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Biocatalytic cobalt methyl transfer for de/methylation

Biocatalytic cobalt methyl transfer for de/methylation

Wolfgang Kroutil (ORCID: 0000-0002-2151-6394)
  • Grant DOI 10.55776/P30920
  • Funding program Principal Investigator Projects
  • Status ended
  • Start January 1, 2018
  • End April 30, 2021
  • Funding amount € 308,779
  • Project website

Disciplines

Biology (30%); Chemistry (25%); Industrial Biotechnology (45%)

Keywords

    Biocatalysis, Biotransformation, Bio-Methylation, Cobalamin-Dependent Methyltransferases, Bio-Demethylation, C-O bond formation

Abstract Final report

Despite being rather small in mass and size, respectively, introduction or removal of a methyl moiety in an organic molecule can have considerable impacts on its physical and pharmacological properties. Therefore, methylation and demethylation are highly targeted reactions in terms of the industrial syn- thesis of active ingredients, chemical products as well as intermediates. However, conventional chem- ical methods usually rely on the use of hazardous reagents, and the development of more sustainable strategies is strongly desired. Thus, the utilization of bacterial vitamin B12-dependent methyltransfer- ase systems may offer a green alternative. Up to now, only a limited number of respective systems has been characterized so far for demethylation, and their potential for biotechnological purposes still needs to be explored. While the natural methyl transfer reaction involves four different proteins, in this study a novel concept utilizing only two enzymes is investigated. Both demethylation of a donor mol- ecule and methylation of an acceptor are catalyzed by methyltransferase I, while the corrinoid protein serves as shuttle of the methyl group. Since the cobalamin-cofactor is regenerated in the oxygen- sensitive catalytic cycle, it is only necessary in catalytic amounts. The aim of this project is the development and characterization of the reversible methyl transfer cata- lyzed by simplified cobalamin-dependent methyltransferase systems originating from Desulfitobacte- rium hafniense (dhaf), Acetobacterium dehalogenans (vdm) as well as Hyphomicrobium chloro- methanicum (cmu). Besides expression of the respective enzymes, the project focuses on investigation of the substrate scope regarding methylation and demethylation at different chemical functionalities. In order to substantiate the applicability of cobalamin-dependent methyl transfer for the synthesis of pharmacologically active compounds, the biocatalytic formation of the antiepileptic lacosamide and the antidepressant O-desmethylvenlafaxine is pursued as well as mono-methylation of caffeic acid. Furthermore, optimization of reaction parameters, determination of enzymatic selectivity and applica- bility of the enzymatic systems for intramolecular methyl transfer is of high interest. Summarizing, cobalamin-dependent methyltransferase systems can be expected to be highly promis- ing candidates for various biotechnological and synthetic applications achieving methylation and de- methylation reactions in an environmentally acceptable fashion.

Using biocatalysts, thus proteins, for organic chemistry is getting increasing attention. Their use offers significant advantages over conventional chemistry: first of all, they are made from amino acids, thus from renewables and are therefore also biodegradable. Furthermore, the biocatalysts work at mild condition (moderate temperature, atmospheric pressure as well as neutral pH) and in aqueous media. In this project a new method for the transformation of molecules found in lignin but also used as anti-oxidants was developed. For example, the transformation of antioxidants is rather tricky, since these are sensitive molecules (Especially to molecular oxygen but also to extreme pHs). As a possible application, the developed method allowed to prepare the bioactive and important ingredient of olive oil (3-hydroxytyrosol) from inexpensive precursors. Therefore, the development of this biocatalytic methods represents a valuable alternative to perform such important reactions, in sustainable, simple resource efficient and inexpensive manner.

Research institution(s)
  • Universität Graz - 100%

Research Output

  • 88 Citations
  • 12 Publications
  • 1 Disseminations
Publications
  • 2023
    Title Anaerobic demethylation of guaiacyl-derived monolignols enabled by a designed artificial cobalamin methyltransferase fusion enzyme.
    DOI 10.1039/d2ra08005b
    Type Journal Article
    Author Grimm C
    Journal RSC advances
    Pages 5770-5777
    Link Publication
  • 2021
    Title Cobalamin-Dependent Biocatalytic Methyl Transfer: New Enzymes, Substrate Scopes, Protein Structures and Fusion Proteins
    Type PhD Thesis
    Author Christopher Grimm
  • 2021
    Title EXPLORING THE COBALAMIN DEPENDENT DHAF-SYSTEM: INVESTIGATION OF THE REGIOSELECTIVITY, MECHANISM AND CONCEPTS TO SHIFT THE EQUILIBRIUM IN THE DEMETHYLATION REACTION
    Type PhD Thesis
    Author Simona Pompei
  • 2021
    Title Natural Product Diversification by One-Step Biocatalysis using Human P450 3A4
    DOI 10.1002/cctc.202101564
    Type Journal Article
    Author Fessner N
    Journal ChemCatChem
    Link Publication
  • 2021
    Title Cover Feature: Natural Product Diversification by One-Step Biocatalysis using Human P450 3A4 (ChemCatChem 1/2022)
    DOI 10.1002/cctc.202101843
    Type Journal Article
    Author Fessner N
    Journal ChemCatChem
  • 2019
    Title Biocatalytic Methyl Ether Cleavage: Characterization of the Corrinoid-Dependent Methyl Transfer System from Desulfitobacterium hafniense
    DOI 10.1002/adsc.201801590
    Type Journal Article
    Author Richter N
    Journal Advanced Synthesis & Catalysis
    Pages 2688-2695
    Link Publication
  • 2018
    Title Biocatalytic methylation and demethylation via a shuttle catalysis concept involving corrinoid proteins
    DOI 10.1038/s42004-018-0083-2
    Type Journal Article
    Author Farnberger J
    Journal Communications Chemistry
    Pages 82
    Link Publication
  • 2021
    Title Thiols Act as Methyl Traps in the Biocatalytic Demethylation of Guaiacol Derivatives
    DOI 10.1002/anie.202104278
    Type Journal Article
    Author Pompei S
    Journal Angewandte Chemie International Edition
    Pages 16906-16910
    Link Publication
  • 2021
    Title Thiols Act as Methyl Traps in the Biocatalytic Demethylation of Guaiacol Derivatives
    DOI 10.1002/ange.202104278
    Type Journal Article
    Author Pompei S
    Journal Angewandte Chemie
    Pages 17043-17047
    Link Publication
  • 2020
    Title Oxygen-Free Regioselective Biocatalytic Demethylation of Methyl-phenyl Ethers via Methyltransfer Employing Veratrol-O-demethylase
    DOI 10.1021/acscatal.0c02790
    Type Journal Article
    Author Grimm C
    Journal ACS Catalysis
    Pages 10375-10380
    Link Publication
  • 2020
    Title Regioselectivity of Cobalamin-Dependent Methyltransferase Can Be Tuned by Reaction Conditions and Substrate
    DOI 10.1002/cctc.202001296
    Type Journal Article
    Author Pompei S
    Journal ChemCatChem
    Pages 5977-5983
    Link Publication
  • 2019
    Title Cobalamin-Dependent Apparent Intramolecular Methyl Transfer for Biocatalytic Constitutional Isomerization of Catechol Monomethyl Ethers
    DOI 10.1021/acscatal.8b05072
    Type Journal Article
    Author Farnberger J
    Journal ACS Catalysis
    Pages 3900-3905
    Link Publication
Disseminations
  • 2019 Link
    Title Three Minute Thesis Competition
    Type A talk or presentation
    Link Link

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