unfolding in space and time, and to fill some of the white spots in morphological and molecular data sets. The ultimate goal is to integrate the rich fossil record of the Fagales, in particular recent and upcoming palynological evidence, with phylogenomic data of the extant members for the mutual benefit of palaeobotanical and neobotanical research.

With this Lise-Meitner Mobility grant we bridged the widening inter-disciplinary gap: a trained geologist, who became a geneticist and data analyst, collaborated closely with experienced palynologists on dispersed pollen floras from Earth's past. Science increasingly fragments into subdisciplines. The amount of data accessible for reconstruction of modern and past relationships between organisms, or the ecosystems they thrive in, increases every minute. Whereas the forefathers of evolutionary sciences, Charles Darwin, Alfred Wallace, and Ernst Haeckel, deducted everything based on their (holistic) observations of nature as it is (was), today, each field of science relies on highly specialised researchers and their unique methodological approaches. The huge amount of data is processed by (bio)informaticians, who can handle specialised and increasingly sophisticated computer programmes. Molecular systematicists use gene data to determine relationships between modern organisms. Biogeographers reconstruct migration pathways using the modern, and to a much lesser degree, past distribution of organisms. Statisticians and modellers apply simulations and mathematical models. But a decreasing amount of researchers work at the coal-face of organismal sciences: traditional botanists and zoologists spending their time in the field and existing collections to provide (identify the material, all other disciplines rely on. An even smaller group with unique knowledge are the palaeontologists, researchers familiar with the fossil record (the life that was), and palynologists, researchers studying tiny microscopic objects such as pollen and spores. Although often claimed, there is too little exchange between the different disciplines. Scientific papers typically treat a single topic. Anything else, such as cross-disciplinary research were different fields of science fertilise each other, is rare and difficult to publish. Partly because the so-called "peers", usually anonymous said-experts who judge the quality of a scientific paper, are, like far the most scientists, specialists with limited insight in other disciplines. We tried to bridge this gap. The results were a series of scientific publications including some truly cross-disciplinary ones that highlight the great value and potential of palynological data, fossil pollen, for other biological disciplines such as molecular dating and biogeography. We showed how the oldest record of beech trees and their relatives, such as oak and chestnut, agrees with evidence from molecular dating. We highlighted the importance of Greenland as ancient home of today equatorial and southern hemispheric plants and demonstrated the utility of pollen for better understanding of the evolutionary history of the Loranthaceae, a tropical- subtropical group of mistle-toes. The hope is that our studies will motivate other researchers to follow the path we laid out and take up similar research tasks, and try to bridge the widening gaps between different fields of science. The main message of our project is that it may be difficult, but it can be done, and it is worthwhile.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Susanne Renner, University of Munich - Germany
  • Marco Simeone, Universita degli Studi della Tuscia - Italy
  • Alastair Potts, Nelson Mandela Metropolitan University - South Africa
  • Thomas Denk, Swedish Museum of Natural History - Sweden
  • Andrew Hipp, The Morton Arboretum - USA

Research Output

  • 736 Citations
  • 29 Publications
  • 4 Datasets & models
  • 1 Software
Publications
  • 2016
    Title Fables and foibles: A critical analysis of the Palaeoflora database and the Coexistence Approach for palaeoclimate reconstruction
    DOI 10.1016/j.revpalbo.2016.07.001
    Type Journal Article
    Author Grimm G
    Journal Review of Palaeobotany and Palynology
    Pages 216-235
    Link Publication
  • 2016
    Title Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth–death clock model
    DOI 10.1098/rstb.2015.0135
    Type Journal Article
    Author Renner S
    Journal Philosophical Transactions of the Royal Society B: Biological Sciences
    Pages 20150135
    Link Publication
  • 2016
    Title A revised stratigraphy for the Palaeocene Agatdalen flora (Nuussuaq Peninsula, western Greenland): correlating fossiliferous outcrops, macrofossils, and palynological samples from phosphoritic nodules
    DOI 10.1515/acpa-2016-0009
    Type Journal Article
    Author Grímsson F
    Journal Acta Palaeobotanica
    Pages 307-327
    Link Publication
  • 2016
    Title Cretaceous and Paleogene Fagaceae from North America and Greenland: evidence for a Late Cretaceous split between Fagus and the remaining Fagaceae
    DOI 10.1515/acpa-2016-0016
    Type Journal Article
    Author Grímsson F
    Journal Acta Palaeobotanica
    Pages 247-305
    Link Publication
  • 2016
    Title Fallacies and fantasies: the theoretical underpinnings of the Coexistence Approach for palaeoclimate reconstruction
    DOI 10.5194/cp-12-611-2016
    Type Journal Article
    Author Grimm G
    Journal Climate of the Past
    Pages 611-622
    Link Publication
  • 2018
    Title Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation
    DOI 10.7287/peerj.preprints.26995
    Type Preprint
    Author Cardoni S
  • 2018
    Title Plant fossils reveal major biomes occupied by the late Miocene Old-World Pikermian fauna
    DOI 10.1038/s41559-018-0695-z
    Type Journal Article
    Author Denk T
    Journal Nature Ecology & Evolution
    Pages 1864-1870
  • 2018
    Title Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation
    DOI 10.7717/peerj.5793
    Type Journal Article
    Author Simeone M
    Journal PeerJ
    Link Publication
  • 2017
    Title Evolution of pollen morphology in Loranthaceae
    DOI 10.1080/00173134.2016.1261939
    Type Journal Article
    Author Grímsson F
    Journal Grana
    Pages 16-116
    Link Publication
  • 2017
    Title Taxonomy and palaeoecology of two widespread western Eurasian Neogene sclerophyllous oak species: Quercus drymeja Unger and Q. mediterranea Unger
    DOI 10.1016/j.revpalbo.2017.01.005
    Type Journal Article
    Author Denk T
    Journal Review of Palaeobotany and Palynology
    Pages 98-128
    Link Publication
  • 2017
    Title Intertwining phylogenetic trees and networks
    DOI 10.1111/2041-210x.12760
    Type Journal Article
    Author Schliep K
    Journal Methods in Ecology and Evolution
    Pages 1212-1220
    Link Publication
  • 2017
    Title Additional file 2: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d2.v1
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 2: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d2
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 4: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d4
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 4: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d4.v1
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 5: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d5
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 5: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d5.v1
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.60692/80qtb-m5q38
    Type Other
    Author Arnaud Mouly
    Link Publication
  • 2017
    Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.60692/4tehp-fjf45
    Type Other
    Author Arnaud Mouly
    Link Publication
  • 2017
    Title Additional file 1: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d1
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title Additional file 1: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d1.v1
    Type Other
    Author Banag C
    Link Publication
  • 2017
    Title A Winteraceae pollen tetrad from the early Paleocene of western Greenland, and the fossil record of Winteraceae in Laurasia and Gondwana
    DOI 10.1111/jbi.13154
    Type Journal Article
    Author Grímsson F
    Journal Journal of Biogeography
    Pages 567-581
  • 2016
    Title Intertwining phylogenetic trees and networks
    DOI 10.7287/peerj.preprints.2054v1
    Type Preprint
    Author Schliep K
    Link Publication
  • 2016
    Title Intertwining phylogenetic trees and networks
    DOI 10.7287/peerj.preprints.2054
    Type Preprint
    Author Schliep K
    Link Publication
  • 2017
    Title Eocene Loranthaceae pollen pushes back divergence ages for major splits in the family
    DOI 10.7717/peerj.3373
    Type Journal Article
    Author Grímsson F
    Journal PeerJ
    Link Publication
  • 2017
    Title Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.1186/s12862-017-0974-3
    Type Journal Article
    Author Banag C
    Journal BMC Evolutionary Biology
    Pages 131
    Link Publication
  • 2017
    Title Tiny pollen grains: first evidence of Saururaceae from the Late Cretaceous of western North America
    DOI 10.7717/peerj.3434
    Type Journal Article
    Author Grímsson F
    Journal PeerJ
    Link Publication
  • 2017
    Title The fossil Osmundales (Royal Ferns)—a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes
    DOI 10.7717/peerj.3433
    Type Journal Article
    Author Bomfleur B
    Journal PeerJ
    Link Publication
  • 2015
    Title Combined LM and SEM study of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin, Austria: part IV. Magnoliophyta 2 – Fagales to Rosales
    DOI 10.1080/00173134.2015.1096566
    Type Journal Article
    Author Grímsson F
    Journal Grana
    Pages 101-163
    Link Publication
Datasets & models
  • 2019 Link
    Title Evolution of pollen morphology in Loranthaceae
    DOI 10.6084/m9.figshare.4737352
    Type Database/Collection of data
    Public Access
    Link Link
  • 2018 Link
    Title Data from: The fossil Osmundales (Royal Ferns)-a phylogenetic network analysis, revised taxonomy, and evolutionary classification of anatomically preserved trunks and rhizomes
    DOI 10.5061/dryad.270gs
    Type Database/Collection of data
    Public Access
    Link Link
  • 2017 Link
    Title Additional file 3: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d3
    Type Database/Collection of data
    Public Access
    Link Link
  • 2017 Link
    Title Additional file 3: of Ixora (Rubiaceae) on the Philippines - crossroad or cradle?
    DOI 10.6084/m9.figshare.c.3798205_d3.v1
    Type Database/Collection of data
    Public Access
    Link Link
Software
  • 2017 Link
    Title Major update of Phangorn library for R
    Link Link

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