Computational solvation dynamics of oxyquinolines
Computational solvation dynamics of oxyquinolines
Disciplines
Chemistry (70%); Computer Sciences (30%)
Keywords
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Solvation Dynamics,
Dielectric Spectroscopy,
Polarizable Md Simulations
Solvation dynamics is one key aspect of any chemical reaction. The spectral response of a solvatochromic solute on laser excitation, the so-called time-dependent Stokes shift, provides crucial information on the solute photoreactivity and the solvent reorganization. In here, we propose a novel approach for computational solvation dynamics, combining quantum-mechanical calculations, (non-)equilibrium polarizable MD simulations and sophisticated free energy calculations. Chemical alteration of the side chains of oxyquinolines in this projects change their volume (and consequently the rotational behavior) and the strength and orientation of their dipole moments. We will analyzed the corresponding solvation effects and directly juxtapose our computational results for these oxyquinolines in various solvents to the corresponding experimental data of our cooperation partner. In contrast to the standard solvatochromatic solute coumarin C153, oxyquinolines tend to decrease their dipole moment during excitation and consequently serve as a test for the general findings on solvation dynamics gained so far. Thecomputationaldecompositionintotranslational/rotational, cationic/anionicor permanent/induced dipole contributions of the Stokes shift as well as the frequency-dependent dielectric spectra will equally provide novel insight in the role of the respective solvent and identify its key contributions for solvation dynamics. For less fluid solvents long-time simulations of dozens of nanoseconds are inevitable and thus unfeasible by quantum-mechanical approaches. The major advantage of our polarizable MD simulations is the modeling of electronic effects of the solvent while these simulation periods are still manageable.
Quite generally, chemists focus on the reacting compounds and products in their investigations and pay less attention to the solvent. The solvent is often only characterized in terms of the solubility of the participating compounds. However, solvation dynamics is a key aspect in many chemical reactions as the solvent may stabilize transition states and consequently, the dynamic response and the interactions of the solvent to the transitioning molecules may decide on the outcome of a particular reaction at certain reaction conditions. In the current project, we investigated the fundamental techniques to compute the Stokes shift. We improved force fields to come closer to experimental results and applied our methods to the investigation of solvation dynamics near a tert-butyl group, trehalose and at the surface of proteins.
- Universität Wien - 100%
Research Output
- 631 Citations
- 14 Publications
- 1 Fundings
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2018
Title Evaluating excited state atomic polarizabilities of chromophores DOI 10.1039/c7cp08549d Type Journal Article Author Heid E Journal Physical Chemistry Chemical Physics Pages 8554-8563 Link Publication -
2021
Title The small impact of various partial charge distributions in ground and excited state on the computational Stokes shift of 1-methyl-6-oxyquinolinium betaine in diverse water models DOI 10.48550/arxiv.2105.09212 Type Preprint Author Heid E -
2021
Title Computational solvation dynamics of oxyquinolinium betaine linked to trehalose DOI 10.48550/arxiv.2105.09236 Type Preprint Author Heid E -
2021
Title Effect of a Tertiary Butyl Group on Polar Solvation Dynamics in Aqueous Solution: A Computational Approach DOI 10.48550/arxiv.2105.09256 Type Preprint Author Heid E -
2018
Title Solvation dynamics in polar solvents and imidazolium ionic liquids: failure of linear response approximations DOI 10.1039/c7cp07052g Type Journal Article Author Heid E Journal Physical Chemistry Chemical Physics Pages 5246-5255 Link Publication -
2019
Title Computational spectroscopy of trehalose, sucrose, maltose, and glucose: A comprehensive study of TDSS, NQR, NOE, and DRS DOI 10.1063/1.5095058 Type Journal Article Author Heid E Journal The Journal of Chemical Physics Pages 175102 Link Publication -
2019
Title Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields DOI 10.1021/acs.chemrev.8b00763 Type Journal Article Author Bedrov D Journal Chemical Reviews Pages 7940-7995 Link Publication -
2019
Title Changes in protein hydration dynamics by encapsulation or crowding of ubiquitin: strong correlation between time-dependent Stokes shift and intermolecular nuclear Overhauser effect DOI 10.1039/c9ra08008b Type Journal Article Author Honegger P Journal RSC Advances Pages 36982-36993 Link Publication -
2016
Title Computational solvation dynamics of oxyquinolinium betaine linked to trehalose DOI 10.1063/1.4966189 Type Journal Article Author Heid E Journal The Journal of Chemical Physics Pages 164507 Link Publication -
2016
Title The small impact of various partial charge distributions in ground and excited state on the computational Stokes shift of 1-methyl-6-oxyquinolinium betaine in diverse water models DOI 10.1063/1.4966147 Type Journal Article Author Heid E Journal The Journal of Chemical Physics Pages 164506 Link Publication -
2017
Title Effect of a Tertiary Butyl Group on Polar Solvation Dynamics in Aqueous Solution: A Computational Approach DOI 10.1021/acs.jpcb.7b05039 Type Journal Article Author Heid E Journal The Journal of Physical Chemistry B Pages 9639-9646 -
2017
Title On the validity of linear response approximations regarding the solvation dynamics of polyatomic solutes DOI 10.1039/c6cp08575j Type Journal Article Author Heid E Journal Physical Chemistry Chemical Physics Pages 10940-10950 Link Publication -
2019
Title Solvation dynamics: improved reproduction of the time-dependent Stokes shift with polarizable empirical force field chromophore models DOI 10.1039/c9cp03000j Type Journal Article Author Heid E Journal Physical Chemistry Chemical Physics Pages 17703-17710 Link Publication -
2020
Title Polarizable molecular dynamics simulations of ionic liquids: Influence of temperature control DOI 10.1063/1.5143746 Type Journal Article Author Heid E Journal The Journal of Chemical Physics Pages 094105 Link Publication
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2017
Title DOC Fellowship Type Fellowship Start of Funding 2017 Funder Austrian Academy of Sciences