Development of c-RAF degraders to probe KRAS mutant cancers
Development of c-RAF degraders to probe KRAS mutant cancers
Disciplines
Biology (10%); Chemistry (50%); Medical-Theoretical Sciences, Pharmacy (40%)
Keywords
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Cancer,
RAF1,
Protein Degradation,
KRAS,
Chemical Biology,
PROTAC
Cancer is one of the main causes of death in the Western world. It is a disease that is caused by mutations in genes that lead to unlimited and uncontrolled proliferation and cell growth. Some of those genes are mutated in many different cancer types, and intense research has led us to understand the underlying mechanisms of cancer development. One of those genes is called the Kirsten Rat Sarcoma Viral Oncogene Homolog or short KRAS, and is mutated in about a quarter of the most aggressive cancer types including lung and pancreatic cancer. Despite intense efforts, it has however not been feasible to develop drugs that inhibit the function of the KRAS protein or any of the molecular processes it switches on. As a consequence, cancers that are caused by KRAS mutations have a dismal clinical prognosis and very high mortality rates. However, we have recently innovated a novel type of therapeutics. While traditional medicines block malfunctioning proteins simply by binding to them, our approach earmarks unwanted proteins for the degradation by a cellular machinery called the proteasome. Based on the design of our drugs, this specialized cellular disposal system recognizes unwanted proteins, which consequently leads to their rapid degradation and removal. Therefore, our approach, also called target protein degradation is capable of completely eliminating disease-relevant proteins instead of just blocking some of their functions. In this project, we propose to develop novel drugs that eliminate a critical downstream effector of mutant KRAS in lung and pancreatic cancer. This effector, called c-RAF is itself rarely mutated in cancer, but it was shown that genetic deletion of c-RAF leads to a regression and shrinkage of KRAS- mutant tumors in mice. We now want to test if we can similarly kill cancer cells that harbor KRAS mutations by chemically inducing the degradation and elimination of c-RAF. Moreover, we want to understand why KRAS mutant cancer cells are dependent on the c-RAF protein, and if we can further augment the effect of c-RAF degraders by combining them with other cancer drugs that are either already in the clinic, or in clinical investigation. Through this proposal, we hope to develop and validate novel and innovative drug-candidates for the treatment of incurable cancers, and to contribute to an improved understanding of the molecular mechanisms of the Achilles heel of KRAS mutant cancers.
Research Output
- 801 Citations
- 19 Publications
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2025
Title Inhibition of OSBP blocks retrograde trafficking by inducing partial Golgi degradation. DOI 10.1038/s41589-024-01653-x Type Journal Article Author Depta L Journal Nature chemical biology Pages 203-214 -
2025
Title Orpinolide disrupts a leukemic dependency on cholesterol transport by inhibiting OSBP. DOI 10.1038/s41589-024-01614-4 Type Journal Article Author Cigler M Journal Nature chemical biology Pages 193-202 -
2024
Title Targeted protein degradation via intramolecular bivalent glues DOI 10.1038/s41586-024-07089-6 Type Journal Article Author Hsia O Journal Nature Pages 204-211 Link Publication -
2021
Title Identification and selectivity profiling of small-molecule degraders via multi-omics approaches DOI 10.1016/j.chembiol.2021.03.007 Type Journal Article Author Scholes N Journal Cell Chemical Biology Pages 1048-1060 Link Publication -
2020
Title Rational discovery of molecular glue degraders via scalable chemical profiling DOI 10.1038/s41589-020-0594-x Type Journal Article Author Mayor-Ruiz C Journal Nature Chemical Biology Pages 1199-1207 Link Publication -
2022
Title Charting functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders DOI 10.1101/2022.04.14.488316 Type Preprint Author Hanzl A Pages 2022.04.14.488316 Link Publication -
2023
Title Selective inhibition of OSBP blocks retrograde trafficking by inducing partial Golgi degradation DOI 10.1101/2023.04.01.534865 Type Preprint Author He N Pages 2023.04.01.534865 Link Publication -
2023
Title Orpinolide disrupts a leukemic dependency on cholesterol transport by inhibiting the oxysterol-binding protein OSBP DOI 10.1101/2023.03.15.532743 Type Preprint Author Cigler M Pages 2023.03.15.532743 Link Publication -
2024
Title Degradome analysis to identify direct protein substrates of small-molecule degraders DOI 10.1101/2024.01.28.577572 Type Preprint Author Jochem M Pages 2024.01.28.577572 Link Publication -
2024
Title Degradome analysis to identify direct protein substrates of small-molecule degraders DOI 10.1016/j.chembiol.2024.10.007 Type Journal Article Author Jochem M Journal Cell Chemical Biology Link Publication -
2024
Title Discovery of a DCAF11-dependent cyanoacrylamide-containing covalent degrader of BET-proteins DOI 10.1016/j.bmcl.2024.129779 Type Journal Article Author Tin G Journal Bioorganic & Medicinal Chemistry Letters Pages 129779 Link Publication -
2023
Title Discovery of a Drug-like, Natural Product-Inspired DCAF11 Ligand Chemotype DOI 10.26434/chemrxiv-2023-zmh4f Type Preprint Author Xie J -
2023
Title E3-Specific Degrader Discovery by Dynamic Tracing of Substrate Receptor Abundance DOI 10.1021/jacs.2c10784 Type Journal Article Author Hanzl A Journal Journal of the American Chemical Society Pages 1176-1184 Link Publication -
2023
Title Advancing Targeted Protein Degradation via Multiomics Profiling and Artificial Intelligence DOI 10.1021/jacs.2c11098 Type Journal Article Author Duran-Frigola M Journal Journal of the American Chemical Society Pages 2711-2732 Link Publication -
2023
Title Targeted protein degradation via intramolecular bivalent glues DOI 10.1101/2023.02.14.528511 Type Preprint Author Hsia O Pages 2023.02.14.528511 Link Publication -
2023
Title Discovery of a Drug-like, Natural Product-Inspired DCAF11 Ligand Chemotype DOI 10.1038/s41467-023-43657-6 Type Journal Article Author Xue G Journal Nature Communications Pages 7908 Link Publication -
2023
Title Discovery of Molecular Glue Degraders via Isogenic Morphological Profiling DOI 10.1021/acschembio.3c00598 Type Journal Article Author Ng A Journal ACS Chemical Biology Pages 2464-2473 Link Publication -
2022
Title E3-specific degrader discovery by dynamic tracing of substrate receptor abundance DOI 10.1101/2022.10.10.511612 Type Preprint Author Hanzl A Pages 2022.10.10.511612 Link Publication -
2022
Title Functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders DOI 10.1038/s41589-022-01177-2 Type Journal Article Author Hanzl A Journal Nature Chemical Biology Pages 323-333 Link Publication