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Pseudocontact chemical shifts in RNA via LCT

Pseudocontact chemical shifts in RNA via LCT

Christoph Kreutz (ORCID: 0000-0002-7018-9326)
  • Grant DOI 10.55776/I5287
  • Funding program Principal Investigator Projects International
  • Status ongoing
  • Start January 1, 2022
  • End December 31, 2025
  • Funding amount € 460,152

DACH: Österreich - Deutschland - Schweiz

Disciplines

Chemistry (100%)

Keywords

    RNA, Lanthanide Chelate Tagging, NMR, Pseudocontact Shifts, Residual Dipolar Coupling

Abstract

The proposed research aims at the establishment of a novel approach to advance the structural biology of nucleic acids by nuclear magnetic resonance (NMR) spectroscopy. In collaboration with the group of Daniel Häussinger at the University of Basel we want to develop a method to selectively attach so called DOTA tags to ribonucleic acids (RNA). In these DOTA tags rare earth metal ions, such as thulium or dysprosium, are immobilized and the attachment of these modifiers unlocks an important source of information the pseudo contact shift (PCS) - to address the high resolution 3D structure but also the dynamics in RNA. We will combine state of the art chemical synthesis and NMR spectroscopy to further close the methodological gap between protein and nucleic acid magnetic resonance.

Research institution(s)
  • Universität Innsbruck - 100%
International project participants
  • Daniel Häussinger, Universität Basel - Switzerland

Research Output

  • 72 Citations
  • 10 Publications
Publications
  • 2025
    Title Methylation of Cytidine 1407 Increases the Lifetimes of the A-Site Ground and Excited States of E. coli 16S Ribosomal RNA
    DOI 10.1021/jacs.5c06523
    Type Journal Article
    Author Hilber S
    Journal Journal of the American Chemical Society
    Pages 26097-26101
    Link Publication
  • 2025
    Title Advances in Isotope Labeling for Solution Nucleic Acid Nuclear Magnetic Resonance Spectroscopy
    DOI 10.1002/cplu.202400752
    Type Journal Article
    Author Hilber S
    Journal ChemPlusChem
    Link Publication
  • 2022
    Title Rapid and reliable RNA resonance assignment by combining chemical and enzymatic stable isotope labeling
    DOI 10.1016/j.jmro.2022.100077
    Type Journal Article
    Author Klingler D
    Journal Journal of Magnetic Resonance Open
    Pages 100077
    Link Publication
  • 2024
    Title Phase Separation Modulates the Thermodynamics and Kinetics of RNA Hybridization
    DOI 10.1021/jacs.4c06530
    Type Journal Article
    Author Rangadurai A
    Journal Journal of the American Chemical Society
    Pages 19686-19689
  • 2024
    Title A delayed decoupling methyl-TROSY pulse sequence for atomic resolution studies of folded proteins and RNAs in condensates
    DOI 10.1016/j.jmr.2024.107667
    Type Journal Article
    Author Ahmed R
    Journal Journal of Magnetic Resonance
    Pages 107667
  • 2024
    Title Resolving the intricate binding of neomycin B to multiple binding motifs of a neomycin-sensing riboswitch aptamer by native top-down mass spectrometry and NMR spectroscopy
    DOI 10.1093/nar/gkae224
    Type Journal Article
    Author Heel S
    Journal Nucleic Acids Research
    Pages 4691-4701
    Link Publication
  • 2023
    Title 19F NMR Untersuchung des Konformationsaustauschs mehrerer Zustände im synthetischen Neomycin-bindenden Riboschalter
    DOI 10.1002/ange.202218064
    Type Journal Article
    Author Overbeck J
    Journal Angewandte Chemie
    Link Publication
  • 2023
    Title Multi-Site Conformational Exchange in the Synthetic Neomycin-Sensing Riboswitch Studied by 19F NMR
    DOI 10.1002/anie.202218064
    Type Journal Article
    Author Overbeck J
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2023
    Title Advances in RNA Labeling with Trifluoromethyl Groups
    DOI 10.1002/chem.202302220
    Type Journal Article
    Author Eichler C
    Journal Chemistry – A European Journal
    Link Publication
  • 2024
    Title Efficient Synthetic Access to Stable Isotope Labelled Pseudouridine Phosphoramidites for RNA NMR Spectroscopy
    DOI 10.1002/chem.202401193
    Type Journal Article
    Author Glänzer D
    Journal Chemistry – A European Journal
    Link Publication

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