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Larvalbrain 2.0

Larvalbrain 2.0

Katja Bühler (ORCID: 0000-0002-0362-7998)
  • Grant DOI 10.55776/I4836
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start October 1, 2020
  • End September 30, 2025
  • Funding amount € 387,637

DACH: Österreich - Deutschland - Schweiz

Disciplines

Computer Sciences (50%); Medical-Theoretical Sciences, Pharmacy (50%)

Keywords

    Drosophila Melanogaster Larval Brain, Neuron Connectivity, Expression Patterns, Brain Atlas, Open Access Data Base, Connectome

Abstract

The ongoing rapid development of novel genetic tools as well as imaging and simulation technologies makes neuroscience an increasingly data-intensive research discipline with respect to data acquisition, data integration, interpretation and design. However, these elements often form a closed loop in a research workflow. On the other hand, this process in itself generates data, which has to be related to its particular approach. However, even more importantly, the newly acquired data needs to be linked and related to existing data resources, since a single experiment or piece of data usually reveals only a tiny fraction of the overall picture. Accordingly, in this project we will establish Larvalbrain2.0 as a dynamic multi-scale multi-level atlas and data collection of structural, molecular, physiological and behavioral results of Drosophila melanogaster larvae. The Drosophila larva seems to be particularly suited for such an approach due to its simplistic brain that consists of only about 10.000 neurons, which is the subject of several major approaches to reconstruct each cell and even its entire connectome at the light and electron microscopy leve l. At the same time, based on the integration of new technologies for monitoring and manipulating neuronal activity, significant progress was made to identify brain mechanisms and circuits underlying the selection of appropriate behaviors across different resolution levels and data spaces. In detail, we will establish Larvalbrain2.0 to study larval choice behavior, feeding and learning and memory depending on salt perception and processing. The project comprises four cornerstones: 1) The integration of an improved version of the LM standard brain atlas with the EM connector. 2) Integrating all available information on genetic driver-line expression patterns into Larvalbrain2.0. 3) Building Larvalbrain2.0, a collaborative data and research platform that integrates structural, behavioral, molecular and physiological data from the larval brain of Drosophila. 4) The integration of molecular, behavioral and physiological data sets to establish a first larval brain network model for salt information processing.

Research institution(s)
  • VRVis Zentrum für Virtual Reality und Visualisierung - 100%
International project participants
  • Dorit Merhof, Rheinisch-Westfälische Technische Hochschule - Germany
  • Andreas Thum, Universität Leipzig - Germany

Research Output

  • 8 Citations
  • 7 Publications
  • 2 Datasets & models
  • 4 Disseminations
Publications
  • 2024
    Title Visual Analytics für Deep Learning mit Graphen: Case Study Neuronen Clustering
    DOI 10.34726/hss.2024.112190
    Type Other
    Author Pichler M
    Link Publication
  • 2024
    Title SPX: A Versatile Spatial Indexing Framework
    DOI 10.34726/hss.2024.119688
    Type Other
    Author Töpfer M
    Link Publication
  • 2025
    Title Circuit Mining in Transcriptomics Data
    DOI 10.1101/2025.04.09.647750
    Type Preprint
    Author Peherstorfer T
  • 2025
    Title Circuit Mining in Transcriptomics Data.
    DOI 10.1109/mcg.2025.3594562
    Type Journal Article
    Author Peherstorfer T
    Journal IEEE computer graphics and applications
    Pages 35-48
  • 2024
    Title BrainTACO: an explorable multi-scale multi-modal brain transcriptomic and connectivity data resource
    DOI 10.1038/s42003-024-06355-7
    Type Journal Article
    Author Ganglberger F
    Journal Communications Biology
  • 2022
    Title Spatial-data-driven layouting for brain network visualization
    DOI 10.1016/j.cag.2022.04.014
    Type Journal Article
    Author Ganglberger F
    Journal Computers & Graphics
    Pages 12-24
    Link Publication
  • 2022
    Title Anatomy-Driven Layouting for Brain Network Visualization
    DOI 10.34726/hss.2022.78887
    Type Other
    Author Wißmann M
    Link Publication
Datasets & models
  • 2022
    Title An algorithm for spatial-data-driven layouting for brain network visualization
    DOI 10.1016/j.cag.2022.04.014
    Type Computer model/algorithm
    Public Access
  • 2025 Link
    Title An interactive tool for circuit mining in transcriptomics data
    DOI 10.1109/mcg.2025.3594562
    Type Computer model/algorithm
    Public Access
    Link Link
Disseminations
  • 2022
    Title Several Guest Lectures
    Type A talk or presentation
  • 2025
    Title EurobioImaging Data Community Days
    Type A formal working group, expert panel or dialogue
  • 2022
    Title Demos during VRVis Open House, VRVis Visual Computing Trends and IEEE Visualization Lab Visits and online presentations addressing the general public
    Type Participation in an open day or visit at my research institution
  • 2022
    Title Presentation to and discussion with colleagues
    Type A talk or presentation

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