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Dysregulation of mitochondrial protein biosynthesis by LRRK2

Dysregulation of mitochondrial protein biosynthesis by LRRK2

Andreas Kohler (ORCID: 0000-0001-6571-2162)
  • Grant DOI 10.55776/J4398
  • Funding program Erwin Schrödinger
  • Status ended
  • Start December 1, 2019
  • End August 31, 2023
  • Funding amount € 163,730

Disciplines

Biology (10%); Medical-Theoretical Sciences, Pharmacy (90%)

Keywords

    Neurodegeneration, Yeast model, Mitochondrial protein biosynthesis, Parkinson's disease, Leucine-rich repeat kinase 2 (LRRK2), Mitochondria

Abstract Final report

Mitochondria are important components of a cell with various physiological and vital tasks, including energy production and maintenance of a cells metabolism. While the majority of the genetic information is located within a subpart of the cell called nucleus, one very special feature of mitochondria is that they possess their own genetic material. In order to build mitochondrial protein complexes, which are important for energy production, both the genetic code in the nucleus and in mitochondria must be correctly read and translated into proteins, which is called protein biosynthesis. This complex translation process is tightly regulated and highly coordinated between the nucleus and mitochondria. Furthermore, proteins encoded by the genetic material in the nucleus must be subsequently transported into mitochondria. Although a dysregulation of all these processes and their coordinated interplay can lead to various human diseases, the underlying mechanisms are incompletely understood. In this project, we are investigating the role of a human protein called leucin-rich repeat kinase 2 (LRRK2) on the process of mitochondrial protein biosynthesis. LRRK2 is leadingly involved in Parkinsons disease, a disorder of the nervous system, resulting in movement disabilities, but also in dementia and other psychiatric symptoms. Thereby, we aim to elucidate the mechanisms by which LRRK2 affects mitochondrial protein biosynthesis and its interplay with processes in the nucleus. Furthermore, we will investigate how these alterations cause cell death as a major event triggering Parkinsons disease. Of note, we analyse LRRK2-mediated disturbances throughout aging in order to understand how age as a decisive risk factor for Parkinsons disease contributes to LRRK2-caused changes.

Mitochondria are vital parts of our cells that play a major role in energy conversion. Thereby, they utilize oxygen from the air we breathe and metabolites derived from our food to produce ATP, the main form of energy used in our cells. This makes mitochondria the foundation of all oxygen-dependent life on Earth. Interestingly, mitochondria originated as separate organisms and were incorporated into our cells during evolution. Thus, they contain their own DNA, which codes for proteins essential for energy conversion. To ensure that proteins function properly, they are monitored by complex systems in a process known as protein quality control (PQC). PQC ensures accurate protein production, proper transport and placement within the cell, correct folding into functional proteins, and, if necessary, the breakdown of damaged or surplus proteins. This is particularly important for mitochondria, as their oxidative environment can damage proteins and disrupt cellular functions. Indeed, the accumulation of such damage is associated with ageing and can result in age-related diseases, including neurodegenerative disorders like Parkinson's disease. However, many aspects of mitochondrial PQC are still unknown, especially the PQC of proteins encoded by mitochondrial DNA remains enigmatic. In this project, we identified important molecular machines that monitor the production of mitochondrially-encoded proteins. Large multiprotein complexes interact with newly synthesised mitochondrially-encoded proteins early after their production and validate whether these nascent proteins can, in turn, interact with respective helper proteins, so-called assembly factors. If the interaction between all these factors is fully functional, the nascent mitochondrially-encoded proteins can proceed into the assembly of protein complexes important for energy conversion. If this interaction is not successful (e.g., because a nascent mitochondrially-encoded protein was not correctly produced), the newly synthesized protein gets degraded by a protease within the identified PQC machine. Our results provide important first insights into the molecular processes required for PQC of mitochondrially-encoded proteins. We will continue our work to decipher further molecular details of these processes and validate how these PQC mechanisms decline during ageing, potentially resulting in Parkinson's disease. With this ongoing work, we aim to lay the foundation for new therapeutic approaches against age-related cellular decline and neurodegenerative processes.

Research institution(s)
  • Universität Graz - 100%
  • University of Stockholm - 100%
International project participants
  • Henrietta Nielsen, University of Stockholm - Sweden

Research Output

  • 293 Citations
  • 16 Publications
  • 1 Methods & Materials
  • 1 Scientific Awards
Publications
  • 2024
    Title Nuclear Hsp104 safeguards the dormant translation machinery during quiescence.
    DOI 10.1038/s41467-023-44538-8
    Type Journal Article
    Author Kohler A
    Journal Nature communications
    Pages 315
  • 2021
    Title The [PSI+] prion and HSP104 modulate cytochrome c oxidase deficiency caused by deletion of COX12
    DOI 10.1101/2021.10.08.463630
    Type Preprint
    Author Saini P
    Pages 2021.10.08.463630
    Link Publication
  • 2022
    Title The [PSI+] prion modulates cytochrome c oxidase deficiency caused by deletion of COX12
    DOI 10.1091/mbc.e21-10-0499
    Type Journal Article
    Author Saini P
    Journal Molecular Biology of the Cell
    Link Publication
  • 2022
    Title Multi-omic integration by machine learning (MIMaL)
    DOI 10.1093/bioinformatics/btac631
    Type Journal Article
    Author Dickinson Q
    Journal Bioinformatics
    Pages 4908-4918
    Link Publication
  • 2021
    Title Phosphate Restriction Promotes Longevity via Activation of Autophagy and the Multivesicular Body Pathway
    DOI 10.3390/cells10113161
    Type Journal Article
    Author Ebrahimi M
    Journal Cells
    Pages 3161
    Link Publication
  • 2021
    Title Ca2+ administration prevents a-synuclein proteotoxicity by stimulating calcineurin-dependent lysosomal proteolysis
    DOI 10.1371/journal.pgen.1009911
    Type Journal Article
    Author Habernig L
    Journal PLOS Genetics
    Link Publication
  • 2020
    Title Apitoxin and Its Components against Cancer, Neurodegeneration and Rheumatoid Arthritis: Limitations and Possibilities
    DOI 10.3390/toxins12020066
    Type Journal Article
    Author Aufschnaiter A
    Journal Toxins
    Pages 66
    Link Publication
  • 2020
    Title Closing the Gap: Membrane Contact Sites in the Regulation of Autophagy
    DOI 10.3390/cells9051184
    Type Journal Article
    Author Kohler V
    Journal Cells
    Pages 1184
    Link Publication
  • 2022
    Title The [PSI+] prion and HSP104 modulate cytochrome c oxidase deficiency caused by deletion of COX12
    DOI 10.57711/qj5m-9346
    Type Other
    Author Saini Pk
    Link Publication
  • 2023
    Title The functional significance of mitochondrial respiratory chain supercomplexes.
    DOI 10.15252/embr.202357092
    Type Journal Article
    Author Barrientos A
    Journal EMBO reports
  • 2023
    Title Editorial: Mitochondria as a hub for neurodegenerative disorders.
    DOI 10.3389/fnmol.2023.1147468
    Type Journal Article
    Author Braun Rj
    Journal Frontiers in molecular neuroscience
    Pages 1147468
  • 2023
    Title Early fate decision for mitochondrially encoded proteins by a molecular triage.
    DOI 10.1016/j.molcel.2023.09.001
    Type Journal Article
    Author Carlström A
    Journal Molecular cell
  • 2022
    Title Multi-Omic Integration by Machine Learning (MIMaL) Reveals Protein-Metabolite Connections and New Gene Functions
    DOI 10.1101/2022.05.11.491527
    Type Preprint
    Author Dickinson Q
    Pages 2022.05.11.491527
    Link Publication
  • 2020
    Title Membrane-tethering of cytochrome c accelerates regulated cell death in yeast
    DOI 10.1038/s41419-020-02920-0
    Type Journal Article
    Author Toth A
    Journal Cell Death & Disease
    Pages 722
    Link Publication
  • 2020
    Title Molecular Connectivity of Mitochondrial Gene Expression and OXPHOS Biogenesis
    DOI 10.1016/j.molcel.2020.07.024
    Type Journal Article
    Author Singh A
    Journal Molecular Cell
    Link Publication
  • 2020
    Title Respiratory supercomplexes enhance electron transport by decreasing cytochrome c diffusion distance
    DOI 10.15252/embr.202051015
    Type Journal Article
    Author Berndtsson J
    Journal The EMBO Reports
    Link Publication
Methods & Materials
  • 2022 Link
    Title MIMal
    DOI 10.1093/bioinformatics/btad146
    Type Technology assay or reagent
    Public Access
    Link Link
Scientific Awards
  • 2021
    Title Editor Frontiers in Molecular Neuroscience
    Type Appointed as the editor/advisor to a journal or book series
    Level of Recognition Continental/International

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