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Neuronal RNA granules and their functions at the synapse

Neuronal RNA granules and their functions at the synapse

Michael Kiebler (ORCID: )
  • Grant DOI 10.55776/P20583
  • Funding program Principal Investigator Projects
  • Status ended
  • Start February 1, 2008
  • End May 31, 2011
  • Funding amount € 399,498

Disciplines

Biology (75%); Medical-Theoretical Sciences, Pharmacy (25%)

Keywords

    Dendritic RNA localization, Exon junction complex/EJC, Neuronal RNA granules/RNPs, Live imaging of RNA transport, Double-stranded RNA binding protein, Mrna Stability/Degradation

Abstract Final report

Certain neuronal mRNAs are transported to dendrites, where their local translation contributes to synaptic plasticity, learning and memory. Defects in RNA localization can have severe consequences for the function of cells as documented for human diseases including fragile X mental retardation, spinal muscular atrophy, and myotonic dystrophy. Transport of RNAs to dendrites and synapses is thought to occur in ribonucleoprotein particles (RNPs), however, little is known about the underlying components and their functions in mRNA localization. We propose to isolate functional RNA transport RNPs from rat neurons. Known particle components such as Staufen1, Staufen2, and Barentsz serve as molecular `handles` and as markers to unravel the molecular composition of these neuronal RNA granules. The functions of newly identified components, including previously known localization factors, as well as new factors and RNA cargoes, will be characterized in detail at the cellular and molecular level using a battery of in vivo and in vitro functional assays. We expect that this thorough analysis will greatly advance the mechanistic understanding of dendritic RNA localization and its contribution to learning and memory at the synapse.

Certain neuronal mRNAs are transported to dendrites, where their local translation contributes to synaptic plasticity, learning and memory. Defects in RNA localization can have severe consequences for the function of cells as documented for human diseases including fragile X mental retardation, spinal muscular atrophy, and myotonic dystrophy. Transport of RNAs to dendrites and synapses is thought to occur in ribonucleoprotein particles (RNPs), however, little is known about the underlying components and their functions in mRNA localization. We propose to isolate functional RNA transport RNPs from rat neurons. Known particle components such as Staufen1, Staufen2, and Barentsz serve as molecular "handles" and as markers to unravel the molecular composition of these neuronal RNA granules. The functions of newly identified components, including previously known localization factors, as well as new factors and RNA cargoes, will be characterized in detail at the cellular and molecular level using a battery of in vivo and in vitro functional assays. We expect that this thorough analysis will greatly advance the mechanistic understanding of dendritic RNA localization and its contribution to learning and memory at the synapse.

Research institution(s)
  • Medizinische Universität Wien - 100%

Research Output

  • 1057 Citations
  • 12 Publications
Publications
  • 2017
    Title A retained intron in the 3'-UTR of Calm3 mRNA mediates its Staufen2- and activity-dependent localization to neuronal dendrites
    DOI 10.15252/embr.201744334
    Type Journal Article
    Author Sharangdhar T
    Journal The EMBO Reports
    Link Publication
  • 2011
    Title Mechanisms of dendritic mRNA transport and its role in synaptic tagging
    DOI 10.1038/emboj.2011.278
    Type Journal Article
    Author Doyle M
    Journal The EMBO Journal
    Pages 3540-3552
    Link Publication
  • 2011
    Title Independent localization of MAP2, CaMKIIa and ß-actin RNAs in low copy numbers
    DOI 10.1038/embor.2011.149
    Type Journal Article
    Author Mikl M
    Journal The EMBO Reports
    Pages 1077-1084
    Link Publication
  • 2012
    Title A zipcode unzipped
    DOI 10.1101/gad.184945.111
    Type Journal Article
    Author Doyle M
    Journal Genes & Development
    Pages 110-113
    Link Publication
  • 2012
    Title RNA-binding proteins involved in RNA localization and their implications in neuronal diseases
    DOI 10.1111/j.1460-9568.2012.08160.x
    Type Journal Article
    Author Tolino M
    Journal European Journal of Neuroscience
    Pages 1818-1836
  • 2009
    Title What are the roles of microRNAs at the mammalian synapse?
    DOI 10.1016/j.neulet.2009.06.050
    Type Journal Article
    Author Konecna A
    Journal Neuroscience Letters
    Pages 63-68
  • 2008
    Title A loss of function allele for murine Staufen1 leads to impairment of dendritic Staufen1-RNP delivery and dendritic spine morphogenesis
    DOI 10.1073/pnas.0804583105
    Type Journal Article
    Author Vessey J
    Journal Proceedings of the National Academy of Sciences
    Pages 16374-16379
    Link Publication
  • 2013
    Title Staufen2 Regulates Neuronal Target RNAs
    DOI 10.1016/j.celrep.2013.11.039
    Type Journal Article
    Author Heraud-Farlow J
    Journal Cell Reports
    Pages 1511-1518
    Link Publication
  • 2013
    Title Interactome of Two Diverse RNA Granules Links mRNA Localization to Translational Repression in Neurons
    DOI 10.1016/j.celrep.2013.11.023
    Type Journal Article
    Author Fritzsche R
    Journal Cell Reports
    Pages 1749-1762
    Link Publication
  • 2010
    Title RNA localization in neurite morphogenesis and synaptic regulation: current evidence and novel approaches
    DOI 10.1007/s00359-010-0520-x
    Type Journal Article
    Author Mikl M
    Journal Journal of Comparative Physiology A
    Pages 321-334
    Link Publication
  • 2010
    Title Dendritically Localized Transcripts Are Sorted into Distinct Ribonucleoprotein Particles That Display Fast Directional Motility along Dendrites of Hippocampal Neurons
    DOI 10.1523/jneurosci.3537-09.2010
    Type Journal Article
    Author Tübing F
    Journal The Journal of Neuroscience
    Pages 4160-4170
    Link Publication
  • 2010
    Title Mammalian Pumilio 2 regulates dendrite morphogenesis and synaptic function
    DOI 10.1073/pnas.0907128107
    Type Journal Article
    Author Vessey J
    Journal Proceedings of the National Academy of Sciences
    Pages 3222-3227
    Link Publication

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