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QMMM Chemical Simulations

QMMM Chemical Simulations

Bernd-Michael Rode (ORCID: )
  • Grant DOI 10.55776/P13644
  • Funding program Principal Investigator Projects
  • Status ended
  • Start November 1, 1999
  • End October 31, 2002
  • Funding amount € 74,036
  • Project website

Disciplines

Chemistry (100%)

Keywords

    SOLVATED IONS, QUANTUM MECHANICAL SIMULATION, ELECTROLYTE SOLUTION, TRANSITION METAL IONS, STATISTICAL SIMULATION

Abstract Final report

A recently developed method to describe ions in solution by combined Born-Oppenheimer Quantum Mechanics - Molecular Mechanics simulations of either Molecular Dynamics or Monte Carlo type will be implemented using parallel processing for the most time-consuming computational part, namely the evaluation of Hartree-Fock forces and energies, thus allowing the investigation of a series of solvated cations in water, pure and aqueous ammonia. The results of the first applications of QM/MM simulations have not only shown that the implicit inclusion of many-body effects (up to 10) improves decisively the results for solvated divalent ions [1,2], but appears also necessary for the correct reproduction of fundamental properties of monovalent main group cations as structure- forming and structure-breaking effects [3]. The well-known Jahn-Teller effect for Cu(II) in aqueous solution could also be reproduced and investigated in detail only on the basis of this multibody, quantum mechanically corrected approach [2]. The focus of the applications envisaged for this project will be centered on simulations of divalent and trivalent first row transition metal ions, which are not only of fundamental interest for the understanding of their complex chemistry (in both senses of this term!), but will also provide crucial test examples for widely used chemical models such as crystal field and ligand field "theory". The new approach is expected, by the inclusion of many- body effects for the complete first solvation shell, to give the most accurate description available so far for these ions in solution, and to supply substantial data for the interpretation of ligand exchange mechanisms for these ions and thus for testing also the exchange-related simple models widely used in the discussion of spectroscopic data, e.g. high-pressure NMR experiments. In the case of aqueous ammonia solutions of varying composition, the coordination number distributions available from a detailed analysis of the simulations will further allow a comparison with complex formation constants determined experimentally, and supply detailed structures for all microspecies realised in the equilibrium state of such a solute-solvent system.

Using Molecular Dynamics Simulations a highly accurate description of structure and dynamics was obtained for a large number of metal ions in aqueous solution. The high accuracy was achieved by a complete quantum mechanical treatment of the ions and their nearest environment, and the enormous computational effort of several months of CP time per ion could be managed in a most economic way using parallel-processing clusters of PCs. The data obtained do not only represent a substantial progress in understanding the chemistry of electrolyte solutions, but also for numerous biological processes, where the investigated main group and transition metal ions play a central role. In order to visualize the results, a new program package has been developed, which allowed the production of video clips showing the dynamical processes on a femto and pico second scale, thus allowing insight into important reactions such as the exchange process of ligands. The results lead to 20 publications in international journals, 2 invited review articles and 2 invitations for plenary lectures at international conferences.

Research institution(s)
  • Universität Innsbruck - 100%
Project participants
  • Klaus R. Liedl, Universität Innsbruck , associated research partner

Research Output

  • 671 Citations
  • 18 Publications
Publications
  • 2004
    Title Molecular dynamics simulation of the hydration of transition metal ions: the role of non-additive effects in the hydration shells of Fe2+ and Fe3+ ions
    DOI 10.1016/j.cplett.2004.01.016
    Type Journal Article
    Author Remsungnen T
    Journal Chemical Physics Letters
    Pages 491-497
  • 2003
    Title Dynamics in the hydration shell of Hg2+ ion: classical and ab initio QM/MM molecular dynamics simulations
    DOI 10.1016/s0009-2614(03)00301-4
    Type Journal Article
    Author Kritayakornupong C
    Journal Chemical Physics Letters
    Pages 438-444
  • 2003
    Title Structure and Dynamics of Metal Ions in Solution: QM/MM Molecular Dynamics Simulations of Mn2+ and V2+
    DOI 10.1021/ja0286831
    Type Journal Article
    Author Schwenk C
    Journal Journal of the American Chemical Society
    Pages 1618-1624
  • 2003
    Title Influence of heteroligands on structural and dynamical properties of hydrated Cu 2+ : QM/MM MD simulations
    DOI 10.1039/b304898e
    Type Journal Article
    Author Schwenk C
    Journal Physical Chemistry Chemical Physics
    Pages 3418-3427
  • 2003
    Title Dynamical properties of the water molecules in the hydration shells of Fe(II) and Fe(III) ions: ab initio QM/MM molecular dynamics simulations
    DOI 10.1016/s0009-2614(02)01803-1
    Type Journal Article
    Author Remsungnen T
    Journal Chemical Physics Letters
    Pages 586-592
  • 2003
    Title MD and MC simulations of hydrated manganous ion including three-body effects
    DOI 10.1016/s0166-1280(02)00472-4
    Type Journal Article
    Author Yagüe J
    Journal Journal of Molecular Structure: THEOCHEM
    Pages 15-20
  • 2003
    Title The hydration structures of F - and Cl - investigated by ab initio QM/MM molecular dynamics simulations
    DOI 10.1039/b209240a
    Type Journal Article
    Author Tongraar A
    Journal Physical Chemistry Chemical Physics
    Pages 357-362
  • 2002
    Title Librational, vibrational, and exchange motions of water molecules in aqueous Ni(II) solution: classical and QM/MM molecular dynamics simulations
    DOI 10.1016/s0009-2614(02)00645-0
    Type Journal Article
    Author Inada Y
    Journal Chemical Physics Letters
    Pages 449-458
  • 2002
    Title Preferential solvation of Ca 2+ in aqueous ammonia solution: Classical and combined ab initio quantum mechanical/molecular mechanical molecular dynamics simulations
    DOI 10.1039/b107786d
    Type Journal Article
    Author Tongraar A
    Journal Physical Chemistry Chemical Physics
    Pages 628-634
  • 2002
    Title QM/MM–MD simulation of hydrated vanadium(II) ion
    DOI 10.1016/s0009-2614(02)01209-5
    Type Journal Article
    Author Loeffler H
    Journal Chemical Physics Letters
    Pages 367-371
  • 2002
    Title Many-Body Effects in Combined Quantum Mechanical/Molecular Mechanical Simulations of the Hydrated Manganous Ion
    DOI 10.1021/jp020443k
    Type Journal Article
    Author Loeffler H
    Journal The Journal of Physical Chemistry A
    Pages 9529-9532
  • 2002
    Title Molecular Dynamics Simulations of the Hydrated Trivalent Transition Metal Ions Ti3+, Cr3+, and Co3+
    DOI 10.1021/jp020997n
    Type Journal Article
    Author Kritayakornupong C
    Journal The Journal of Physical Chemistry A
    Pages 10584-10589
  • 2002
    Title Hydration Structure and Water Exchange Reaction of Nickel(II) Ion: Classical and QM/MM Simulations
    DOI 10.1021/jp0155314
    Type Journal Article
    Author Inada Y
    Journal The Journal of Physical Chemistry A
    Pages 6783-6791
  • 2001
    Title Effects of Many-Body Interactions on the Preferential Solvation of Mg2+ in Aqueous Ammonia Solution: A Born-Oppenheimer ab Initio QM/MM Dynamics Study
    DOI 10.1021/jp012103p
    Type Journal Article
    Author Tongraar A
    Journal The Journal of Physical Chemistry B
    Pages 10559-10564
  • 2001
    Title Classical and Mixed Quantum Mechanical/Molecular Mechanical Simulation of Hydrated Manganous Ion
    DOI 10.1021/jp010436g
    Type Journal Article
    Author Yagüe J
    Journal The Journal of Physical Chemistry A
    Pages 7646-7650
  • 2001
    Title Preferential Cu2+ solvation in aqueous ammonia solution of various concentrations
    DOI 10.1016/s0301-0104(00)00313-x
    Type Journal Article
    Author Pranowo H
    Journal Chemical Physics
    Pages 1-6
  • 2001
    Title Dynamics of the solvation process of Ca2+ in water
    DOI 10.1016/s0009-2614(01)01188-5
    Type Journal Article
    Author Schwenk C
    Journal Chemical Physics Letters
    Pages 99-103
  • 2001
    Title The role of non-additive contributions on the hydration shell structure of Mg2+ studied by Born–Oppenheimer ab initio quantum mechanical/molecular mechanical molecular dynamics simulation
    DOI 10.1016/s0009-2614(01)00923-x
    Type Journal Article
    Author Tongraar A
    Journal Chemical Physics Letters
    Pages 485-491

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