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Development of c-RAF degraders to probe KRAS mutant cancers

Development of c-RAF degraders to probe KRAS mutant cancers

Georg Winter (ORCID: 0000-0001-6606-1437)
  • Grant DOI 10.55776/P32125
  • Funding program Principal Investigator Projects
  • Status ended
  • Start September 1, 2019
  • End August 31, 2023
  • Funding amount € 557,338

Disciplines

Biology (10%); Chemistry (50%); Medical-Theoretical Sciences, Pharmacy (40%)

Keywords

    Cancer, RAF1, Protein Degradation, KRAS, Chemical Biology, PROTAC

Abstract

Cancer is one of the main causes of death in the Western world. It is a disease that is caused by mutations in genes that lead to unlimited and uncontrolled proliferation and cell growth. Some of those genes are mutated in many different cancer types, and intense research has led us to understand the underlying mechanisms of cancer development. One of those genes is called the Kirsten Rat Sarcoma Viral Oncogene Homolog or short KRAS, and is mutated in about a quarter of the most aggressive cancer types including lung and pancreatic cancer. Despite intense efforts, it has however not been feasible to develop drugs that inhibit the function of the KRAS protein or any of the molecular processes it switches on. As a consequence, cancers that are caused by KRAS mutations have a dismal clinical prognosis and very high mortality rates. However, we have recently innovated a novel type of therapeutics. While traditional medicines block malfunctioning proteins simply by binding to them, our approach earmarks unwanted proteins for the degradation by a cellular machinery called the proteasome. Based on the design of our drugs, this specialized cellular disposal system recognizes unwanted proteins, which consequently leads to their rapid degradation and removal. Therefore, our approach, also called target protein degradation is capable of completely eliminating disease-relevant proteins instead of just blocking some of their functions. In this project, we propose to develop novel drugs that eliminate a critical downstream effector of mutant KRAS in lung and pancreatic cancer. This effector, called c-RAF is itself rarely mutated in cancer, but it was shown that genetic deletion of c-RAF leads to a regression and shrinkage of KRAS- mutant tumors in mice. We now want to test if we can similarly kill cancer cells that harbor KRAS mutations by chemically inducing the degradation and elimination of c-RAF. Moreover, we want to understand why KRAS mutant cancer cells are dependent on the c-RAF protein, and if we can further augment the effect of c-RAF degraders by combining them with other cancer drugs that are either already in the clinic, or in clinical investigation. Through this proposal, we hope to develop and validate novel and innovative drug-candidates for the treatment of incurable cancers, and to contribute to an improved understanding of the molecular mechanisms of the Achilles heel of KRAS mutant cancers.

Research institution(s)
  • CeMM – Forschungszentrum für Molekulare Medizin GmbH - 100%
International project participants
  • Stefan Knapp, Johann Wolfgang Goethe Universität Frankfurt am Main - Germany
  • Mariano Barbacid, Centro National de Investigaciones Oncologicas - Spain

Research Output

  • 389 Citations
  • 14 Publications
Publications
  • 2024
    Title Targeted protein degradation via intramolecular bivalent glues.
    DOI 10.1038/s41586-024-07089-6
    Type Journal Article
    Author Hinterndorfer M
    Journal Nature
    Pages 204-211
  • 2025
    Title Inhibition of OSBP blocks retrograde trafficking by inducing partial Golgi degradation.
    DOI 10.1038/s41589-024-01653-x
    Type Journal Article
    Author Depta L
    Journal Nature chemical biology
    Pages 203-214
  • 2025
    Title Orpinolide disrupts a leukemic dependency on cholesterol transport by inhibiting OSBP.
    DOI 10.1038/s41589-024-01614-4
    Type Journal Article
    Author Cigler M
    Journal Nature chemical biology
    Pages 193-202
  • 2021
    Title Identification and selectivity profiling of small-molecule degraders via multi-omics approaches
    DOI 10.1016/j.chembiol.2021.03.007
    Type Journal Article
    Author Scholes N
    Journal Cell Chemical Biology
    Pages 1048-1060
    Link Publication
  • 2022
    Title E3-specific degrader discovery by dynamic tracing of substrate receptor abundance
    DOI 10.1101/2022.10.10.511612
    Type Preprint
    Author Hanzl A
    Pages 2022.10.10.511612
    Link Publication
  • 2022
    Title Functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders
    DOI 10.1038/s41589-022-01177-2
    Type Journal Article
    Author Hanzl A
    Journal Nature Chemical Biology
    Pages 323-333
    Link Publication
  • 2023
    Title Targeted protein degradation via intramolecular bivalent glues
    DOI 10.1101/2023.02.14.528511
    Type Preprint
    Author Hinterndorfer M
  • 2023
    Title Discovery of a Drug-like, Natural Product-Inspired DCAF11 Ligand Chemotype.
    DOI 10.1038/s41467-023-43657-6
    Type Journal Article
    Author Xie J
    Journal Nature communications
    Pages 7908
  • 2023
    Title E3-Specific Degrader Discovery by Dynamic Tracing of Substrate Receptor Abundance.
    DOI 10.1021/jacs.2c10784
    Type Journal Article
    Author Barone E
    Journal Journal of the American Chemical Society
    Pages 1176-1184
  • 2023
    Title Advancing Targeted Protein Degradation via Multiomics Profiling and Artificial Intelligence.
    DOI 10.1021/jacs.2c11098
    Type Journal Article
    Author Cigler M
    Journal Journal of the American Chemical Society
    Pages 2711-2732
  • 2023
    Title Discovery of Molecular Glue Degraders via Isogenic Morphological Profiling.
    DOI 10.1021/acschembio.3c00598
    Type Journal Article
    Author Ng A
    Journal ACS chemical biology
    Pages 2464-2473
  • 2023
    Title Discovery of a Drug-like, Natural Product-Inspired DCAF11 Ligand Chemotype
    DOI 10.26434/chemrxiv-2023-zmh4f
    Type Preprint
    Author Xie J
  • 2022
    Title Charting functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders
    DOI 10.1101/2022.04.14.488316
    Type Preprint
    Author Hanzl A
    Pages 2022.04.14.488316
    Link Publication
  • 2020
    Title Rational discovery of molecular glue degraders via scalable chemical profiling
    DOI 10.1038/s41589-020-0594-x
    Type Journal Article
    Author Mayor-Ruiz C
    Journal Nature Chemical Biology
    Pages 1199-1207
    Link Publication

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