Disciplines
Biology (50%); Chemistry (25%); Medical-Theoretical Sciences, Pharmacy (25%)
Keywords
ERK pathway,
Protein-Protein Interaction,
Interactome,
Network Perturbations,
Network Dynamics
Abstract
To survive, cells must be able to change their behavior in response to environmental cues. The proteins
transmitting these signals and implementing the appropriate biological outcomes are organized in
pathways that maintain signal fidelity through protein-protein interaction, whereas signal strength is
regulated by feedback mechanisms including cross-talk among different pathways. A breach in signal
fidelity or a change in signal strength can have dire consequences, such as uncontrolled cell proliferation
and transformation. A case in point is the hyperactivation of the ERK signaling pathway caused by
somatic mutations in RAS, the most potent human oncogene. The RAS/RAF/MEK/ERK signaling pathway
consists of four tiers, each containing more than one enzyme (4 RAS, 3 RAF, 2 MEK, 2 ERK). The proteins
in the same tier have distinct essential functions, some of which rely on protein-protein interactions and
on their ability to cross-talk with other pathways rather than on their enzymatic activity. We are
interested in discovering how cancer-causing mutations and chemical inhibitors used in the clinic rewire
the interaction network of the ERK pathway.