Cellular Basis of Diseases: Molecular Control of Metabolism and Inflammation
Cellular Basis of Diseases: Molecular Control of Metabolism and Inflammation
Disciplines
Biology (67%); Medical-Theoretical Sciences, Pharmacy (33%)
Keywords
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Molecular Biology,
Cell Biology,
Nutrient Acquisition,
Metabolism,
Human Disease
App. 30.000.000.000.000 (30 trillion) cells form the human body. In healthy individuals these cells work together and maintain organismal function. While it is clear that defects in cellular functions are the basis for most diseases, the underlying molecular defects are poorly understood and it is unclear how they contribute to disease. At the Medical University of Innsbruck, it is our goal to develop an interdisciplinary PhD program that addresses these questions and integrates hypothesis driven basic research with clinical research. Our major research goals are to understand cellular mechanisms of disease with a particular emphasis on (i) metabolic signaling pathways in the gastrointestinal tract and in the liver and (ii) how these pathways intersect with the reprogramming of immune cells. Our major training goals are (i) to select and mentor PhD students who are driven by curiosity and enjoy the challenge of solving complex scientific questions with passion and motivation and (ii) to generate an exciting and collaborative research environment that will educate young scientists to make discoveries that help to better understand and to finally treat diseases. Therefore, we have generated a new curriculum, that is specifically tailored to meet these goals. Each PhD project is to be guided by a tandem supervisor team always consisting of one physician scientist and one basic researcher. The organization into such research teams will result in joint goals with true interdisciplinary collaborations. Our students will be encouraged to reach out beyond their own project and experience the benefits of the collaborative attitude across our PhD program. This setup is unique in Austria. We expect that it will stimulate out of the box thinking rather than narrow focused specialization and shall prepare our PhD students for competitive positions as future scientific leaders at the international level.
With support from the FWF doc.funds program "Cellular Basis of Diseases - Molecular Control of Metabolism and Inflammation" (DOC82), the Medical University of Innsbruck (MUI) further developed the Innsbruck PhD School for Biomedical Sciences into a highly interdisciplinary research and training environment that bridges basic biomedical research and clinical science. The overarching aim of DOC82 was to advance understanding of cellular mechanisms underlying human disease and to translate these insights - on the long run - into improved diagnostic and therapeutic strategies. Research within the program focused specifically on how metabolic signaling pathways regulate nutrient transport in key organs such as the gastrointestinal tract and the liver, and how these pathways intersect with immune cell function and reprogramming. Addressing these complex questions required close collaboration between molecular biologists, clinicians, and physician scientists. A defining feature of DOC82 was its integrated training concept. Each PhD project was supervised by a tandem team consisting of a basic researcher and a physician scientist, ensuring that doctoral candidates were exposed to both fundamental mechanisms and clinical relevance. This structure fostered genuine interdisciplinary collaboration and enabled students to benefit from complementary expertise across disciplines. Beyond individual research projects, the program emphasized a collaborative research culture and structured PhD training. To our knowledge, this integrated tandem-supervision model was the first of its kind in Austria and represents an innovative approach to doctoral education. Overall, DOC82 successfully strengthened the interface between basic and clinical research at MUI. The tandem supervision concept has since been adopted in other doc.funds applications at the university and elsewhere. Importantly, DOC82it also led to the establishment of a new PhD program at MUI, "Molecular and Cellular Basis of Diseases," which unified several smaller PhD programs and uses DOC82 as a best-practice model to promote the mutual benefits of basic and clinical research in PhD training.
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
- Medizinische Universität Innsbruck
- Medizinische Universität Innsbruck
- Arthur Kaser, Medizinische Universität Innsbruck , national collaboration partner
- Sharad Kumar, Institute of Medical and Veterinary Sciences - Australia
- Andreas Strasser, The Walter and Eliza Hall Institute of Medical Research - Australia
- Martin Guilliams, Vlaams Instituut voor Biotechnologie (VIB) - Belgium
- Ernest Cutz, University of Toronto - Canada
- Moris Arnaud, Sorbonne Université - France
- Delphine Meynard, INRA - France
- Sandrine Henri, CNRS Université Aix Marseille - France
- Georg Häcker, Albert-Ludwigs-Universität Freiburg - Germany
- Michael Roden, Heinrich-Heine-Universität Düsseldorf - Germany
- Björn E. Clausen, Johannes Gutenberg Universität Mainz - Germany
- Axel A. Brakhage, Leibniz Institut für Naturstoff-Forschung und Infektionsbiologie e.V. - Germany
- Guiseppe Paglia, Academia Europea Bozen - Italy
- Floris Foijer, University of Groningen - Netherlands
- Judith Klumperman, University Medical Center Utrecht - Netherlands
- Sabine Middendorp, University Medical Center Utrecht - Netherlands
- Miranda Van Eck, Universiteit Leiden - Netherlands
- Teunis B. H. Geijtenbeek, The University of Amsterdam - Netherlands
- Hans Clevers, Universiteit Utrecht - Netherlands
- Johanna Olweus, University of Oslo - Norway
- Javier Crespo, Universidad de Cantabria - Spain
- Mats Rudling, Karolinska Institutet - Sweden
- Agneta Holmäng, University of Gothenburg - Sweden
- Matthias Peter, ETH Hönggerberg - Switzerland
- Suzie Chen, Rutgers, The State University of New Jersey - USA
- Ferric C. Fang, University of Washington - USA
- Jabri Bana, University of Chicago - USA
- Richard W. Kriwacki, St. Jude Children´s Research Hospital - USA
- Mark Donowitz, Johns Hopkins University - USA
- Scott D. Emr, Cornell University - USA
- Filip K. Swirski, Harvard Medical School - USA
- Charles N. Serhan, Harvard Medical School - USA
- Robert A. Cramer, Dartmouth-Hitchcock Medical Center - USA
- Tomas Kirchhausen, Harvard Medical School - USA
- Paul Gissen, University College London
- Snezhana Oliferenko, Francis Crick Institute
- Michael Malim, King´s College London
- Elaine M. Bignell, University of Exeter
Research Output
- 114 Citations
- 51 Publications
- 12 Methods & Materials
- 6 Datasets & models
- 10 Disseminations
- 4 Scientific Awards
- 5 Fundings
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2025
Title TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence DOI 10.1038/s44318-025-00608-9 Type Journal Article Author Kahlhofer J Journal The EMBO Journal -
2025
Title FpnA, the Aspergillus fumigatus homolog of human ferroportin, mediates resistance to nickel, cobalt and gallium but does not function in iron homeostasis. DOI 10.1038/s42003-025-07799-1 Type Journal Article Author Happacher I Journal Communications biology Pages 399 -
2025
Title Lipid juggling: Any1 scrambles membranes for endosome biogenesis DOI 10.1083/jcb.202502158 Type Journal Article Author Schwabl S Journal Journal of Cell Biology -
2025
Title Fecal Detection of Calprotectin Subunits Links Inflammatory Bowel Disease Activity With Chronicity of Intestinal Inflammation. DOI 10.1053/j.gastro.2025.08.040 Type Journal Article Author Hilbe R Journal Gastroenterology -
2025
Title Characterisation of Dsc-mediated Golgi quality control Type PhD Thesis Author Schwabl, Sinead Link Publication -
2026
Title Impact of metabolic alterations on myeloid cells in a spontaneous melanoma mouse model Type PhD Thesis Author Dieckmann, Sophie -
2026
Title Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer. DOI 10.1016/j.ccell.2025.12.003 Type Journal Article Author Marteau V Journal Cancer cell -
2026
Title BORC assemblies integrate BLOC-1 subunits to diversify endosomal trafficking functions. DOI 10.1073/pnas.2515691123 Type Journal Article Author J Amann S Journal Proceedings of the National Academy of Sciences of the United States of America -
2025
Title Loss of NR2F6 Protects from Salmonella Typhimurium Infection DOI 10.1002/advs.202404280 Type Journal Article Author Pfeifhofer-Obermair C Journal Advanced Science -
2025
Title Functional transitions of the Aspergillus fumigatus iron regulator HapX are governed by conserved domains cooperatively binding [2Fe-2S] clusters. DOI 10.1093/nar/gkaf796 Type Journal Article Author Misslinger M Journal Nucleic acids research -
2025
Title The role of ciliary function in airway epithelial defense against Pseudomonas aeruginosa. DOI 10.1007/s00430-025-00865-9 Type Journal Article Author Boeck N Journal Medical microbiology and immunology Pages 3 -
2021
Title Complement Potentiates Immune Sensing of HIV-1 and Early Type I Interferon Responses DOI 10.1128/mbio.02408-21 Type Journal Article Author Posch W Journal mBio Link Publication -
2021
Title The SZT2 Interactome Unravels New Functions of the KICSTOR Complex DOI 10.3390/cells10102711 Type Journal Article Author Cattelani C Journal Cells Pages 2711 Link Publication -
2025
Title Multi-Epitope DC Vaccines with Melanoma Antigens for Immunotherapy of Melanoma. DOI 10.3390/vaccines13040346 Type Journal Article Author Amon L Journal Vaccines -
2025
Title Metabolic stress sensing by epithelial RXR links westernization of diet with Crohn's disease. DOI 10.1016/j.cmet.2025.11.008 Type Journal Article Author Grabherr F Journal Cell metabolism -
2025
Title Regulation of NK cell development, maturation, and antitumor responses by the nuclear receptor NR2F6. DOI 10.1038/s41419-025-07407-4 Type Journal Article Author Hornsteiner F Journal Cell death & disease Pages 77 -
2025
Title The Role of NR2F6 in Innate Immunity: From Hematopoietic Stem Cells to NK Cell-Mediated Tumor Surveillance Type PhD Thesis Author Wölk, Johannes -
2025
Title Interrogating the relation of centriole number, genomic instability and cell death plasticity Type PhD Thesis Author Schapfl, Marina Link Publication -
2025
Title Iron sensing in the opportunistic pathogenic meld Aspergillus fumigatus Type PhD Thesis Author Oberegger, Simon Link Publication -
2025
Title Immune responses and vaccination impact on SARS-CoV-2 infection : dynamics and effectiveness across variants Type PhD Thesis Author Jäger, Michael Link Publication -
2024
Title The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi. DOI 10.1038/s41467-024-53676-6 Type Journal Article Author Schwabl Si Journal Nature communications Pages 9257 -
2024
Title Quantification of Macrophage Cellular Ferrous Iron (Fe2+) Content Using a Highly Specific Fluorescent Probe in a Plate Reader. DOI 10.21769/bioprotoc.4929 Type Journal Article Author Brigo N Journal Bio-protocol -
2024
Title Amplified centrosomes-more than just a threat. DOI 10.1038/s44319-024-00260-0 Type Journal Article Author Kiermaier E Journal EMBO reports Pages 4153-4167 -
2023
Title Klebsiella pneumoniae manipulates human macrophages to acquire iron. DOI 10.3389/fmicb.2023.1223113 Type Journal Article Author Grubwieser P Journal Frontiers in microbiology Pages 1223113 -
2023
Title SARS-CoV-2 activates the TLR4/MyD88 pathway in human macrophages: A possible correlation with strong pro-inflammatory responses in severe COVID-19. DOI 10.1016/j.heliyon.2023.e21893 Type Journal Article Author Hilbe R Journal Heliyon -
2023
Title Immunity of Heterologously and Homologously Boosted or Convalescent Individuals Against Omicron BA.1, BA.2, and BA.4/5 Variants. DOI 10.1093/infdis/jiad057 Type Journal Article Author Diem G Journal The Journal of infectious diseases Pages 160-168 -
2023
Title Antiviral drugs block replication of highly immune-evasive Omicron subvariants ex vivo, but fail to reduce tissue inflammation. DOI 10.1016/j.antiviral.2023.105581 Type Journal Article Author Dichtl S Journal Antiviral research Pages 105581 -
2024
Title The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi DOI 10.1101/2024.03.11.584465 Type Preprint Author Schwabl S -
2024
Title Peptide Mimics of the Cysteine-Rich Regions of HapX and SreA Bind a [2Fe-2S] Cluster In Vitro. DOI 10.1002/adbi.202300545 Type Journal Article Author Rossetto D Journal Advanced biology -
2024
Title Centrioles are frequently amplified in early B cell development but dispensable for humoral immunity. DOI 10.1038/s41467-024-53222-4 Type Journal Article Author Lomastro Gm Journal Nature communications Pages 8890 -
2024
Title Langerhans cells orchestrate apoptosis of DNA-damaged keratinocytes upon high-dose UVB skin exposure. DOI 10.1002/eji.202451020 Type Journal Article Author Ortner D Journal European journal of immunology -
2024
Title The cytosolic form of dual localized BolA family protein Bol3 is important for adaptation to iron starvation in Aspergillus fumigatus. DOI 10.1098/rsob.240033 Type Journal Article Author Misslinger M Journal Open biology Pages 240033 -
2022
Title Mechanical strain stimulates COPII-dependent secretory trafficking via Rac1 DOI 10.15252/embj.2022110596 Type Journal Article Author Phuyal S Journal The EMBO Journal Link Publication -
2022
Title A role for the nuclear receptor NR2F6 in peritoneal B cell homeostasis DOI 10.3389/fimmu.2022.845235 Type Journal Article Author Olson W Journal Frontiers in Immunology Pages 845235 Link Publication -
2022
Title Airway Epithelial Cells Differentially Adapt Their Iron Metabolism to Infection With Klebsiella pneumoniae and Escherichia coli In Vitro DOI 10.3389/fcimb.2022.875543 Type Journal Article Author Grubwieser P Journal Frontiers in Cellular and Infection Microbiology Pages 875543 Link Publication -
2022
Title The SKP2-p27 axis defines susceptibility to cell death upon CHK1 inhibition DOI 10.1002/1878-0261.13264 Type Journal Article Author Lohmüller M Journal Molecular Oncology Pages 2771-2787 Link Publication -
2022
Title Protein quality control at the Golgi DOI 10.1016/j.ceb.2022.02.008 Type Journal Article Author Schwabl S Journal Current Opinion in Cell Biology Pages 102074 Link Publication -
2021
Title P80 Natural Essence Exerts Efficient Anti-HIV-1- as Well as Adjuvant Effects in DCs DOI 10.3390/vaccines9090976 Type Journal Article Author Zaderer V Journal Vaccines Pages 976 Link Publication -
2023
Title Vaccination and Omicron BA.1/BA.2 Convalescence Enhance Systemic but Not Mucosal Immunity against BA.4/5. DOI 10.1128/spectrum.05163-22 Type Journal Article Author Diem G Journal Microbiology spectrum -
2023
Title Iron at the Respiratory Host-Pathogen Interface Type PhD Thesis Author Grubwieser, Philipp -
2023
Title Advances in Ferritin Physiology and Possible Implications in Bacterial Infection. DOI 10.3390/ijms24054659 Type Journal Article Author Gehrer Cm Journal International journal of molecular sciences -
2023
Title Continuous Measurement of Reactive Oxygen Species Formation in Bacteria-infected Bone Marrow-derived Macrophages Using a Fluorescence Plate Reader. DOI 10.21769/bioprotoc.4604 Type Journal Article Author Brigo N Journal Bio-protocol -
2024
Title Human airway epithelium controls Pseudomonas aeruginosa infection via inducible nitric oxide synthase. DOI 10.3389/fimmu.2024.1508727 Type Journal Article Author Böck N Journal Frontiers in immunology Pages 1508727 -
2024
Title Tumor-targeted therapy with BRAF-inhibitor recruits activated dendritic cells to promote tumor immunity in melanoma. DOI 10.1136/jitc-2023-008606 Type Journal Article Author Hornsteiner F Journal Journal for immunotherapy of cancer -
2024
Title Extra centrosomes delay DNA damage-driven tumorigenesis. DOI 10.1126/sciadv.adk0564 Type Journal Article Author Braun Vz Journal Science advances -
2023
Title Timing of Interleukin-4 Stimulation of Macrophages Determines Their Anti-Microbial Activity during Infection with Salmonella enterica Serovar Typhimurium. DOI 10.3390/cells12081164 Type Journal Article Author Brigo N Journal Cells -
2023
Title EpoR Activation Stimulates Erythroid Precursor Proliferation by Inducing Phosphorylation of Tyrosine-88 of the CDK-Inhibitor p27Kip1. DOI 10.3390/cells12131704 Type Journal Article Author Ben-Califa N Journal Cells -
2023
Title Undiagnosed chronic respiratory disorders in symptomatic patients with initially suspected and excluded coronary artery disease: insights from a prospective pilot study. DOI 10.3389/fmed.2023.1181831 Type Journal Article Author Beyer C Journal Frontiers in medicine Pages 1181831 -
2022
Title Guidelines for DC preparation and flow cytometry analysis of mouse nonlymphoid tissues DOI 10.1002/eji.202249819 Type Journal Article Author Probst H Journal European Journal of Immunology Link Publication -
2022
Title Serum Neutralization Against SARS-CoV-2 Variants Is Heterogenic and Depends on Vaccination Regimen DOI 10.1093/infdis/jiac432 Type Journal Article Author Jäger M Journal The Journal of Infectious Diseases Pages 528-532 Link Publication -
2022
Title The human LAT1–4F2hc (SLC7A5–SLC3A2) transporter complex: Physiological and pathophysiological implications DOI 10.1111/bcpt.13821 Type Journal Article Author Kahlhofer J Journal Basic & Clinical Pharmacology & Toxicology Pages 459-472 Link Publication
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2022
Title Tools for interactome studies Type Cell line Public Access -
2021
Title Establishment and optimization of immune competent 3D respiratory and mucosal models Type Technology assay or reagent Public Access -
2021
Title Fatty acid uptake assay Type Technology assay or reagent Public Access -
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Title Genetically altered mice lines Type Biological samples Public Access -
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Link
Title Metabolics & Lipidomics Type Technology assay or reagent Public Access Link Link -
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Title Establishment of a human airway organoid infection model Type Cell line Public Access -
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Title co-culture system combining HepG2 hepatocytes with LX-2 hepatic stellate cells Type Cell line Public Access -
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Title Genetically edited fungal, mice and human cell lines Type Cell line Public Access -
2025
Title Generation of fungal mutants followed by phenotypic, biochemical and molecular analyses. Type Biological samples Public Access -
2024
Title Genetically modified PIDDosome mutants carrying a Centrin-EYFP reporter Type Biological samples Public Access -
2024
Title In-vitro measurement of ferrous iron content in cellular infection models Type Technology assay or reagent Public Access -
2023
Title In-vitro measurement of oxidative stress in cellular infection models Type Technology assay or reagent Public Access
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2025
Link
Title Data from "Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer" DOI 10.5281/zenodo.16631518 Type Database/Collection of data Public Access Link Link -
2025
Link
Title Regulation of NK cell development, maturation, and antitumor responses by the nuclear receptor NR2F6 Type Database/Collection of data Public Access Link Link -
2025
Link
Title Loss of NR2F6 reduces tissue-resident macrophages and protects from Salmonella typhimurium infection Type Database/Collection of data Public Access Link Link -
2024
Link
Title Molecular Dynamics Simulation_1 from: The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi (doi: 10.1038/s41467-024-53676-6) Type Database/Collection of data Public Access Link Link -
2024
Link
Title Molecular Dynamics Simulation_2 from: The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi (doi: 10.1038/s41467-024-53676-6) Type Database/Collection of data Public Access Link Link -
2024
Link
Title Proteome data from: The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi (https://doi.org/10.1038/s41467-024-53676-6) Type Database/Collection of data Public Access Link Link
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2023
Title Austrian 3R Days 2023 Type Participation in an activity, workshop or similar -
2023
Title European Conference on Fungal Genetics 2023 Type A formal working group, expert panel or dialogue -
2026
Link
Title Austrian 3R Days 2026 Type A formal working group, expert panel or dialogue Link Link -
2024
Title Gregor Mendel Day Type Participation in an activity, workshop or similar -
2023
Title Lange Nacht der Forschung Type Participation in an open day or visit at my research institution -
2022
Title The faculty participated in the Open Lab Day at the Medical University of Innsbruck Type Participation in an activity, workshop or similar -
2022
Title I participated in the Open Lab Day at the Medical University of Innsbruck Type Participation in an activity, workshop or similar -
2025
Link
Title ÖGMBT Workshop 2025: The Evolving Landscape of Cell Culture: Advancing Technologies and Future Prospects: Type A talk or presentation Link Link -
2024
Title Gregor Mendel Day Type Participation in an activity, workshop or similar -
2019
Title The faculty contributed to the Sience Day at the Medical University of Innsbruck Type A talk or presentation
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2024
Title European Society of Clinical Microbiology and Infectious Diseases Congress 2024 Type Research prize Level of Recognition Continental/International -
2024
Title PhD life science meeting Best Presentation Award Type Poster/abstract prize Level of Recognition Regional (any country) -
2023
Title • Austrian Infectious Disease Congress 2023 (ÖIK) Type Poster/abstract prize Level of Recognition National (any country) -
2023
Title LC Meeting 2023, Paris: EFIS-EUROPEAN JOURNAL OF IMMUNOLOGY (EJI) Type Poster/abstract prize Level of Recognition Continental/International
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2022
Title Regulation of phospholipid remodeling in mitochondria Type Research grant (including intramural programme) Start of Funding 2022 Funder Austrian Science Fund (FWF) -
2023
Title Organelle proteostasis in cellular quiescence and growth Type Research grant (including intramural programme) DOI 10.55776/fg20 Start of Funding 2023 Funder Austrian Science Fund (FWF) -
2020
Title HIV-C escapes Restriction not Sensing in DCs Type Research grant (including intramural programme) Start of Funding 2020 Funder Austrian Science Fund (FWF) -
2022
Title Control of amino acid transporter endocytosis & degradation Type Research grant (including intramural programme) Start of Funding 2022 Funder Austrian Science Fund (FWF) -
2021
Title Organelle specific rules for the self-assembly of ESCRT-III heteropolymers Type Research grant (including intramural programme) Start of Funding 2021 Funder Austrian Science Fund (FWF)