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Deep 3-photon brain maging with wide scatter compensation

Deep 3-photon brain maging with wide scatter compensation

Alexander Jesacher (ORCID: 0000-0003-4285-9406)
  • Grant DOI 10.55776/P36687
  • Funding program Principal Investigator Projects
  • Status ongoing
  • Start October 2, 2023
  • End October 1, 2029
  • Funding amount € 607,389

Matching Funds - Tirol

Disciplines

Medical-Theoretical Sciences, Pharmacy (20%); Physics, Astronomy (80%)

Keywords

    3-photon microscopy, Scatter Compensation, Adaptive Optics, Brain Imaging

Abstract

To understand the functioning of a brain, it would be ideal to be able to observe it while it is thinking. It is now possible to see the activity of individual brain cells (neurons) directly under the microscope using special stains. However, the "penetration depth" of today`s microscopes is too shallow to reach brain areas beyond a few tenths of a millimeter deep. The brain tissue itself scatters the scanning laser beam and the image quality deteriorates with increasing scan depth. Our research project aims to develop methods to compensate for scattered light. These should allow lasers to be focused far into tissue, thus enabling the acquisition of high-resolution images in deeper tissue layers (beyond 1 mm depth). We combine this "adaptive optics" technique with laser light in the near-infrared range (1.3m wavelength) to further reduce scattering effects. Our project involves three main objectives: First, we will significantly accelerate stray light compensation techniques to keep up with the speed of internal micro-movements of living tissue. Second, we will significantly expand the corrected image areas. Third, we will increase the imaging depth to cover significant portions of the mouse brain. This is a key requirement to obtain a comprehensive picture of its functioning.

Research institution(s)
  • Medizinische Universität Innsbruck - 100%

Research Output

  • 6 Citations
  • 3 Publications
Publications
  • 2025
    Title Diffractive remote focusing module for high-NA scanning microscopy operating at Galvo speeds
    DOI 10.1088/2515-7647/ade1bd
    Type Journal Article
    Author Dallio M
    Journal Journal of Physics: Photonics
    Pages 035015
    Link Publication
  • 2025
    Title Fast converging iterative wavefront sensing for scatter compensation in multi-photon fluorescence microscopy
    DOI 10.1088/2515-7647/adeb1f
    Type Journal Article
    Author Nam K
    Journal Journal of Physics: Photonics
    Pages 035022
    Link Publication
  • 2024
    Title Complex-valued scatter compensation in nonlinear microscopy
    DOI 10.1103/physrevapplied.22.044036
    Type Journal Article
    Author Sohmen M
    Journal Physical Review Applied
    Pages 044036
    Link Publication

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+43 1 505 67 40

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