Heat-loving sporeforming sulfate reducers in the cold
Heat-loving sporeforming sulfate reducers in the cold
Disciplines
Biology (100%)
Keywords
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Sulfate-Reducing Microorganisms,
Extremophiles,
Biogeography,
Spore-Forming,
Thermophilic,
Marine
Sulfate-reducing microbes (SRM) are of global relevance for sulfur cycling and the mineralization of carbon in the upper, anoxic sediment layers of the seafloor. In addition to the common psychro- and/or mesophilic microbial SRM populations, some cold and temperate marine sediments unexpectedly host a cryptic community of presumably inactive spores from thermophilic SRM, whose source and mode of dispersal are currently unknown. One hypothesis is that these heat-loving, sporeforming SRM grow in the hot subsurface and are transported to the surface as spores via locally defined seepages, which could be areas where also deep gas and possibly oil occasionally penetrate up to the sediment surface. The apparent inability of the thermophilic SRM to grow in the cold sediments where they were discovered provides a unique possibility to exemplarily study the biogeography and dispersal of microbial cells in the oceans. This project thus aims to shed light on the origin of thermophilic SRM spores by revealing their diversity and distribution in ocean sediments and waters of various geographic regions using a combination of molecular, biogeochemical, and cultivation-based methods. Practical molecular and biogeochemical assays will be developed for the detection and quantification of thermophilic, sporeforming SRM and applied to test if these organisms are bioindicators for fluid flow from the hot subsurface and thus potentially also for deep oil/gas deposits.
Microbial biogeography is influenced by the combined effects of passive dispersal and environmental selection, but their individual impacts can be difficult to discern. Inactive spores of thermophilic microorganisms that are found at cold or temperate seafloor sites were established as indicators to selectively reveal the consequence of passive dispersal on the biogeography of marine microorganisms. High-temperature germination experiments combined with molecular and biogeochemical analysis revealed the presence of a genetically and metabolically diverse community of spores in marine sediments. Closest relatives to these bacteria come from subsurface petroleum reservoir and marine hydrothermal vent ecosystems, suggesting that seabed fluid flow from these hot spots is seeding the cold ocean with thermophiles and may broadly influence the composition of marine microbial communities. Thermophile spores are constantly supplied to the cold or temperate seafloor via oceanic currents and sedimentation. Deposited spores survive for a long-time and potentially become metabolically active in the warm, deep biosphere. A global biogeography survey of thermophile spores demonstrated that the distribution of spores in marine surface sediments is differentially influenced by the relative connectivity of regional water masses to global ocean circulation. Hydrothermal sediments in the Guaymas Basin harbored a large fraction of globally distributed spore species and were identified as typical thermophile source environments. Limitations in passive dispersal to certain ocean regions, as observed for thermophile spores, will have considerable impact on marine biogeography of vegetative cells, dependent on the population sizes and levels of resistance against environmental stress of individual marine microbial taxa.
- Universität Wien - 100%
- Bo Barker Jørgensen, Aarhus University - Denmark
- Kai Finster, Aarhus University - Denmark
Research Output
- 2853 Citations
- 21 Publications
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2012
Title Sulfate-Reducing Microorganisms in Wetlands – Fameless Actors in Carbon Cycling and Climate Change DOI 10.3389/fmicb.2012.00072 Type Journal Article Author Pester M Journal Frontiers in Microbiology Pages 72 Link Publication -
2012
Title Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria DOI 10.1038/ismej.2012.41 Type Journal Article Author Vandieken V Journal The ISME Journal Pages 2078-2090 Link Publication -
2012
Title Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years DOI 10.1038/ismej.2012.83 Type Journal Article Author De Rezende J Journal The ISME Journal Pages 72-84 Link Publication -
2012
Title Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T DOI 10.1128/jb.01392-12 Type Journal Article Author Pester M Journal Journal of Bacteriology Pages 6300-6301 Link Publication -
2012
Title Modeling Formamide Denaturation of Probe-Target Hybrids for Improved Microarray Probe Design in Microbial Diagnostics DOI 10.1371/journal.pone.0043862 Type Journal Article Author Yilmaz L Journal PLoS ONE Link Publication -
2012
Title Identification of acetateoxidizing manganese-reducing bacteria in three manganese oxide-rich marine sediments by stable isotope probing. Type Journal Article Author Thamdrup B Journal The ISME Journal -
2011
Title amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions DOI 10.1111/j.1462-2920.2011.02666.x Type Journal Article Author Pester M Journal Environmental Microbiology Pages 525-539 Link Publication -
2011
Title Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification DOI 10.1128/aem.05220-11 Type Journal Article Author Berry D Journal Applied and Environmental Microbiology Pages 7846-7849 Link Publication -
2011
Title Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms DOI 10.1073/pnas.1105347108 Type Journal Article Author Gruber-Vodicka H Journal Proceedings of the National Academy of Sciences Pages 12078-12083 Link Publication -
2011
Title Systematic Spatial Bias in DNA Microarray Hybridization Is Caused by Probe Spot Position-Dependent Variability in Lateral Diffusion DOI 10.1371/journal.pone.0023727 Type Journal Article Author Steger D Journal PLoS ONE Link Publication -
2013
Title Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents DOI 10.1038/ismej.2013.225 Type Journal Article Author Müller A Journal The ISME Journal Pages 1153-1165 Link Publication -
2013
Title NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira DOI 10.1111/1462-2920.12300 Type Journal Article Author Pester M Journal Environmental Microbiology Pages 3055-3071 Link Publication -
2010
Title Probing Identity and Physiology of Uncultured Microorganisms with Isotope Labeling Techniques DOI 10.1007/978-90-481-9204-5_6 Type Book Chapter Author Loy A Publisher Springer Nature Pages 127-145 -
2010
Title Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands DOI 10.1128/aem.01352-10 Type Journal Article Author Steger D Journal Applied and Environmental Microbiology Pages 1231-1242 Link Publication -
2010
Title A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland DOI 10.1038/ismej.2010.75 Type Journal Article Author Pester M Journal The ISME Journal Pages 1591-1602 Link Publication -
2010
Title Phylogenetic Microarrays for Cultivation-Independent Identification and Metabolic Characterization of Microorganisms in Complex Samples DOI 10.1007/978-1-60761-947-5_13 Type Book Chapter Author Loy A Publisher Springer Nature Pages 187-206 -
2019
Title Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments DOI 10.3389/fmicb.2019.00245 Type Journal Article Author Hanson C Journal Frontiers in Microbiology Pages 245 Link Publication -
2008
Title probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity DOI 10.1111/j.1462-2920.2008.01706.x Type Journal Article Author Loy A Journal Environmental Microbiology Pages 2894-2898 Link Publication -
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Title Geomicrobiology: Molecular and Environmental Perspective. Type Other Author Barton Ll -
2010
Title Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature DOI 10.1111/j.1462-2920.2010.02161.x Type Journal Article Author Hubert C Journal Environmental Microbiology Pages 1089-1104 -
2009
Title A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed DOI 10.1126/science.1174012 Type Journal Article Author Hubert C Journal Science Pages 1541-1544 Link Publication