Integrative Structure Biology
Integrative Structure Biology
Disciplines
Biology (100%)
Keywords
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Macromolecular Structure And Dynamics,
Macromolecular Complexes,
Structure-Function Analysis,
Molecular Conformation,
Inter-Molecular Recognition,
Protein Engineering
The aim of the PhD Program is to provide selected students with an in-depth, interdisciplinary training in scientific methods to enable them to comprehend, rigorously analyse, and provide solutions to biological problems from a fundamentally structural perspective. This theme contains questions lying at the heart of modern molecular and cellular biology which are being investigated by a combination of powerful and varied techniques. Students will be trained to understand when to use these modern techniques and to gain experience in integrating the appropriate approaches to solve a biological problem in structural terms. The initial three month theoretical and practical training will emphasize the importance of validating structural data in its biological context as well as current topics such as the idea that macromolecules may have many conformations, which may vary depending on the location and the environment The participating faculty comprises ten scientists with excellent publication and funding records in analysing the structures and functions of biological macromolecules. Together, the faculty employs most of the current techniques available. Eight faculty members have substantial experience in supervising graduate students. The remaining three faculty are younger scientists in the early part of their careers who themselves will be guided in mentoring by the more experienced faculty. The added value of this PhD program lies in the in-depth training in structural biology and complementary techniques, empowering students with both conceptual framework and tools for understanding structure and function of biological molecules. Varied and complementary expertise of the participating faculty will ensure that students will be exposed to all the modern techniques and scientific methodology needed to discover and comprehend how macromolecules work. The proposed PhD projects all emphasize the integrated use of such approaches and the need for biological validation of the results. Students will be supported in their research by a co-supervisor from the program faculty and a PhD committee. Regular meetings with faculty and work in progress seminars will ensure expert scientific supervision, expose the students to methods and lines of reasoning from other areas of biology (structural, computational, cellular biology, biochemistry and biophysics) and provide expert feedback on presentation and other soft skills. Interdisciplinary faculty and the rich scientific environment of the Vienna Biocenter, as well as research stays abroad, will contribute to the academic development of the students. Specific lecture and seminar courses, visits to collaborating laboratories, the organization of an international workshop and participation at international meetings will further extend their scientific development. Courses in accompanying skills such as paper and grant writing, presentation techniques, research ethics, project management, patenting, gender issues and career planning will complete the students education. The PhD program Integrative Structural Biology is geared at producing alumni disciplined in the use of modern techniques to analyze macromolecules, capable of analysing scientific problems by choosing the most suitable approach, and having the creativity to make unexpected discoveries in the future
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
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consortium member (01.01.2016 - 30.09.2021)
- Universität Wien
- Medizinische Universität Wien
- Institut für Molekulare Pathologie - IMP
- Kristina Djinovic-Carugo, Universität Wien , associated research partner
- David Komander, The University of Melbourne - Australia
- Bostjan Kobe, University of Queensland - Australia
- Luiz Juliano, Universidade de Sao Paulo - Brazil
- Lewis E. Kay, University of Toronto - Canada
- Julie Forman-Kay, University of Toronto - Canada
- Cheryl H Arrowsmith, University of Toronto - Canada
- Richard Stefl, Brno University of Technology - Czechia
- Didier Auboeuf, Ecole Normale Superieure de Lyon - France
- Fabien Ferrage, Ecole Normale Supérieure - France
- Geoffrey Bodenhausen, Ecole Normale Supérieure de Paris - France
- Bernhard Brutscher, UMR 5075 CNRS-CEA-UJF - France
- Derrick R. Robinson, University of Bordeaux - France
- Melanie Bonhivers, University of Bordeaux - France
- Florian Fröhlich, Universität Osnabrück - Germany
- Bettina Warscheid, Universität Freiburg - Germany
- Michael Ehrmann, Universität Duisburg-Essen - Germany
- Dieter O. Fürst, Universität Bonn - Germany
- Clemens Steegborn, Universität Bayreuth - Germany
- Carsten Schultz, Ruprecht-Karls-Universität Heidelberg - Germany
- Enrica Bordignon, Ruhr Universität Bochum - Germany
- Stefan Raunser, Max-Planck-Gesellschaft - Germany
- Brenda A. Schulman, Max-Planck-Institut - Germany
- Vladimir Pena, Max-Planck-Gesellschaft - Germany
- Samuel Wagner, Universität Tübingen - Germany
- Ivo Sbalzarini, Max Planck Institut Dresden - Germany
- Matthias Wilmanns, European Molecular Biology Laboratory Hamburg - Germany
- Dmitri I. Svergun, European Molecular Biology Laboratory Hamburg - Germany
- Ulrich Kortz, Constructor University Bremen - Germany
- Ben Engel, Max-Planck-Institut für Biochemie - Germany
- Philipp Selenko, Weizmann Institute of Science - Israel
- Isabella C. Felli, Università degli Studi di Firenze - Italy
- René F. Ketting, Royal Netherlands Academy of Arts and Sciences - Netherlands
- Navraj Pannu, Universiteit Leiden - Netherlands
- Wiktor Kozminski, Warsaw University - Poland
- Manuel Aureliano, Universidade do Algarve - Portugal
- Cynthia He, National University of Singapore - Singapore
- Subhash G. Vasudevan, National University of Singapore - Singapore
- Xavier Daura, University of Barcelona - Spain
- Miquel Pons, Universitat Autònoma de Barcelona - Spain
- Victoriano Garre, University of Murcia - Spain
- Luis Carrasco, Centro Nacional de BiotecnologÃa - Spain
- Jose Caston, Centro Nacional de BiotecnologÃa - Spain
- Nuria Verdaguer, Spanish National Research Council - Spain
- Gebhard F. X. Schertler, Paul-Scherrer-Institut Villigen - Switzerland
- Erich A. Nigg, Universität Basel - Switzerland
- Michael Shirts, University of Colorado Boulder - USA
- Jorge E. Galan, Yale University - USA
- Christian Tschudi, Yale University - USA
- Edward H. Egelman, Virginia State University - USA
- Karla Kirkegaard, University of Stanford - USA
- Liwang Cui, University of South Florida - USA
- Wei Guo, University of Pennsylvania - USA
- Nicholas G. Brown, University of North Carolina at Chapel Hill - USA
- Roberto N. De Guzman, University of Kansas - USA
- Ron D. Vale, University of California at San Francisco - USA
- Diego Acosta-Alvear, University of California at Santa Barbara - USA
- David Z. Rudner, Harvard Medical School - USA
- Karen Oegema, University of California San Diego - USA
- Eliezer Masliah, University of California San Diego - USA
- Randy Schekman, University of California Berkeley - USA
- Kurt Gustin, University of Arizona - USA
- Ziyin Li, Texas A&M University System - USA
- Hongmin Qin, Texas A&M University - USA
- Ke Hu, Indiana University - USA
- David M. Glover, California Institute of Technology - USA
- R. Holland Cheng, University of California at Davis - USA
- David Leys, University of Manchester
- Feixia Chu, University of New Hampshire
- Philipp Kukura, University of Oxford
- Katja Gehmlich, University of Oxford
- Michael A. Geeves, University of Kent at Canterbury
- Justin Benesch, University of Oxford
- John Sutherland, University of Cambridge
- Steven Cobb, Durham University
- Chris Tate, Medical Research Council
- Mathias Gautel, King´s College London
- Radoslav Enchev, Francis Crick Institute
- Graham Sandford, Durham University
- Ho Ying Fu, City University of Hong Kong
- Perry Eliott, University College London
Research Output
- 337 Citations
- 27 Publications
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2019
Title 19F NMR Spectroscopy Tagging and Paramagnetic Relaxation Enhancement-Based Conformation Analysis of Intrinsically Disordered Protein Complexes DOI 10.1002/cbic.201900453 Type Journal Article Author Somlyay M Journal ChemBioChem Pages 696-701 -
2018
Title 1H, 13C, 15N resonance assignment of human YAP 50–171 fragment DOI 10.1007/s12104-018-9805-8 Type Journal Article Author Feichtinger M Journal Biomolecular NMR Assignments Pages 179-182 Link Publication -
2018
Title 19 F multiple-quantum coherence NMR spectroscopy for probing protein–ligand interactions DOI 10.1039/c8ra09296f Type Journal Article Author Zawadzka-Kazimierczuk A Journal RSC Advances Pages 40687-40692 Link Publication -
2018
Title NMR Characterization of Long-Range Contacts in Intrinsically Disordered Proteins from Paramagnetic Relaxation Enhancement in 13C Direct-Detection Experiments DOI 10.1002/cbic.201800539 Type Journal Article Author Mateos B Journal ChemBioChem Pages 335-339 Link Publication -
2018
Title Exploring Protein Structure: Principles and Practice DOI 10.1007/978-3-319-76858-8 Type Book Author Skern T Publisher Springer Nature -
2018
Title Structure of a Novel Dimeric SET Domain Methyltransferase that Regulates Cell Motility DOI 10.1016/j.jmb.2018.08.017 Type Journal Article Author Pivovarova Y Journal Journal of Molecular Biology Pages 4209-4229 Link Publication -
2023
Title The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators DOI 10.1038/s41467-023-35853-1 Type Journal Article Author Appel L Journal Nature Communications Pages 166 Link Publication -
2021
Title Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar DOI 10.1371/journal.ppat.1009329 Type Journal Article Author Isch C Journal PLOS Pathogens Link Publication -
2021
Title Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar DOI 10.1101/2021.01.26.428227 Type Preprint Author Isch C Pages 2021.01.26.428227 Link Publication -
2021
Title Hyperphosphorylation of Human Osteopontin and Its Impact on Structural Dynamics and Molecular Recognition DOI 10.1021/acs.biochem.1c00050 Type Journal Article Author Mateos B Journal Biochemistry Pages 1347-1355 Link Publication -
2021
Title Structural studies of the shortest extended synaptotagmin with only two C2 domains from Trypanosoma brucei DOI 10.1016/j.isci.2021.102422 Type Journal Article Author Stepinac E Journal iScience Pages 102422 Link Publication -
2020
Title Development and characterization of specific anti-Usutu virus chicken-derived single chain variable fragment antibodies DOI 10.1002/pro.3937 Type Journal Article Author Schoenenwald A Journal Protein Science Pages 2175-2188 Link Publication -
2020
Title Dissecting distinct proteolytic activities of FMDV Lpro implicates cleavage and degradation of RLR signaling proteins, not its deISGylase/DUB activity, in type I interferon suppression DOI 10.1371/journal.ppat.1008702 Type Journal Article Author Visser L Journal PLOS Pathogens Link Publication -
2022
Title The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators DOI 10.1101/2022.02.26.482114 Type Preprint Author Appel L Pages 2022.02.26.482114 Link Publication -
2019
Title Redox Cofactor Rotates during Its Stepwise Decarboxylation: Molecular Mechanism of Conversion of Coproheme to Heme b DOI 10.1021/acscatal.9b00963 Type Journal Article Author Milazzo L Journal ACS Catalysis Pages 6766-6782 Link Publication -
2019
Title Crystal structure of the TbBILBO1 N-terminal domain reveals a ubiquitin fold with a long rigid loop for the binding of its partner DOI 10.1101/738153 Type Preprint Author Vidilaseris K Pages 738153 Link Publication -
2019
Title Crystal structure of the N-terminal domain of the trypanosome flagellar protein BILBO1 reveals a ubiquitin fold with a long structured loop for protein binding DOI 10.1074/jbc.ra119.010768 Type Journal Article Author Vidilaseris K Journal Journal of Biological Chemistry Pages 1489-1499 Link Publication -
2021
Title Cosolute modulation of protein oligomerization reactions in the homeostatic timescale DOI 10.1016/j.bpj.2021.03.020 Type Journal Article Author Mateos B Journal Biophysical Journal Pages 2067-2077 Link Publication -
2020
Title PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC DOI 10.1101/2020.02.11.943159 Type Preprint Author Appel L Pages 2020.02.11.943159 Link Publication -
2021
Title PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC DOI 10.1038/s41467-021-26360-2 Type Journal Article Author Appel L Journal Nature Communications Pages 6078 Link Publication -
2021
Title Defining substrate selection by rhinoviral 2A proteinase through its crystal structure with the inhibitor zVAM.fmk DOI 10.1016/j.virol.2021.07.008 Type Journal Article Author Deutschmann-Olek K Journal Virology Pages 128-141 Link Publication -
2018
Title Biodegradation of pentafluorosulfanyl-substituted aminophenol in Pseudomonas spp. DOI 10.1007/s10532-018-9827-z Type Journal Article Author Saccomanno M Journal Biodegradation Pages 259-270 -
2017
Title A histone-mimicking interdomain linker in a multidomain protein modulates multivalent histone binding DOI 10.1074/jbc.m117.801464 Type Journal Article Author Kostrhon S Journal Journal of Biological Chemistry Pages 17643-17657 Link Publication -
2017
Title A novel non-canonical PIP-box mediates PARG interaction with PCNA DOI 10.1093/nar/gkx604 Type Journal Article Author Kaufmann T Journal Nucleic Acids Research Pages 9741-9759 Link Publication -
2020
Title Vaccinia Virus Immunomodulator A46: Destructive Interactions with MAL and MyD88 Shown by Negative-Stain Electron Microscopy DOI 10.1016/j.str.2020.09.007 Type Journal Article Author Azar D Journal Structure Link Publication -
2020
Title Structural and antigenic investigation of Usutu virus envelope protein domain III DOI 10.1016/j.virol.2020.09.002 Type Journal Article Author Josephine Schoenenwald A Journal Virology Pages 46-57 Link Publication -
2016
Title Vaccinia Virus Immunomodulator A46: A Lipid and Protein-Binding Scaffold for Sequestering Host TIR-Domain Proteins DOI 10.1371/journal.ppat.1006079 Type Journal Article Author Fedosyuk S Journal PLOS Pathogens Link Publication