Simulation of Ligand Exchange Reactions
Simulation of Ligand Exchange Reactions
Disciplines
Chemistry (100%)
Keywords
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Molecular Dynamics,
Quantum Chemical Simulations,
Ligand Exchange Reactions,
Complex Chemistry,
Solvation,
Reaction Mechanisms
The development of intermolecular potentials including 3-body terms based on Hartree-Fock ab initio calculations and of a mixed quantum mechanical / molecular mechanical approach to molecular dynamics simulations for a larger number of ions has shown that it is possible through such simulations, to obtain very detailed information about the mechanism of very fast ligand exchange reactions in complexes. Numerous models have been proposed for such reactions, but due to the time-scale in the picosecond range, they can hardly be verified by experimental methods. The present project intends to systematically investigate such reactions by means of the aforementioned simulation technique, in order to obtain a solid basis for the interpretation of experimental data, and for the mechanism of these reactions. The systems envisaged for these investigations are solvate complexes of alkaline, alkaline earth and transition metal ions, plus a few selected monoatomic anions. Water, ammonia and complex-forming anions will be considered as ligands involved in the exchange reactions. In the case of transition metal ions with very stable first hydration shell, exchange reactions in the second solvation sphere and replacement of first-shell water by ligands of affinity higher than water will be investigated. Apart from " classical" publications, the results of these investigations will be presented in the form of video clips, with the help of a proprietary software (MOLVISION) recently developed by the applicant and coworkers. These video clips will be made available via the Internet and provide a most illustrative description of the chemical reactions investigated.
As most of the relevant chemical reactions proceed in the liquid state and almost all biochemical processes in aqueous medium, the detailed understanding of solvation is crucial for the understanding of chemistry and related disciplines. This is particularly true for solvated ions, which play manifold roles in chemistry and biology. Experimental investigations of structure and dynamics of liquid systems are highly complicated and expensive, and for numerous processes suitable experimental settings are not even available yet. Classical theoretical simulation methods for liquids on the other hand are mostly not accurate enough to correctly reveal all details of solvated ions and molecules. The target of the present project was, therefore, to develop further the methodology of hybrid quantum mechanical - molecular mechanical molecular dynamics simulations, which provide the required accuracy, albeit at the price of an almost hundred-fold computational effort. With this methodology a large number of chemically and biologically important ions was studied, focussing on the dynamics of ligand exchange, which is crucial for the reactivity of these ions in the liquid state and in the interaction with other compounds than the solvent itself. The 25 metal ions investigated in this project are representative for the most important parts of the periodic system, ranging from extremely stable solvates to the most labile structure-breakers. Besides water, ammonia and aqueous ammonia were included as solvents, and particular attention was paid to the influence of heteroligands in metal complexes on the dynamics of ligand exchange reactions. In addition, two halide anions were included in the studies, and an extensive investigation of liquid water by various levels of quantum mechanical simulation was performed, which proved the accuracy of the employed method by its full agreement with the most recent and sophisticated experimental techniques concerning hydrogen bonding and the ultrafast exchange rates. In the progress of the project work, ideas for a new, strongly inproved quantum mechanical ab initio simulation methodology (later on termed Quantum Mechanical Charge Field Molecular Dynamics, QMCF MD) were developed and successfully translated into a new program code. This new method provides the access to simulations of composite solutes without the need of analytical potentials and further improves the accuracy of the simulations for systems with strong charge-transfer and polarisation effects. The project resulted in 55 peer-reviewed publications, including 3 invited book contributions and 2 invited review articles. 3 of the other publications were also solicited articles. A number of invited lectures at international conferences document the broad interest in the project results.
- Universität Innsbruck - 100%
Research Output
- 1518 Citations
- 41 Publications
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2019
Title Ab initio QMM/MM Simulations: A Powerful Tool for the Study of Structure and Ultrafast Dynamics of Electrolyte Solutions DOI 10.1201/9780429081385-282 Type Book Chapter Author Rode B Publisher Taylor & Francis Pages 1112-1114 -
2007
Title Quantum mechanical/molecular mechanical simulations of the Tl(III) ion in water DOI 10.1002/jcc.20486 Type Journal Article Author Vchirawongkwin V Journal Journal of Computational Chemistry Pages 1057-1067 -
2007
Title Quantum mechanical charge field molecular dynamics simulation of the TiO2+ ion in aqueous solution DOI 10.1002/jcc.20659 Type Journal Article Author Fatmi M Journal Journal of Computational Chemistry Pages 1704-1710 -
2006
Title Structure and dynamics of the [Zn(NH 3 )(H 2 O) 5 ] 2+ complex in aqueous solution obtained by an ab initio QM/MM molecular dynamics study DOI 10.1039/b518223a Type Journal Article Author Fatmi M Journal Physical Chemistry Chemical Physics Pages 1675-1681 -
2006
Title Be( ii ) in aqueous solution—an extended ab initio QM/MM MD study DOI 10.1039/b603222b Type Journal Article Author D’Incal A Journal Physical Chemistry Chemical Physics Pages 2841-2847 -
2006
Title A Combined QM/MM Molecular Dynamics Simulations Study of Nitrate Anion (NO3 -) in Aqueous Solution DOI 10.1021/jp064779w Type Journal Article Author Tongraar A Journal The Journal of Physical Chemistry A Pages 12918-12926 Link Publication -
2006
Title A QM/MM MD simulation study of hydrated Pd2+ DOI 10.1016/j.cplett.2006.05.132 Type Journal Article Author Shah S Journal Chemical Physics Letters Pages 301-305 -
2006
Title Structure and dynamics of La(III) in aqueous solution – An ab initio QM/MM MD approach DOI 10.1016/j.chemphys.2006.03.045 Type Journal Article Author Hofer T Journal Chemical Physics Pages 31-42 -
2006
Title Hydrogen bonding in liquid water: An ab initio QM/MM MD simulation study DOI 10.1016/j.molliq.2005.06.002 Type Journal Article Author Xenides D Journal Journal of Molecular Liquids Pages 61-67 -
2006
Title The dynamics of the solvation of Pb(II) in aqueous solution obtained by an ab initio QM/MM MD approach DOI 10.1016/j.chemphys.2005.10.041 Type Journal Article Author Hofer T Journal Chemical Physics Pages 473-478 -
2006
Title The influence of quantum forces on molecular dynamics simulation results for hydrated aluminium(III) DOI 10.1016/j.cplett.2006.03.012 Type Journal Article Author Hofer T Journal Chemical Physics Letters Pages 492-495 -
2005
Title Structural and dynamical properties of Bi3+ in water DOI 10.1016/j.cplett.2005.02.082 Type Journal Article Author Durdagi S Journal Chemical Physics Letters Pages 20-23 -
2005
Title Structure-breaking effects of solvated Rb(I) in dilute aqueous solution—An ab initio QM/MM MD approach DOI 10.1002/jcc.20232 Type Journal Article Author Hofer T Journal Journal of Computational Chemistry Pages 949-956 -
2005
Title An extended ab initio QM/MM MD approach to structure and dynamics of Zn(II) in aqueous solution DOI 10.1063/1.1996575 Type Journal Article Author Fatmi M Journal The Journal of Chemical Physics Pages 054514 -
2005
Title Structure and Dynamics of Solvated Sn(II) in Aqueous Solution: An ab Initio QM/MM MD Approach DOI 10.1021/ja052700f Type Journal Article Author Hofer T Journal Journal of the American Chemical Society Pages 14231-14238 -
2005
Title Structure and dynamics of solvated Ba(II) in dilute aqueous solution – an ab initio QM/MM MD approach DOI 10.1016/j.chemphys.2004.11.023 Type Journal Article Author Hofer T Journal Chemical Physics Pages 81-88 -
2005
Title The influence of heteroligands on the reactivity of Ni 2+ in solution DOI 10.1039/b419072f Type Journal Article Author Schwenk C Journal Physical Chemistry Chemical Physics Pages 1669-1673 -
2005
Title Influence of polarization and many body quantum effects on the solvation shell of Al( iii ) in dilute aqueous solution—extended ab initio QM/MM MD simulations DOI 10.1039/b417491g Type Journal Article Author Hofer T Journal Physical Chemistry Chemical Physics Pages 1382-1387 -
2005
Title Ab initio QM/MM dynamics of anion–water hydrogen bonds in aqueous solution DOI 10.1016/j.cplett.2005.01.017 Type Journal Article Author Tongraar A Journal Chemical Physics Letters Pages 314-319 -
2005
Title Structure and ultrafast dynamics of liquid water: A quantum mechanics/molecular mechanics molecular dynamics simulations study DOI 10.1063/1.1888465 Type Journal Article Author Xenides D Journal The Journal of Chemical Physics Pages 174506 -
2005
Title Ab Initio QM/MM Simulation of Ag+ in 18.6% Aqueous Ammonia Solution: Structure and Dynamics Investigations DOI 10.1021/jp0462916 Type Journal Article Author Armunanto R Journal The Journal of Physical Chemistry A Pages 4437-4441 -
2005
Title Temperature Effects on the Structural and Dynamical Properties of the Zn(II)-Water Complex in Aqueous Solution: A QM/MM Molecular Dynamics Study DOI 10.1021/jp0546655 Type Journal Article Author Fatmi M Journal The Journal of Physical Chemistry B Pages 616-621 -
2005
Title Structural arrangement and dynamics of the hydrated Mg2+: An ab initio QM/MM molecular dynamics simulation DOI 10.1016/j.cplett.2005.04.062 Type Journal Article Author Tongraar A Journal Chemical Physics Letters Pages 304-309 -
2004
Title Structure and dynamics of the Cr(III) ion in aqueous solution: Ab initio QM/MM molecular dynamics simulation DOI 10.1002/jcc.20085 Type Journal Article Author Kritayakornupong C Journal Journal of Computational Chemistry Pages 1576-1583 -
2004
Title Structure and Dynamics of Au+ Ion in Aqueous Solution: Ab Initio QM/MM MD Simulations DOI 10.1021/ja037340f Type Journal Article Author Armunanto R Journal Journal of the American Chemical Society Pages 2582-2587 -
2004
Title Gold(I) in Liquid Ammonia: Ab Initio QM/MM Molecular Dynamics Simulation DOI 10.1021/ja031740l Type Journal Article Author Armunanto R Journal Journal of the American Chemical Society Pages 9934-9935 -
2004
Title Ag(I) ion in liquid ammonia DOI 10.1016/j.cplett.2004.03.035 Type Journal Article Author Armunanto R Journal Chemical Physics Letters Pages 395-399 -
2004
Title The Jahn–Teller Effect of the TiIII Ion in Aqueous Solution: Extended Ab Initio QM/MM Molecular Dynamics Simulations DOI 10.1002/cphc.200400019 Type Journal Article Author Kritayakornupong C Journal ChemPhysChem Pages 1499-1506 -
2004
Title Influence of Electron Correlation Effects on the Solvation of Cu2+ DOI 10.1021/ja046784o Type Journal Article Author Schwenk C Journal Journal of the American Chemical Society Pages 12786-12787 -
2004
Title Cuii in Liquid Ammonia: An Approach by Hybrid Quantum-Mechanical/Molecular-Mechanical Molecular Dynamics Simulation DOI 10.1002/cphc.200300972 Type Journal Article Author Schwenk C Journal ChemPhysChem Pages 342-348 -
2004
Title Structure and dynamics of hydrated ions—new insights through quantum mechanical simulations DOI 10.1016/j.molliq.2003.09.016 Type Journal Article Author Rode B Journal Journal of Molecular Liquids Pages 105-122 -
2004
Title “Structure Breaking” Effect of Hydrated Cs+ DOI 10.1021/jp037179v Type Journal Article Author Schwenk C Journal The Journal of Physical Chemistry A Pages 1509-1514 -
2004
Title Dynamical properties of water molecules in the hydration shells of Na+ and K+: ab initio QM/MM molecular dynamics simulations DOI 10.1016/j.cplett.2004.01.010 Type Journal Article Author Tongraar A Journal Chemical Physics Letters Pages 378-383 -
2004
Title Ab initio QM/MM molecular dynamics simulation of preferential K + solvation in aqueous ammonia solution DOI 10.1039/b310825b Type Journal Article Author Tongraar A Journal Physical Chemistry Chemical Physics Pages 411-416 -
2004
Title Structure and dynamics of Co2+ in liquid ammonia: ab initio QM/MM molecular dynamics simulation DOI 10.1016/j.chemphys.2004.06.049 Type Journal Article Author Armunanto R Journal Chemical Physics Pages 135-140 -
2003
Title Structure and Dynamics of Hydrated Ag (I): Ab Initio Quantum Mechanical-Molecular Mechanical Molecular Dynamics Simulation DOI 10.1021/jp027769d Type Journal Article Author Armunanto R Journal The Journal of Physical Chemistry A Pages 3132-3138 -
2003
Title QM/MM Molecular Dynamics Simulation of the Structure of Hydrated Fe(II) and Fe(III) Ions DOI 10.1021/jp027007i Type Journal Article Author Remsungnen T Journal The Journal of Physical Chemistry A Pages 2324-2328 -
2003
Title Structure and Dynamics of the Cd2+ Ion in Aqueous Solution: Ab Initio QM/MM Molecular Dynamics Simulation DOI 10.1021/jp0354548 Type Journal Article Author Kritayakornupong C Journal The Journal of Physical Chemistry A Pages 10330-10334 -
2003
Title Ultrafast ligand exchange rates determined by ab initio QM/MM molecular dynamics DOI 10.1016/j.cplett.2003.10.043 Type Journal Article Author Schwenk C Journal Chemical Physics Letters Pages 460-465 -
2003
Title Classical and QM/MM molecular dynamics simulations of Co2+ in water DOI 10.1016/j.chemphys.2003.08.006 Type Journal Article Author Armunanto R Journal Chemical Physics Pages 63-70 -
2003
Title New Insights into the Jahn–Teller Effect through ab initio Quantum-Mechanical/Molecular-Mechanical Molecular Dynamics Simulations of CuII in Water DOI 10.1002/cphc.200300659 Type Journal Article Author Schwenk C Journal ChemPhysChem Pages 931-943