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Structure and function of archetypal glycosyltransferases

Structure and function of archetypal glycosyltransferases

Bernd Nidetzky (ORCID: 0000-0002-5030-2643)
  • Grant DOI 10.55776/P18038
  • Funding program Principal Investigator Projects
  • Status ended
  • Start October 1, 2005
  • End September 30, 2010
  • Funding amount € 136,616

Disciplines

Biology (85%); Chemistry (15%)

Keywords

    Glycosyltransferase, Archaeon, Glycogen Phosphorylase, Sulfolobus Solfataricus, Trehalose Phosphorylase, Structure-Function Relationships

Abstract Final report

Simple and complex carbohydrates have been described as `the last frontier of molecular and cell biology`. The carbohydrates, or often `the sugars`, are biomolecules characterised by enormous structural complexity and functional diversity. To a wider public, they are known mainly because they provide a major caloric portion of the human diet and sometimes impart a sweet taste to the product. However, physiological roles in which carbohydrates act as a `cellular language` have been unveiled and rely on the huge coding potential of the individual monosaccharides that constitute the functional structure. Among the plethora of carbohydrate-active enzymes, those which can catalyse the formation of specific linkages between the monosaccharide building blocks to yield oligosaccharides are especially challenging. This group of enzymes, functionally classified as `the glycosyltransferases` (GTs), is large, and its members differ in respect to both amino acid sequence and three- dimensional structure, partly reflecting the complexity of the reaction products of their catalytic action. Obviously, a very well-defined orchestration of the action of different GTs in a place and time-dependent context is required to achieve a tight regulation of carbohydrate-mediated cellular responses at all levels of metabolism. In order to harness fully the newly bequeathed genomic resource in the form of a myriad of open-reading frames whose translation products that are likely involved in oligosaccharide synthesis, modification and turnover, we need to understand better how GT sequences relate to enzyme structure, mechanism, and specificity. The project aims at unraveling some "sweet secrets" of GT structure-function relationships by focusing on a representative enzyme group within the GT class: the phosphorylases. We will use the genome of the archaeon Sulfolobus solfataricus as resource of novel and seemingly archetypal variants of glycogen phosphorylase and trehalose phosphorylase, two important GTs of energy-related carbohydrate metabolism. The archaeal enzymes and selected mutants thereof will be examined through detailed biochemical and mechanistic characterisation, and their properties compared with homologues seen in other organisms and cell types. Through this process, means for extrapolation of molecular information to other sequence-related GTs are provided and strategies for the utilisation of the glycogenomic resource inspired.

The carbohydrates, or often `the sugars`, are biomolecules characterized by enormous structural complexity and functional diversity. To a wider public, they are known mainly because they provide a major caloric portion of the human diet and sometimes impart a sweet taste to the product. However, physiological roles in which carbohydrates act as important elements of biological recognition have been unveiled and it was shown that they rely on the huge coding potential of the individual monosaccharides that constitute the functional structure. Among the plethora of carbohydrate-active enzymes, those that can catalyse the formation of specific linkages between the monosaccharide building blocks to yield oligosaccharides are of special interest. This group of enzymes, functionally classified as `the glycosyltransferases`, is large, and its members differ in respect to both amino acid sequence and three-dimensional structure, partly reflecting the complexity of the reaction products of their catalytic action. Phosphorylases constitute a special group of glycosyltransferases that are widely distributed in microorganisms. Recent studies have indicated that phosphorylases are very useful catalysts for oligosaccharide synthesis in glycobiotechnology. In this project, different phosphorylases were characterized with respect to their biochemical properties and the catalytic mechanism utilised. The results of the project made an important contribution to the development of a biocatalytic process for production of glucosylglycerol, a naturally occurring molecule that is now applied as active ingredient in cosmetics.

Research institution(s)
  • Technische Universität Graz - 100%
International project participants
  • Sabato DAuria, Consiglio Nazionale delle Ricerche - Italy
  • Fabio Tanfani, Università Politecnica delle Marche - Italy
  • Kimberly Watson, University of Reading

Research Output

  • 337 Citations
  • 9 Publications
Publications
  • 2009
    Title Single-step enzymatic synthesis of ( R )-2- O -a- d -glucopyranosyl glycerate, a compatible solute from micro-organisms that functions as a protein stabiliser
    DOI 10.1039/b912621j
    Type Journal Article
    Author Sawangwan T
    Journal Organic & Biomolecular Chemistry
    Pages 4267-4270
  • 2008
    Title Studying non-covalent enzyme carbohydrate interactions by STD NMR
    DOI 10.1016/j.carres.2007.12.023
    Type Journal Article
    Author Brecker L
    Journal Carbohydrate Research
    Pages 2153-2161
  • 2008
    Title Mechanistic differences among retaining disaccharide phosphorylases: insights from kinetic analysis of active site mutants of sucrose phosphorylase and a,a-trehalose phosphorylase
    DOI 10.1016/j.carres.2008.01.029
    Type Journal Article
    Author Goedl C
    Journal Carbohydrate Research
    Pages 2032-2040
  • 2007
    Title Acid–base catalysis in Leuconostoc mesenteroides sucrose phosphorylase probed by site-directed mutagenesis and detailed kinetic comparison of wild-type and Glu237?Gln mutant enzymes
    DOI 10.1042/bj20070042
    Type Journal Article
    Author Schwarz A
    Journal Biochemical Journal
    Pages 441-449
    Link Publication
  • 2006
    Title Recombinant sucrose phosphorylase from Leuconostoc mesenteroides: Characterization, kinetic studies of transglucosylation, and application of immobilised enzyme for production of a-d-glucose 1-phosphate
    DOI 10.1016/j.jbiotec.2006.11.019
    Type Journal Article
    Author Goedl C
    Journal Journal of Biotechnology
    Pages 77-86
  • 2006
    Title Asp-196 ? Ala mutant of Leuconostoc mesenteroides sucrose phosphorylase exhibits altered stereochemical course and kinetic mechanism of glucosyl transfer to and from phosphate
    DOI 10.1016/j.febslet.2006.06.020
    Type Journal Article
    Author Schwarz A
    Journal FEBS Letters
    Pages 3905-3910
    Link Publication
  • 2006
    Title Trehalose phosphorylase from Pleurotus ostreatus: Characterization and stabilization by covalent modification, and application for the synthesis of a,a-trehalose
    DOI 10.1016/j.jbiotec.2006.11.022
    Type Journal Article
    Author Schwarz A
    Journal Journal of Biotechnology
    Pages 140-150
  • 2011
    Title Oriented Immobilization of Enzymes Made Fit for Applied Biocatalysis: Non-Covalent Attachment to Anionic Supports using Zbasic2 Module
    DOI 10.1002/cctc.201100103
    Type Journal Article
    Author Wiesbauer J
    Journal ChemCatChem
    Pages 1299-1303
  • 2010
    Title Substitution of the catalytic acid–base Glu237 by Gln suppresses hydrolysis during glucosylation of phenolic acceptors catalyzed by Leuconostoc mesenteroides sucrose phosphorylase
    DOI 10.1016/j.molcatb.2009.12.007
    Type Journal Article
    Author Wiesbauer J
    Journal Journal of Molecular Catalysis B: Enzymatic
    Pages 24-29

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