Pseudocontact chemical shifts in RNA via LCT
Pseudocontact chemical shifts in RNA via LCT
DACH: Österreich - Deutschland - Schweiz
Disciplines
Chemistry (100%)
Keywords
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RNA,
Lanthanide Chelate Tagging,
NMR,
Pseudocontact Shifts,
Residual Dipolar Coupling
The proposed research aims at the establishment of a novel approach to advance the structural biology of nucleic acids by nuclear magnetic resonance (NMR) spectroscopy. In collaboration with the group of Daniel Häussinger at the University of Basel we want to develop a method to selectively attach so called DOTA tags to ribonucleic acids (RNA). In these DOTA tags rare earth metal ions, such as thulium or dysprosium, are immobilized and the attachment of these modifiers unlocks an important source of information the pseudo contact shift (PCS) - to address the high resolution 3D structure but also the dynamics in RNA. We will combine state of the art chemical synthesis and NMR spectroscopy to further close the methodological gap between protein and nucleic acid magnetic resonance.
- Universität Innsbruck - 100%
- Daniel Häussinger, Universität Basel - Switzerland
Research Output
- 72 Citations
- 10 Publications
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2025
Title Methylation of Cytidine 1407 Increases the Lifetimes of the A-Site Ground and Excited States of E. coli 16S Ribosomal RNA DOI 10.1021/jacs.5c06523 Type Journal Article Author Hilber S Journal Journal of the American Chemical Society Pages 26097-26101 Link Publication -
2025
Title Advances in Isotope Labeling for Solution Nucleic Acid Nuclear Magnetic Resonance Spectroscopy DOI 10.1002/cplu.202400752 Type Journal Article Author Hilber S Journal ChemPlusChem Link Publication -
2022
Title Rapid and reliable RNA resonance assignment by combining chemical and enzymatic stable isotope labeling DOI 10.1016/j.jmro.2022.100077 Type Journal Article Author Klingler D Journal Journal of Magnetic Resonance Open Pages 100077 Link Publication -
2024
Title Phase Separation Modulates the Thermodynamics and Kinetics of RNA Hybridization DOI 10.1021/jacs.4c06530 Type Journal Article Author Rangadurai A Journal Journal of the American Chemical Society Pages 19686-19689 -
2024
Title A delayed decoupling methyl-TROSY pulse sequence for atomic resolution studies of folded proteins and RNAs in condensates DOI 10.1016/j.jmr.2024.107667 Type Journal Article Author Ahmed R Journal Journal of Magnetic Resonance Pages 107667 -
2024
Title Resolving the intricate binding of neomycin B to multiple binding motifs of a neomycin-sensing riboswitch aptamer by native top-down mass spectrometry and NMR spectroscopy DOI 10.1093/nar/gkae224 Type Journal Article Author Heel S Journal Nucleic Acids Research Pages 4691-4701 Link Publication -
2023
Title 19F NMR Untersuchung des Konformationsaustauschs mehrerer Zustände im synthetischen Neomycin-bindenden Riboschalter DOI 10.1002/ange.202218064 Type Journal Article Author Overbeck J Journal Angewandte Chemie Link Publication -
2023
Title Multi-Site Conformational Exchange in the Synthetic Neomycin-Sensing Riboswitch Studied by 19F NMR DOI 10.1002/anie.202218064 Type Journal Article Author Overbeck J Journal Angewandte Chemie International Edition Link Publication -
2023
Title Advances in RNA Labeling with Trifluoromethyl Groups DOI 10.1002/chem.202302220 Type Journal Article Author Eichler C Journal Chemistry – A European Journal Link Publication -
2024
Title Efficient Synthetic Access to Stable Isotope Labelled Pseudouridine Phosphoramidites for RNA NMR Spectroscopy DOI 10.1002/chem.202401193 Type Journal Article Author Glänzer D Journal Chemistry – A European Journal Link Publication