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Online Connectivity Estimation and Neurofeedback with TMS

Online Connectivity Estimation and Neurofeedback with TMS

Daniel Baumgarten (ORCID: 0000-0001-6109-3368)
  • Grant DOI 10.55776/I3790
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start October 1, 2018
  • End September 30, 2022
  • Funding amount € 205,115
  • Project website

DACH: Österreich - Deutschland - Schweiz

Disciplines

Clinical Medicine (20%); Medical Engineering (80%)

Keywords

    Algorithmen für Oline-Quellenlokalisation, Algorithmen für Online-Konnektivitätsschätzung, Magnetoenzephalografie, Elektroenzephalographie, Transkraniale Magnetfeldstimulation

Abstract Final report

Human capabilities are characterized by fast and parallel processing of information across local and long-range brain networks. Understanding the dynamic neural processing underlying our capabilities requires an electrophysiological technique capable of identifying the networks and their functions with a millisecond resolution. Today, electroencephalography (EEG) and magnetoencephalography (MEG) are the only noninvasive techniques that can estimate the neuronal activity with such resolution. On the contrary, techniques such as (functional) Magnetic Resonance Imaging (MRI/fMRI) measure comparatively slow, but with a much higher spatial resolution. Regarding the proposed project with the title Online Neuronal Connectivity Estimation and Neurofeedback with Transcranial Magnetic Stimulation we will establish new real-time methods to analyze and process MEG/EEG data for subsequent cortical stimulation scenarios. The overarching objective is to develop real-time computational tools for advancing our understanding of electrophysiological functions of neuronal networks and cortical stimulation in the human brain in health and disease. During the project methods for estimating functional connectivity in real-time MEG/EEG scenarios will be established. Furthermore, ways to integrate Transcranial Magnetic Stimulation (TMS) into a real-time scenario will be investigated. Such real-time scenarios can be found in neurofeedback and Brain Computer Interface (BCI) research. Both fields address data processing pipelines, which present specific stimuli to the subject, measure the corresponding brain activity, process the measured data in real-time and readjust the upcoming stimulus. This way the subject is part of a close-loop data processing pipeline with a direct feedback. This is for example useful when learning to regain motor function during stroke rehabilitation treatment. The proposed work will advance knowledge regarding the network activity in human with a millisecond resolution and thus contribute to one of the promising research field of our time, the decoding of the human brain.

Electroencephalography (EEG) and magnetoencephalographie (MEG) offer the possibility to measure and localize brain activity with a unique temporal resolution. The online or real-time processing of EEG and MEG data allows to not only inspect the data during a measurement but to dynamically react to the measurement results, e.g., by adapting the experimental design, delivering targeted brain stimulation or giving neurofeedback to the subject. Thereby, online processing can be used in a variety of applications such as brain-computer interfaces, neurological rehabilitation or to design novel experimental paradigms. Within the research project "ONCE-TMS / Online Neuronal Connectivity Estimation and Neurofeedback with Transcranial Magnetic Stimulation" algorithms that allow for the online estimation of EEG/MEG functional connectivity in large all-to-all networks were derived and implemented. In combination with algorithms enabling the online estimation of the brain sources underlying EEG/MEG, this allows the online analysis of the complex interplay of different brain regions. Being able to perform complex processing tasks such as source analysis or connectivity analysis online has the potential to facilitate important progress in all applications of EEG/MEG online processing. Within this research project, we laid ground for the use of online EEG/MEG connectivity analysis in combination with transcranial magnetic brain stimulation (TMS) and neurofeedback applications. This allows establishing closed-loop applications, in which the stimulation or neurofeedback is determined based on the measured EEG/MEG signal and can then be altered based on the measured effect of the stimulus. Besides the efficient implementation of EEG/MEG connectivity analysis, this required the implementation of various signal processing algorithms such as frequency analysis or common spatial patterns (CSP). As main outcome of this research project, we were for the first time able to demonstrate the online analysis of large all-to-all functional connectivity networks, derived a novel algorithm for the computation of CSPs, and demonstrated a closed-loop pipeline for EEG/MEG-based TMS in MNE Scan. Besides, we were able to demonstrate that basic EEG/MEG online processing with MNE Scan can also be performed on mobile and highly affordable single-board computers, such as the Raspberry Pi. All implementations within this research project were performed in the open-source C++ package MNE Scan and are available at https://mne-cpp.github.io/. This allows researchers to directly apply the results from this research project to perform closed-loop TMS and neurofeedback experiments.

Research institution(s)
  • Priv.-Univ. für Gesundheitswissenschaften, Medizinische Informatik und Technik - 100%
International project participants
  • Carsten Klingner, Friedrich Schiller Universität Jena - Germany
  • Jens Haueisen, Technische Universität Ilmenau - Germany
  • Yoshio Okada, Children´s Hospital Boston - USA
  • Matti Hämäläinen, Harvard Medical School - USA

Research Output

  • 299 Citations
  • 14 Publications
  • 2 Software
  • 11 Disseminations
  • 1 Scientific Awards
  • 1 Fundings
Publications
  • 2024
    Title Global sensitivity of EEG source analysis to tissue conductivity uncertainties.
    DOI 10.3389/fnhum.2024.1335212
    Type Journal Article
    Author Vorwerk J
    Journal Frontiers in human neuroscience
    Pages 1335212
  • 2021
    Title Characterization of the Somatosensory System
    DOI 10.1007/978-1-0716-1213-2_11
    Type Book Chapter
    Author Wolters C
    Publisher Springer Nature
    Pages 153-169
  • 2021
    Title DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
    DOI 10.1371/journal.pone.0252431
    Type Journal Article
    Author Schrader S
    Journal PLOS ONE
    Link Publication
  • 2020
    Title Comparison of three types of laser optical disdrometers under natural rainfall conditions
    DOI 10.1080/02626667.2019.1709641
    Type Journal Article
    Author Johannsen L
    Journal Hydrological Sciences Journal
    Pages 524-535
    Link Publication
  • 2023
    Title Online functional connectivity analysis of large all-to-all networks
    DOI 10.48550/arxiv.2303.03279
    Type Preprint
    Author Dong J
    Link Publication
  • 2023
    Title Scatter-based common spatial patterns -- a unified spatial filtering framework
    DOI 10.48550/arxiv.2303.06019
    Type Preprint
    Author Dong J
    Link Publication
  • 2022
    Title DUNEuro-A software toolbox for forward modeling in bioelectromagnetism
    DOI 10.17879/42029460723
    Type Other
    Author Schrader S
    Link Publication
  • 2019
    Title Influence of Head Tissue Conductivity Uncertainties on EEG Dipole Reconstruction
    DOI 10.3389/fnins.2019.00531
    Type Journal Article
    Author Vorwerk J
    Journal Frontiers in Neuroscience
    Pages 531
    Link Publication
  • 2019
    Title DUNEuro -- A software toolbox for forward modeling in bioelectromagnetism
    DOI 10.48550/arxiv.1901.02874
    Type Preprint
    Author Schrader S
  • 2022
    Title Hrip1 enhances tomato resistance to yellow leaf curl virus by manipulating the phenylpropanoid biosynthesis and plant hormone pathway
    DOI 10.1007/s13205-022-03426-6
    Type Journal Article
    Author Dong Y
    Journal 3 Biotech
    Pages 11
    Link Publication
  • 2019
    Title A retrospective evaluation of automated optimization of deep brain stimulation parameters
    DOI 10.1088/1741-2552/ab35b1
    Type Journal Article
    Author Vorwerk J
    Journal Journal of Neural Engineering
    Pages 064002
    Link Publication
  • 2019
    Title The multipole approach for EEG forward modeling using the finite element method
    DOI 10.1016/j.neuroimage.2019.116039
    Type Journal Article
    Author Vorwerk J
    Journal NeuroImage
    Pages 116039
  • 2019
    Title Abstract #160: A Retrospective Evaluation of Automated Optimization of Deep Brain Stimulation Settings
    DOI 10.1016/j.brs.2018.12.167
    Type Journal Article
    Author Vorwerk J
    Journal Brain Stimulation
  • 2020
    Title A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources
    DOI 10.1002/hbm.25272
    Type Journal Article
    Author Piastra M
    Journal Human Brain Mapping
    Pages 978-992
    Link Publication
Software
  • 2021 Link
    Title DUNEuro
    Link Link
  • 2017 Link
    Title Mne-Tools/Mne-Cpp: Mne-Cpp V1.0.0-Beta 2.0
    DOI 10.5281/zenodo.265697
    Link Link
Disseminations
  • 2020
    Title Kiel 2020
    Type A talk or presentation
  • 2019
    Title Aachen 2019
    Type A talk or presentation
  • 2019
    Title BaCI DBS (2019)
    Type A talk or presentation
  • 2019
    Title BaCI TMS (2019)
    Type A talk or presentation
  • 2021
    Title DGBMT 2021
    Type A talk or presentation
  • 2020
    Title Lange Nacht der Forschung (2020)
    Type Participation in an open day or visit at my research institution
  • 2020
    Title Biosignale 2020
    Type Participation in an activity, workshop or similar
  • 2019
    Title IBB 2019
    Type A talk or presentation
  • 2020
    Title DGBMT 2020
    Type A talk or presentation
  • 2022
    Title BMT 2022
    Type Participation in an activity, workshop or similar
  • 2022
    Title Lange Nacht der Forschung (2022)
    Type Participation in an open day or visit at my research institution
Scientific Awards
  • 2022
    Title Frontiers in Human Neuroscience
    Type Appointed as the editor/advisor to a journal or book series
    Level of Recognition Continental/International
Fundings
  • 2022
    Title Uncertainty Quantification for EEG/MEG Source Analysis
    Type Research grant (including intramural programme)
    Start of Funding 2022
    Funder Austrian Science Fund (FWF)

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