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Computational solvation dynamics of oxyquinolines

Computational solvation dynamics of oxyquinolines

Christian Schröder (ORCID: 0000-0002-2167-5096)
  • Grant DOI 10.55776/P28556
  • Funding program Principal Investigator Projects
  • Status ended
  • Start February 1, 2016
  • End September 30, 2019
  • Funding amount € 143,535
  • Project website

Disciplines

Chemistry (70%); Computer Sciences (30%)

Keywords

    Solvation Dynamics, Dielectric Spectroscopy, Polarizable Md Simulations

Abstract Final report

Solvation dynamics is one key aspect of any chemical reaction. The spectral response of a solvatochromic solute on laser excitation, the so-called time-dependent Stokes shift, provides crucial information on the solute photoreactivity and the solvent reorganization. In here, we propose a novel approach for computational solvation dynamics, combining quantum-mechanical calculations, (non-)equilibrium polarizable MD simulations and sophisticated free energy calculations. Chemical alteration of the side chains of oxyquinolines in this projects change their volume (and consequently the rotational behavior) and the strength and orientation of their dipole moments. We will analyzed the corresponding solvation effects and directly juxtapose our computational results for these oxyquinolines in various solvents to the corresponding experimental data of our cooperation partner. In contrast to the standard solvatochromatic solute coumarin C153, oxyquinolines tend to decrease their dipole moment during excitation and consequently serve as a test for the general findings on solvation dynamics gained so far. Thecomputationaldecompositionintotranslational/rotational, cationic/anionicor permanent/induced dipole contributions of the Stokes shift as well as the frequency-dependent dielectric spectra will equally provide novel insight in the role of the respective solvent and identify its key contributions for solvation dynamics. For less fluid solvents long-time simulations of dozens of nanoseconds are inevitable and thus unfeasible by quantum-mechanical approaches. The major advantage of our polarizable MD simulations is the modeling of electronic effects of the solvent while these simulation periods are still manageable.

Quite generally, chemists focus on the reacting compounds and products in their investigations and pay less attention to the solvent. The solvent is often only characterized in terms of the solubility of the participating compounds. However, solvation dynamics is a key aspect in many chemical reactions as the solvent may stabilize transition states and consequently, the dynamic response and the interactions of the solvent to the transitioning molecules may decide on the outcome of a particular reaction at certain reaction conditions. In the current project, we investigated the fundamental techniques to compute the Stokes shift. We improved force fields to come closer to experimental results and applied our methods to the investigation of solvation dynamics near a tert-butyl group, trehalose and at the surface of proteins.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Nikolaus Ernsting, Humboldt-Universität zu Berlin - Germany

Research Output

  • 631 Citations
  • 14 Publications
  • 1 Fundings
Publications
  • 2018
    Title Evaluating excited state atomic polarizabilities of chromophores
    DOI 10.1039/c7cp08549d
    Type Journal Article
    Author Heid E
    Journal Physical Chemistry Chemical Physics
    Pages 8554-8563
    Link Publication
  • 2021
    Title The small impact of various partial charge distributions in ground and excited state on the computational Stokes shift of 1-methyl-6-oxyquinolinium betaine in diverse water models
    DOI 10.48550/arxiv.2105.09212
    Type Preprint
    Author Heid E
  • 2021
    Title Computational solvation dynamics of oxyquinolinium betaine linked to trehalose
    DOI 10.48550/arxiv.2105.09236
    Type Preprint
    Author Heid E
  • 2021
    Title Effect of a Tertiary Butyl Group on Polar Solvation Dynamics in Aqueous Solution: A Computational Approach
    DOI 10.48550/arxiv.2105.09256
    Type Preprint
    Author Heid E
  • 2018
    Title Solvation dynamics in polar solvents and imidazolium ionic liquids: failure of linear response approximations
    DOI 10.1039/c7cp07052g
    Type Journal Article
    Author Heid E
    Journal Physical Chemistry Chemical Physics
    Pages 5246-5255
    Link Publication
  • 2019
    Title Computational spectroscopy of trehalose, sucrose, maltose, and glucose: A comprehensive study of TDSS, NQR, NOE, and DRS
    DOI 10.1063/1.5095058
    Type Journal Article
    Author Heid E
    Journal The Journal of Chemical Physics
    Pages 175102
    Link Publication
  • 2019
    Title Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields
    DOI 10.1021/acs.chemrev.8b00763
    Type Journal Article
    Author Bedrov D
    Journal Chemical Reviews
    Pages 7940-7995
    Link Publication
  • 2019
    Title Changes in protein hydration dynamics by encapsulation or crowding of ubiquitin: strong correlation between time-dependent Stokes shift and intermolecular nuclear Overhauser effect
    DOI 10.1039/c9ra08008b
    Type Journal Article
    Author Honegger P
    Journal RSC Advances
    Pages 36982-36993
    Link Publication
  • 2016
    Title Computational solvation dynamics of oxyquinolinium betaine linked to trehalose
    DOI 10.1063/1.4966189
    Type Journal Article
    Author Heid E
    Journal The Journal of Chemical Physics
    Pages 164507
    Link Publication
  • 2016
    Title The small impact of various partial charge distributions in ground and excited state on the computational Stokes shift of 1-methyl-6-oxyquinolinium betaine in diverse water models
    DOI 10.1063/1.4966147
    Type Journal Article
    Author Heid E
    Journal The Journal of Chemical Physics
    Pages 164506
    Link Publication
  • 2017
    Title Effect of a Tertiary Butyl Group on Polar Solvation Dynamics in Aqueous Solution: A Computational Approach
    DOI 10.1021/acs.jpcb.7b05039
    Type Journal Article
    Author Heid E
    Journal The Journal of Physical Chemistry B
    Pages 9639-9646
  • 2017
    Title On the validity of linear response approximations regarding the solvation dynamics of polyatomic solutes
    DOI 10.1039/c6cp08575j
    Type Journal Article
    Author Heid E
    Journal Physical Chemistry Chemical Physics
    Pages 10940-10950
    Link Publication
  • 2019
    Title Solvation dynamics: improved reproduction of the time-dependent Stokes shift with polarizable empirical force field chromophore models
    DOI 10.1039/c9cp03000j
    Type Journal Article
    Author Heid E
    Journal Physical Chemistry Chemical Physics
    Pages 17703-17710
    Link Publication
  • 2020
    Title Polarizable molecular dynamics simulations of ionic liquids: Influence of temperature control
    DOI 10.1063/1.5143746
    Type Journal Article
    Author Heid E
    Journal The Journal of Chemical Physics
    Pages 094105
    Link Publication
Fundings
  • 2017
    Title DOC Fellowship
    Type Fellowship
    Start of Funding 2017
    Funder Austrian Academy of Sciences

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