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Polyoxometalate facilitated protein crystallization

Polyoxometalate facilitated protein crystallization

Annette Rompel (ORCID: 0000-0002-5919-0553)
  • Grant DOI 10.55776/P27534
  • Funding program Principal Investigator Projects
  • Status ended
  • Start May 1, 2015
  • End December 31, 2018
  • Funding amount € 307,692

Disciplines

Biology (50%); Chemistry (50%)

Keywords

    Polyoxometalate, Polyoxometalate Protein Interaction, Protein Crystallization, Crystallography, Protein Screening Set, Metal Clusters

Abstract Final report

Polyoxometalates (POMs) represent a large class of discrete polynuclear metal-oxo anions used for many different applications in catalysis, as sensors, in bio- and nanotechnology and in medical and material sciences. Yet there are very few studies that explore the potential of POMs to facilitate protein crystallization by looking specifically into the interaction between different types of POMs with proteins. This grant project is designed to make a contribution towards the fundamental molecular understanding on the interaction of POMs with proteins. Structurally knownPOMs (Na6[V10O28] 18H2O,Na6[TeW 6O24] 22H2O, Na14[NaP5W 30O110] 31H2O and Na6[P2W 18O62] 18H2O) and new POMs (Anderson-, Keggin-, and Lindqvist-based POMs) as well as hybrid POMs will be synthesized and characterized by different spectroscopic techniques and X-ray structure analysis with the aim to investigate the water solubility and the range of pH-stability. The elucidation of the crystal structures of several differing POM-protein complexes is the main goal. For the analysis of the structures a combination of protein purification, biochemical characterization, molecular biology and X-ray structure determination are the methods of choice. The proteins of interest are hen-egg white lysozyme, proteinase K, humanapo-transferrin, humanserumalbumin,myosin, polyphenol oxidase, hemocyanin, and the membrane protein bacteriorhodopsin. The outcome of this project will give novel insights to fundamental physical properties of polyoxometalates as well as insights into POM-protein interactions which is lacking in respective research community. With this highly interdisciplinary project a commercially available POM based crystallization screening set is intended to be developed. 1

Protein crystallography is still the most widely used method to obtain structural information on target proteins and protein-target interactions within the atomic resolution range. These structural information are indispensable for the understanding of the majority of biological processes and thus also of drug-target interactions. However, obtaining crystals that diffract to high resolutions represents the most essential but also the narrowest bottleneck in X-ray crystallography as this process is basically very time- and resource-consuming with no guarantee of success. The use of additives is an established process to facilitate or even enable the crystallization of proteins, however, their use is largely restricted to certain proteins or conditions. Therefore, there is a quest for a more universal additive addressing a wider range of proteins which is able to crystallize yet structurally unknown proteins. Therefore, we tested several compounds that belong to the class of polyoxometalates (POMs) for their suitability as crystallization agent. POMs are described as clusters of transition metal ions (molybdenum, tungsten, vanadium and niobium) and oxygen ions exhibiting an overwhelming diversity in size and structure with outstanding properties and functions. Our investigations revealed that the Anderson-Evans polyoxotungstate [TeW 6O24]6- (TEW) was the most suitable POM archetype in this regard as it led to the crystallization of two previously unknown proteins, polyphenol oxidase from mushroom (abPPO4) and aurone synthase from Coreopsis grandiflora (cgAUS1), and to the crystallization of the model protein hen-egg white lysozyme into a new crystal form and to a new crystal packing in the crystal structure of the HSP70 nucleotide binding domain. Due to these promising results and its unique properties, TEW was identified as a powerful crystallization additive exhibiting major advantages over commonly used additives. Due to its six-fold negative charge, TEW binds to positively charged protein patches but also to polar and uncharged regions, thus, addressing in principle all proteins possessing such sites. In this way TEW acts as a kind of inorganic glue as it, among others, connects equally (positively) charged proteins facilitating crystal lattice formation. TEW is highly stable under most crystallization conditions and it exhibits a huge entropic contribution to the crystallization energy by releasing large amounts of water molecules during crystal contact formation and thus energetically favors the crystallization event. Furthermore, by being a tungsten metal cluster it provides valuable anomalous signals, which are necessary for the phasing of proteins that lack suitable homologues for molecular replacement. All these features and results demonstrate that TEW, in many respects, is predestined as a powerful crystallization additive and crystallographers will benefit from its usage. Therefore, TEW was successfully established on the market and is now available as part of a crystallization screen (Jena Biosciences) and thus commercially accessible for all crystallographers.

Research institution(s)
  • Universität Wien - 100%

Research Output

  • 2796 Citations
  • 40 Publications
Publications
  • 2019
    Title Keggin-type polyoxotungstates as mushroom tyrosinase inhibitors - A speciation study
    DOI 10.1038/s41598-019-41261-7
    Type Journal Article
    Author Breibeck J
    Journal Scientific Reports
    Pages 5183
    Link Publication
  • 2019
    Title Inhibition of Na+/K+- and Ca2+-ATPase activities by phosphotetradecavanadate
    DOI 10.1016/j.jinorgbio.2019.110700
    Type Journal Article
    Author Fraqueza G
    Journal Journal of Inorganic Biochemistry
    Pages 110700
    Link Publication
  • 2019
    Title Synthesis, characterization, and POM-protein interactions of a Fe-substituted Krebs-type Sandwich-tungstoantimonate
    DOI 10.1007/s00706-019-2381-5
    Type Journal Article
    Author Tanuhadi E
    Journal Monatshefte für Chemie - Chemical Monthly
    Pages 871-875
    Link Publication
  • 2019
    Title Transition metal-substituted Keggin polyoxotungstates enabling covalent attachment to proteinase K upon co-crystallization
    DOI 10.1039/c9cc05818d
    Type Journal Article
    Author Breibeck J
    Journal Chemical Communications
    Pages 11519-11522
    Link Publication
  • 2021
    Title Wells–Dawson phosphotungstates as mushroom tyrosinase inhibitors: a speciation study
    DOI 10.1038/s41598-021-96491-5
    Type Journal Article
    Author Lampl R
    Journal Scientific Reports
    Pages 19354
    Link Publication
  • 2021
    Title Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K
    DOI 10.1021/acs.inorgchem.1c02005
    Type Journal Article
    Author Breibeck J
    Journal Inorganic Chemistry
    Pages 15096-15100
    Link Publication
  • 2020
    Title Synthesis, Characterization, and Phosphoesterase Activity of a Series of 4f- and 4d-Sandwich-Type Germanotungstates [(n-C4H9)4N] l/m H2[(M(H2O)3)(?-GeW10O35)2] (M = CeIII, NdIII, GdIII, ErIII, l = 7; ZrIV, m = 6)
    DOI 10.1021/acs.inorgchem.0c01852
    Type Journal Article
    Author Tanuhadi E
    Journal Inorganic Chemistry
    Pages 14078-14084
    Link Publication
  • 2020
    Title Polyoxometalates in solution: speciation under spotlight
    DOI 10.1039/d0cs00392a
    Type Journal Article
    Author Gumerova N
    Journal Chemical Society Reviews
    Pages 7568-7601
    Link Publication
  • 2020
    Title The Aquaporin-3-Inhibiting Potential of Polyoxotungstates
    DOI 10.3390/ijms21072467
    Type Journal Article
    Author Pimpão C
    Journal International Journal of Molecular Sciences
    Pages 2467
    Link Publication
  • 2020
    Title Cation-Directed Synthetic Strategy Using 4f Tungstoantimonates as Nonlacunary Precursors for the Generation of 3d–4f Clusters
    DOI 10.1021/acs.inorgchem.0c00890
    Type Journal Article
    Author Tanuhadi E
    Journal Inorganic Chemistry
    Pages 8461-8467
    Link Publication
  • 2018
    Title Polyoxometalates: more than a phasing tool in protein crystallography
    DOI 10.1007/s40828-018-0064-1
    Type Journal Article
    Author Bijelic A
    Journal ChemTexts
    Pages 10
    Link Publication
  • 2018
    Title Successful amphiphiles as the key to crystallization of membrane proteins: Bridging theory and practice
    DOI 10.1016/j.bbagen.2018.11.004
    Type Journal Article
    Author Breibeck J
    Journal Biochimica et Biophysica Acta (BBA) - General Subjects
    Pages 437-455
    Link Publication
  • 2018
    Title Synthesis of the first Zn 6 -hexagon sandwich-tungstoantimonate via rearrangement of a non-lacunary Krebs-type polyoxotungstate
    DOI 10.1039/c8dt02787k
    Type Journal Article
    Author Tanuhadi E
    Journal Dalton Transactions
    Pages 15651-15655
    Link Publication
  • 2020
    Title Incorporation of CrIII into a Keggin Polyoxometalate as a Chemical Strategy to Stabilize a Labile {CrIIIO4} Tetrahedral Conformation and Promote Unattended Single-Ion Magnet Properties
    DOI 10.1021/jacs.9b12797
    Type Journal Article
    Author Gumerova N
    Journal Journal of the American Chemical Society
    Pages 3336-3339
    Link Publication
  • 2020
    Title Binding of a Fatty Acid-Functionalized Anderson-Type Polyoxometalate to Human Serum Albumin
    DOI 10.1021/acs.inorgchem.9b03407
    Type Journal Article
    Author Bijelic A
    Journal Inorganic Chemistry
    Pages 5243-5246
    Link Publication
  • 2020
    Title Aluminum-Substituted Keggin Germanotungstate [HAl(H2O)GeW11O39]4–: Synthesis, Characterization, and Antibacterial Activity
    DOI 10.1021/acs.inorgchem.0c03311
    Type Journal Article
    Author Tanuhadi E
    Journal Inorganic Chemistry
    Pages 28-31
    Link Publication
  • 2017
    Title The potential of hexatungstotellurate(VI) to induce a significant entropic gain during protein crystallization
    DOI 10.1107/s2052252517012349
    Type Journal Article
    Author Molitor C
    Journal IUCrJ
    Pages 734-740
    Link Publication
  • 2016
    Title [Ni(OH) 3 W 6 O 18 (OCH 2 ) 3 CCH 2 OH] 4- : the first tris-functionalized Anderson-type heteropolytungstate
    DOI 10.1039/c6cc04326g
    Type Journal Article
    Author Gumerova N
    Journal Chemical Communications
    Pages 9263-9266
    Link Publication
  • 2016
    Title Synthesis and Characterization of the First Nickel(II)-Centered Single-Side Tris-Functionalized Anderson-Type Polyoxomolybdate
    DOI 10.1002/ejic.201601198
    Type Journal Article
    Author Gumerova N
    Journal European Journal of Inorganic Chemistry
    Pages 5507-5511
    Link Publication
  • 2021
    Title Interweaving Disciplines to Advance Chemistry: Applying Polyoxometalates in Biology
    DOI 10.1021/acs.inorgchem.1c00125
    Type Journal Article
    Author Gumerova N
    Journal Inorganic Chemistry
    Pages 6109-6114
    Link Publication
  • 2019
    Title Tuning the interactions of decavanadate with thaumatin, lysozyme, proteinase K and human serum proteins by its coordination to a pentaaquacobalt( ii ) complex cation
    DOI 10.1039/c9nj02495f
    Type Journal Article
    Author Krivosudský L
    Journal New Journal of Chemistry
    Pages 17863-17871
    Link Publication
  • 2019
    Title Serendipita Species Trigger Cultivar-Specific Responses to Fusarium Wilt in Tomato
    DOI 10.3390/agronomy9100595
    Type Journal Article
    Author Sefloo N
    Journal Agronomy
    Pages 595
    Link Publication
  • 2019
    Title Maternal Platelets—Friend or Foe of the Human Placenta?
    DOI 10.3390/ijms20225639
    Type Journal Article
    Author Moser G
    Journal International Journal of Molecular Sciences
    Pages 5639
    Link Publication
  • 2019
    Title Synthesis, crystal structure and characterization of two new Cr(III)-substituted polyoxotungstates: [Cr((OCH2)3CCH2OH)2W6O18]3- and [H3Cr2W10O38(H2O)2]7 -
    DOI 10.1016/j.poly.2019.04.057
    Type Journal Article
    Author Gumerova N
    Journal Polyhedron
    Pages 202-208
    Link Publication
  • 2019
    Title Regioselective synthesis and characterization of monovanadium-substituted ß-octa­molybdate [VMo7O26]5-
    DOI 10.1107/s205322961900620x
    Type Journal Article
    Author Krivosudský L
    Journal Acta Crystallographica Section C
    Pages 872-876
    Link Publication
  • 2018
    Title Synthesis, structures and applications of electron-rich polyoxometalates
    DOI 10.1038/s41570-018-0112
    Type Journal Article
    Author Gumerova N
    Journal Nature Reviews Chemistry
    Pages 0112
    Link Publication
  • 2018
    Title Iron(II) and copper(II) paratungstates B: a single-crystal X-ray diffraction study
    DOI 10.1107/s2053229618010021
    Type Journal Article
    Author Gumerova N
    Journal Acta Crystallographica Section C: Structural Chemistry
    Pages 1252-1259
    Link Publication
  • 2018
    Title Synthesis and characterization of hybrid Anderson hexa­molybdoaluminates(III) functionalized with indometacin or cinnamic acid
    DOI 10.1107/s2053229618012536
    Type Journal Article
    Author Gumerova N
    Journal Acta Crystallographica Section C: Structural Chemistry
    Pages 1378-1383
    Link Publication
  • 2018
    Title Antibacterial Activity of Polyoxometalates Against Moraxella catarrhalis
    DOI 10.3389/fchem.2018.00336
    Type Journal Article
    Author Gumerova N
    Journal Frontiers in Chemistry
    Pages 336
    Link Publication
  • 2018
    Title The crystallization additive hexatungstotellurate promotes the crystallization of the HSP70 nucleotide binding domain into two different crystal forms
    DOI 10.1371/journal.pone.0199639
    Type Journal Article
    Author Mac Sweeney A
    Journal PLOS ONE
    Link Publication
  • 2018
    Title Polyoxometalates as Potential Next-Generation Metallodrugs in the Combat Against Cancer
    DOI 10.1002/anie.201803868
    Type Journal Article
    Author Bijelic A
    Journal Angewandte Chemie International Edition
    Pages 2980-2999
    Link Publication
  • 2018
    Title Im Kampf gegen Krebs: Polyoxometallate als nächste Generation metallhaltiger Medikamente
    DOI 10.1002/ange.201803868
    Type Journal Article
    Author Bijelic A
    Journal Angewandte Chemie
    Pages 3008-3029
    Link Publication
  • 2018
    Title The P-type ATPase inhibiting potential of polyoxotungstates†
    DOI 10.1039/c7mt00279c
    Type Journal Article
    Author Gumerova N
    Journal Metallomics
    Pages 287-295
    Link Publication
  • 2018
    Title The antibacterial activity of polyoxometalates: structures, antibiotic effects and future perspectives
    DOI 10.1039/c7cc07549a
    Type Journal Article
    Author Bijelic A
    Journal Chemical Communications
    Pages 1153-1169
    Link Publication
  • 2017
    Title Ten Good Reasons for the Use of the Tellurium-Centered Anderson–Evans Polyoxotungstate in Protein Crystallography
    DOI 10.1021/acs.accounts.7b00109
    Type Journal Article
    Author Bijelic A
    Journal Accounts of Chemical Research
    Pages 1441-1448
    Link Publication
  • 2016
    Title Red cell distribution width and mortality in carotid atherosclerosis
    DOI 10.1111/eci.12584
    Type Journal Article
    Author Wonnerth A
    Journal European Journal of Clinical Investigation
    Pages 198-204
  • 2015
    Title The use of polyoxometalates in protein crystallography – An attempt to widen a well-known bottleneck
    DOI 10.1016/j.ccr.2015.03.018
    Type Journal Article
    Author Bijelic A
    Journal Coordination Chemistry Reviews
    Pages 22-38
    Link Publication
  • 2016
    Title In situ formation of the first proteinogenically functionalized [TeW 6 O 24 O 2 (Glu)] 7- structure reveals unprecedented chemical and geometrical features of the Anderson-type cluster
    DOI 10.1039/c6cc07004c
    Type Journal Article
    Author Molitor C
    Journal Chemical Communications
    Pages 12286-12289
    Link Publication
  • 2015
    Title The Synthesis and Characterization of Aromatic Hybrid Anderson–Evans POMs and their Serum Albumin Interactions: The Shift from Polar to Hydrophobic Interactions
    DOI 10.1002/chem.201502458
    Type Journal Article
    Author Al-Sayed E
    Journal Chemistry – A European Journal
    Pages 17800-17807
    Link Publication
  • 2015
    Title Crystallization and preliminary crystallographic analysis of latent, active and recombinantly expressed aurone synthase, a polyphenol oxidase, from Coreopsis grandiflora
    DOI 10.1107/s2053230x15007542
    Type Journal Article
    Author Molitor C
    Journal Acta Crystallographica Section F: Structural Biology Communications
    Pages 746-751
    Link Publication

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