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Deep Homological Learning

Deep Homological Learning

Roland Kwitt (ORCID: 0000-0001-9947-4465)
  • Grant DOI 10.55776/P31799
  • Funding program Principal Investigator Projects
  • Status ended
  • Start August 1, 2019
  • End June 30, 2023
  • Funding amount € 238,513
  • Project website

Disciplines

Computer Sciences (70%); Mathematics (30%)

Keywords

    Machine Learning, Algebraic Topology, Persistent homology, Deep Learning

Abstract Final report

Over the past decade, concepts from the field of algebraic topology have evolved into computationally practical methods to analyze data from a topological perspective. This is now more broadly known as Topological data analysis (TDA). Presumably, the most widely used tool from TDA is persistent homology, which offers a concise summary of homological information at different scales, such as the number of connected components, holes or voids. While summaries of this kind can be highly informative and potentially useful for learning purposes, the connection between TDA and machine learning is still in its infancy. The goal of this project, Deep Homological Learning, is to develop novel and theoretically well-founded approaches to bridge the gap between TDA and recent advances in learning with deep neural networks. This not only includes (1) leveraging information from persistent homology as an additional data source for learning, but also (2) to learn filtrations for persistent homology from data and (3) to use concepts from algebraic topology to study neural network architectures, their capacity and learning progress. We will contribute to the theoretical foundation of learning with persistent homology and to a deeper understanding of neural network capacity and neural network learning behavior from a topological perspective. Advances along the lines proposed in this project (1) have great potential to offer better guidelines for neural network design, for example, informed by topological properties of the data, and (2) will eventually lead to practically useful diagnostic tools to analyze learning progress.

The project's overall goal was to establish a solid, theoretically well-founded bridge between machine learning methods (neural networks in particular) and the relatively new subfield of Topological Data Analysis, focusing primarily on persistent homology. Throughout the project duration, we realized several of those bridges; most notably, we (1) introduced novel construction schemes for so-called "barcode vectorizations", i.e., representations of the prevalent summary representation of topological features in data (barcodes), that can readily be used as novel input layers to neural networks, and (2) we successfully demonstrated that one can use persistent homology during end-to-end training of neural networks, e.g., to promote specific topological properties of a network's internal representation of the data. The latter point, in fact, opened up the path to novel regularizers and established a way forward to study generalization in neural networks from a topological perspective in the future.

Research institution(s)
  • Universität Salzburg - 100%
International project participants
  • Ulrich Bauer, Technische Universität München - Germany
  • Peter Bubenik, University of Florida - USA
  • Marc Niethammer, University of North Carolina at Chapel Hill - USA

Research Output

  • 95 Citations
  • 19 Publications
  • 1 Datasets & models
  • 2 Disseminations
Publications
  • 2021
    Title Dissecting Supervised Contrastive Learning
    DOI 10.48550/arxiv.2102.08817
    Type Preprint
    Author Graf F
  • 2021
    Title ICON: Learning Regular Maps Through Inverse Consistency
    DOI 10.48550/arxiv.2105.04459
    Type Preprint
    Author Greer H
  • 2022
    Title On Measuring the Excess Capacity of Neural Networks
    Type Conference Proceeding Abstract
    Author Graf F
    Conference Advances in Neural Information Processing Systems (NeurIPS)
    Pages 10164--10178
    Link Publication
  • 2022
    Title $\texttt{GradICON}$: Approximate Diffeomorphisms via Gradient Inverse Consistency
    DOI 10.48550/arxiv.2206.05897
    Type Preprint
    Author Tian L
  • 2019
    Title Metric Learning for Image Registration
    DOI 10.1109/cvpr.2019.00866
    Type Conference Proceeding Abstract
    Author Niethammer M
    Pages 8455-8464
    Link Publication
  • 2019
    Title Metric Learning for Image Registration
    DOI 10.48550/arxiv.1904.09524
    Type Preprint
    Author Niethammer M
  • 2019
    Title Connectivity-Optimized Representation Learning via Persistent Homology
    DOI 10.48550/arxiv.1906.09003
    Type Preprint
    Author Hofer C
  • 2020
    Title Graph Filtration Learning
    Type Conference Proceeding Abstract
    Author Graf F
    Conference Proceedings of the 37th International Conference on Machine Learning
    Pages 4314-4323
    Link Publication
  • 2020
    Title Topologically Densified Distributions
    Type Conference Proceeding Abstract
    Author Graf F
    Conference Proceedings of the 37th International Conference on Machine Learning
    Pages 4304-4313
    Link Publication
  • 2020
    Title A shooting formulation of deep learning
    Type Conference Proceeding Abstract
    Author Kwitt R
    Conference Advances in Neural Information Processing Systems (NeurIPS)
    Pages 11828--11838
    Link Publication
  • 2020
    Title A Shooting Formulation of Deep Learning
    DOI 10.48550/arxiv.2006.10330
    Type Preprint
    Author Vialard F
  • 2023
    Title Inverse Consistency byConstruction forMultistep Deep Registration; In: Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part X
    DOI 10.1007/978-3-031-43999-5_65
    Type Book Chapter
    Publisher Springer Nature Switzerland
  • 2023
    Title Inverse Consistency by Construction for Multistep Deep Registration
    DOI 10.48550/arxiv.2305.00087
    Type Preprint
    Author Greer H
    Link Publication
  • 2019
    Title Learning Representations of Persistence Barcodes
    Type Journal Article
    Author Hofer C
    Journal Journal of Machine Learning Research
    Pages 1-45
    Link Publication
  • 2019
    Title Connectivity-Optimized Representation Learning via Persistent Homology
    Type Conference Proceeding Abstract
    Author Hofer C
    Conference Proceedings of the 36th International Conference on Machine Learning
    Pages 2751-2760
    Link Publication
  • 2021
    Title Topological Attention for Time Series Forecasting
    Type Conference Proceeding Abstract
    Author Graf F
    Conference Advances in Neural Information Processing Systems (NeurIPS)
    Pages 24871--24882
    Link Publication
  • 2021
    Title Dissecting Supervised Contrastive Learning
    Type Conference Proceeding Abstract
    Author Graf F
    Conference Proceedings of the 38th International Conference on Machine Learning
    Pages 3821-3830
    Link Publication
  • 2021
    Title ICON: Learning Regular Maps Through Inverse Consistency
    DOI 10.1109/iccv48922.2021.00338
    Type Conference Proceeding Abstract
    Author Greer H
    Pages 3376-3385
    Link Publication
  • 2023
    Title GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency.
    DOI 10.1109/cvpr52729.2023.01734
    Type Journal Article
    Author Greer H
    Journal Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition
    Pages 18084-18094
Datasets & models
  • 2020 Link
    Title torch-ph
    Type Computer model/algorithm
    Public Access
    Link Link
Disseminations
  • 2020 Link
    Title Workshop Organization (NeurIPS)
    Type Participation in an activity, workshop or similar
    Link Link
  • 2022 Link
    Title Workshop Organization (Biannual Austrian TDA Meeting)
    Type Participation in an activity, workshop or similar
    Link Link

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