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Heat-loving sporeforming sulfate reducers in the cold

Heat-loving sporeforming sulfate reducers in the cold

Alexander Loy (ORCID: 0000-0001-8923-5882)
  • Grant DOI 10.55776/P20185
  • Funding program Principal Investigator Projects
  • Status ended
  • Start November 1, 2007
  • End October 31, 2012
  • Funding amount € 224,564
  • Project website

Disciplines

Biology (100%)

Keywords

    Sulfate-Reducing Microorganisms, Extremophiles, Biogeography, Spore-Forming, Thermophilic, Marine

Abstract Final report

Sulfate-reducing microbes (SRM) are of global relevance for sulfur cycling and the mineralization of carbon in the upper, anoxic sediment layers of the seafloor. In addition to the common psychro- and/or mesophilic microbial SRM populations, some cold and temperate marine sediments unexpectedly host a cryptic community of presumably inactive spores from thermophilic SRM, whose source and mode of dispersal are currently unknown. One hypothesis is that these heat-loving, sporeforming SRM grow in the hot subsurface and are transported to the surface as spores via locally defined seepages, which could be areas where also deep gas and possibly oil occasionally penetrate up to the sediment surface. The apparent inability of the thermophilic SRM to grow in the cold sediments where they were discovered provides a unique possibility to exemplarily study the biogeography and dispersal of microbial cells in the oceans. This project thus aims to shed light on the origin of thermophilic SRM spores by revealing their diversity and distribution in ocean sediments and waters of various geographic regions using a combination of molecular, biogeochemical, and cultivation-based methods. Practical molecular and biogeochemical assays will be developed for the detection and quantification of thermophilic, sporeforming SRM and applied to test if these organisms are bioindicators for fluid flow from the hot subsurface and thus potentially also for deep oil/gas deposits.

Microbial biogeography is influenced by the combined effects of passive dispersal and environmental selection, but their individual impacts can be difficult to discern. Inactive spores of thermophilic microorganisms that are found at cold or temperate seafloor sites were established as indicators to selectively reveal the consequence of passive dispersal on the biogeography of marine microorganisms. High-temperature germination experiments combined with molecular and biogeochemical analysis revealed the presence of a genetically and metabolically diverse community of spores in marine sediments. Closest relatives to these bacteria come from subsurface petroleum reservoir and marine hydrothermal vent ecosystems, suggesting that seabed fluid flow from these hot spots is seeding the cold ocean with thermophiles and may broadly influence the composition of marine microbial communities. Thermophile spores are constantly supplied to the cold or temperate seafloor via oceanic currents and sedimentation. Deposited spores survive for a long-time and potentially become metabolically active in the warm, deep biosphere. A global biogeography survey of thermophile spores demonstrated that the distribution of spores in marine surface sediments is differentially influenced by the relative connectivity of regional water masses to global ocean circulation. Hydrothermal sediments in the Guaymas Basin harbored a large fraction of globally distributed spore species and were identified as typical thermophile source environments. Limitations in passive dispersal to certain ocean regions, as observed for thermophile spores, will have considerable impact on marine biogeography of vegetative cells, dependent on the population sizes and levels of resistance against environmental stress of individual marine microbial taxa.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Bo Barker Jørgensen, Aarhus University - Denmark
  • Kai Finster, Aarhus University - Denmark

Research Output

  • 2853 Citations
  • 21 Publications
Publications
  • 2012
    Title Sulfate-Reducing Microorganisms in Wetlands – Fameless Actors in Carbon Cycling and Climate Change
    DOI 10.3389/fmicb.2012.00072
    Type Journal Article
    Author Pester M
    Journal Frontiers in Microbiology
    Pages 72
    Link Publication
  • 2012
    Title Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria
    DOI 10.1038/ismej.2012.41
    Type Journal Article
    Author Vandieken V
    Journal The ISME Journal
    Pages 2078-2090
    Link Publication
  • 2012
    Title Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years
    DOI 10.1038/ismej.2012.83
    Type Journal Article
    Author De Rezende J
    Journal The ISME Journal
    Pages 72-84
    Link Publication
  • 2012
    Title Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
    DOI 10.1128/jb.01392-12
    Type Journal Article
    Author Pester M
    Journal Journal of Bacteriology
    Pages 6300-6301
    Link Publication
  • 2012
    Title Modeling Formamide Denaturation of Probe-Target Hybrids for Improved Microarray Probe Design in Microbial Diagnostics
    DOI 10.1371/journal.pone.0043862
    Type Journal Article
    Author Yilmaz L
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Identification of acetateoxidizing manganese-reducing bacteria in three manganese oxide-rich marine sediments by stable isotope probing.
    Type Journal Article
    Author Thamdrup B
    Journal The ISME Journal
  • 2011
    Title amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
    DOI 10.1111/j.1462-2920.2011.02666.x
    Type Journal Article
    Author Pester M
    Journal Environmental Microbiology
    Pages 525-539
    Link Publication
  • 2011
    Title Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification
    DOI 10.1128/aem.05220-11
    Type Journal Article
    Author Berry D
    Journal Applied and Environmental Microbiology
    Pages 7846-7849
    Link Publication
  • 2011
    Title Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms
    DOI 10.1073/pnas.1105347108
    Type Journal Article
    Author Gruber-Vodicka H
    Journal Proceedings of the National Academy of Sciences
    Pages 12078-12083
    Link Publication
  • 2011
    Title Systematic Spatial Bias in DNA Microarray Hybridization Is Caused by Probe Spot Position-Dependent Variability in Lateral Diffusion
    DOI 10.1371/journal.pone.0023727
    Type Journal Article
    Author Steger D
    Journal PLoS ONE
    Link Publication
  • 2013
    Title Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
    DOI 10.1038/ismej.2013.225
    Type Journal Article
    Author Müller A
    Journal The ISME Journal
    Pages 1153-1165
    Link Publication
  • 2013
    Title NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira
    DOI 10.1111/1462-2920.12300
    Type Journal Article
    Author Pester M
    Journal Environmental Microbiology
    Pages 3055-3071
    Link Publication
  • 2010
    Title Probing Identity and Physiology of Uncultured Microorganisms with Isotope Labeling Techniques
    DOI 10.1007/978-90-481-9204-5_6
    Type Book Chapter
    Author Loy A
    Publisher Springer Nature
    Pages 127-145
  • 2010
    Title Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands
    DOI 10.1128/aem.01352-10
    Type Journal Article
    Author Steger D
    Journal Applied and Environmental Microbiology
    Pages 1231-1242
    Link Publication
  • 2010
    Title A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland
    DOI 10.1038/ismej.2010.75
    Type Journal Article
    Author Pester M
    Journal The ISME Journal
    Pages 1591-1602
    Link Publication
  • 2010
    Title Phylogenetic Microarrays for Cultivation-Independent Identification and Metabolic Characterization of Microorganisms in Complex Samples
    DOI 10.1007/978-1-60761-947-5_13
    Type Book Chapter
    Author Loy A
    Publisher Springer Nature
    Pages 187-206
  • 2019
    Title Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments
    DOI 10.3389/fmicb.2019.00245
    Type Journal Article
    Author Hanson C
    Journal Frontiers in Microbiology
    Pages 245
    Link Publication
  • 2008
    Title probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity
    DOI 10.1111/j.1462-2920.2008.01706.x
    Type Journal Article
    Author Loy A
    Journal Environmental Microbiology
    Pages 2894-2898
    Link Publication
  • 0
    Title Geomicrobiology: Molecular and Environmental Perspective.
    Type Other
    Author Barton Ll
  • 2010
    Title Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature
    DOI 10.1111/j.1462-2920.2010.02161.x
    Type Journal Article
    Author Hubert C
    Journal Environmental Microbiology
    Pages 1089-1104
  • 2009
    Title A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed
    DOI 10.1126/science.1174012
    Type Journal Article
    Author Hubert C
    Journal Science
    Pages 1541-1544
    Link Publication

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