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Uncage hijacked kinases from SARS-CoV-2 interactions

Uncage hijacked kinases from SARS-CoV-2 interactions

Eduard Stefan (ORCID: 0000-0003-3650-4713)
  • Grant DOI 10.55776/P35159
  • Funding program Principal Investigator Projects
  • Status ended
  • Start October 1, 2021
  • End September 30, 2025
  • Funding amount € 399,504

Disciplines

Biology (50%); Chemistry (25%); Medical-Theoretical Sciences, Pharmacy (25%)

Keywords

    Kinase, Inhibitor, Biosensor, Omics

Abstract

Kinases are versatile signaling nodes and thus represent a central target for viruses to reprogram the host cell for their needs. SARS-CoV-2 efficiently hijacks this crucial cellular control mechanism for ensuring their optimal propagation. We assume that targeting druggable kinase activities may alter SARS-CoV-2:host-protein interactions and functions. We bear the hope that targeting a hijacked host kinase may reduce virus assembly and/or pathological implications for cellular functions. We aim to validate and chemically target interdependencies emanating from two kinase cascades with viral proteins directly in human pulmonary cell lines. First, we apply a cell-based kinase conformation (KinCon) reporter for determining enzyme activity changes upon transient and viral expression of selected viral SARS-Cov-2 proteins. Second, we define the impact of kinase-directed small molecules (activators/inhibitors) on cellular SARS-CoV-2 functions. Third, we focus on modulating the cAMP-PKA and MAPK pathways to determine consequences on the effectiveness of virus assembly and function. Vaccines for combating SARS-CoV-2 infections save thousands of lives. Mutations may hamper their efficacies. We bear the hope that targeting host kinases may become part of COVID-19 and mutation-decoupled therapy approaches.

Research institution(s)
  • Medizinische Universität Innsbruck - 36%
  • Universität Innsbruck - 64%
Project participants
  • Dorothee Von Laer, Medizinische Universität Innsbruck , national collaboration partner
  • Janine Kimpel, Medizinische Universität Innsbruck , associated research partner
  • Marcel Kwiatkowski, Universität Innsbruck , national collaboration partner
International project participants
  • Susan S. Taylor, University of California - USA

Research Output

  • 199 Citations
  • 26 Publications
Publications
  • 2025
    Title Exploiting metabolic adaptations to overcome dabrafenib treatment resistance in melanoma cells
    DOI 10.1002/1878-0261.70169
    Type Journal Article
    Author Eller S
    Journal Molecular Oncology
    Link Publication
  • 2025
    Title CDK6 kinase inhibition unmasks metabolic dependencies in BCR::ABL1+ leukemia
    DOI 10.1038/s41419-025-07434-1
    Type Journal Article
    Author Scheiblecker L
    Journal Cell Death & Disease
    Pages 107
    Link Publication
  • 2025
    Title A Catalytically Inactive Protein Kinase C alpha Mutation Drives Chordoid Glioma by Pathway Rewiring
    DOI 10.1101/2025.05.30.657104
    Type Preprint
    Author Bellamy C
    Pages 2025.05.30.657104
    Link Publication
  • 2022
    Title Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures
    DOI 10.1016/j.cels.2022.09.003
    Type Journal Article
    Author Guerin N
    Journal Cell Systems
    Link Publication
  • 2022
    Title DISRUPTOR: Computational identification of oncogenic mutants disrupting protein interactions
    DOI 10.1101/2022.11.02.514903
    Type Preprint
    Author Kugler V
    Pages 2022.11.02.514903
    Link Publication
  • 2024
    Title Cdk6’s functions are critically regulated by its unique C-terminus
    DOI 10.1016/j.isci.2024.111697
    Type Journal Article
    Author Schirripa A
    Journal iScience
    Pages 111697
    Link Publication
  • 2024
    Title Phosphorylation of the compartmentalized PKA substrate TAF15 regulates RNA–protein interactions
    DOI 10.1007/s00018-024-05204-4
    Type Journal Article
    Author Feichtner A
    Journal Cellular and Molecular Life Sciences
    Pages 162
    Link Publication
  • 2023
    Title Characterizing SARS-CoV-2 neutralization profiles after bivalent boosting using antigenic cartography
    DOI 10.1038/s41467-023-41049-4
    Type Journal Article
    Author Rössler A
    Journal Nature Communications
    Pages 5224
    Link Publication
  • 2023
    Title Missense variant interaction scanning reveals a critical role of the FERM domain for tumor suppressor protein NF2 conformation and function
    DOI 10.26508/lsa.202302043
    Type Journal Article
    Author Moesslacher C
    Journal Life Science Alliance
    Link Publication
  • 2023
    Title Tracking and blocking interdependencies of cellular BRAF-MEK oncokinase activities
    DOI 10.1093/pnasnexus/pgad185
    Type Journal Article
    Author Fleischmann J
    Journal PNAS Nexus
    Link Publication
  • 2023
    Title Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions
    DOI 10.1038/s42003-023-05089-2
    Type Journal Article
    Author Kugler V
    Journal Communications Biology
    Pages 720
    Link Publication
  • 2022
    Title Tracking mutation and drug-driven alterations of oncokinase conformations
    DOI 10.1007/s12254-021-00790-6
    Type Journal Article
    Author Feichtner A
    Journal memo - Magazine of European Medical Oncology
    Pages 137-142
    Link Publication
  • 2022
    Title Resistor: an algorithm for predicting resistance mutations using Pareto optimization over multistate protein design and mutational signatures
    DOI 10.1101/2022.01.18.476733
    Type Preprint
    Author Guerin N
    Pages 2022.01.18.476733
    Link Publication
  • 2022
    Title Kinase perturbations redirect mitochondrial function in cancer
    DOI 10.26124/bec:2022-0013
    Type Journal Article
    Author Torres-Quesada O
    Journal Bioenergetics communications
    Pages 17
  • 2022
    Title BA.2 omicron differs immunologically from both BA.1 omicron and pre-omicron variants
    DOI 10.1101/2022.05.10.22274906
    Type Preprint
    Author Rössler A
    Pages 2022.05.10.22274906
    Link Publication
  • 2024
    Title Enhanced TROSY Effect in [2-19F, 2-13C] Adenosine and ATP Analogs Facilitates NMR Spectroscopy of Very Large Biological RNAs in Solution
    DOI 10.1002/anie.202316273
    Type Journal Article
    Author Juen F
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2024
    Title Enhanced TROSY Effect in [2-19F, 2-13C] Adenosine and ATP Analogs Facilitates NMR Spectroscopy of Very Large Biological RNAs in Solution
    DOI 10.1002/ange.202316273
    Type Journal Article
    Author Juen F
    Journal Angewandte Chemie
    Link Publication
  • 2024
    Title A mutation in the PRKAR1B gene drives pathological mechanisms of neurodegeneration across species
    DOI 10.1093/brain/awae154
    Type Journal Article
    Author Benjamin-Zukerman T
    Journal Brain
    Pages 3890-3905
    Link Publication
  • 2024
    Title Direct comparison of SARS-CoV-2 variant specific neutralizing antibodies in human and hamster sera
    DOI 10.1038/s41541-024-00888-y
    Type Journal Article
    Author Rössler A
    Journal npj Vaccines
    Pages 85
    Link Publication
  • 2024
    Title Impact of protein and small molecule interactions on kinase conformations
    DOI 10.7554/elife.94755
    Type Journal Article
    Author Kugler V
    Journal eLife
    Link Publication
  • 2024
    Title Impact of protein and small molecule interactions on kinase conformations
    DOI 10.7554/elife.94755.3
    Type Journal Article
    Author Kugler V
    Journal eLife
    Link Publication
  • 2024
    Title Kinases in motion: impact of protein and small molecule interactions on kinase conformations
    DOI 10.1101/2024.01.11.575270
    Type Preprint
    Author Kugler V
    Pages 2024.01.11.575270
    Link Publication
  • 2023
    Title Characterizing SARS-CoV-2 neutralization profiles after bivalent boosting using antigenic cartography
    DOI 10.1101/2023.05.02.23289412
    Type Preprint
    Author Rössler A
    Pages 2023.05.02.23289412
    Link Publication
  • 2022
    Title Missense variant interaction scanning reveals a critical role of the FERM-F3 domain for tumor suppressor protein NF2 conformation and function
    DOI 10.1101/2022.12.11.519953
    Type Preprint
    Author Moesslacher C
    Pages 2022.12.11.519953
    Link Publication
  • 2022
    Title BA.2 and BA.5 omicron differ immunologically from both BA.1 omicron and pre-omicron variants
    DOI 10.1038/s41467-022-35312-3
    Type Journal Article
    Author Rössler A
    Journal Nature Communications
    Pages 7701
    Link Publication
  • 2022
    Title Physiological Cell Culture Media Tune Mitochondrial Bioenergetics and Drug Sensitivity in Cancer Cell Models
    DOI 10.3390/cancers14163917
    Type Journal Article
    Author Torres-Quesada O
    Journal Cancers
    Pages 3917
    Link Publication

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