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Transition Metal-Analogues of Natural Cobalt-Corrins

Transition Metal-Analogues of Natural Cobalt-Corrins

Bernhard Kräutler (ORCID: 0000-0002-2222-0587)
  • Grant DOI 10.55776/P33059
  • Funding program Principal Investigator Projects
  • Status ended
  • Start April 11, 2020
  • End April 10, 2023
  • Funding amount € 245,962
  • Project website

Disciplines

Biology (10%); Chemistry (90%)

Keywords

    Porphyrinoid, Cobalamin, Cobalt, Vitamin, Transition metal, Organometallic Chemistry

Abstract Final report

The B12-cofactors are metabolic players essential in all three kingdoms of life, including humans and animals, giving them the role of the most broadly relevant organometallic biocatalysts. Exciting recent advances were made in this field on the topics B12-biosynthesis, B12-uptake and metabolism in humans, animals and bacteria, and the biological uses of B12-cofactors in enzymes and in metabolic regulation. Vitamin B12 is a micronutrient indispensable for humans and the only complex natural product dependent upon cobalt. We are intrigued by the specific role and interaction of this transition metal with the complex corrin macrocycle, a unique chemical structure only found in the B12- cofactors and so relevant for Life. The present project is founded on our recently gained access to metal-free B12-derivatives for the rational syntheses of analogues of the B12-cofactors with transition metals other than cobalt, a holy grail in the B12-field. Such B12-analogues may represent metabolically inert structural B12-mimics, among them some exceptional antivitamins B12. These latter are expected to effectively cause B12-deficiency in B12-dependent organisms, generating crucial insights into the metabolic activity of the B12-cofactors. In this contribution to the B12-field the synthesis of novel transition metal analogues of the B12- cofactors are proposed, selected on the basis of their hypothetical structural properties and chemical reactivity. We develop here a rational and direct, chemical biological synthesis approach to such transition metal analogues of the natural cobalt-corrins, applying preparative methods used in related fields, but hardly explored in the B12-area. We will study the chemistry of non-cobalt transition metal-ions, when bound to the unique natural corrin ligand. This work will provide first insights into the coordination chemistry of such metal-ions bound by natural corrins, and open up new means for studying the molecular basis of the biological roles of B12- cofactors. Modern spectroscopic, crystallographic and electro-chemical methods will be used for the characterization of the new B12-analogues and of their biomimetic molecular features. New insights into the bio-macromolecular interactions of B12-cofactors, into hypothetical modes of action of B12-dependent enzymatic transformations and into the molecular mechanisms of B12-dependent gene regulation are expected from the further planned collaborative biochemical, biological and bio-structural studies, using our metal analogues. By opening up a new horizon for the B12-field the proposed studies will provide the researchers involved with experimental expertise and training at the state-of-the-art level in an exciting exploration of a hardly touched area in chemistry and chemical biology, embedded in a collaborative, interdisciplinary research environment.

Transition Metal-Analogues of Natural Cobalt-Corrins - Chemistry of Metal-Corrins, Antivitamins B12 and other B12-Mimics (P-33059) B12-cofactors perhaps represent the most broadly relevant organometallic biocatalysts and are essential for life in every one of its three kingdoms. This project is a contribution to the particular field of vitamin B12, an indispensable micronutrient for humans and animals. In this wider research context, we have begun to realize an 'old dream' in the B12-field, the study of metal-free and transition metal analogues of the B12-cofactors, by finding an unprecedented, rational and widely applicable synthetic access to some of them. Well-designed transition metal analogues of B12 may primarily behave as antivitamins B12, metabolically inert structural B12-cofactor mimics that induce B12-deficiency in humans, animals and other B12-dependent organisms. The use of such antivitamins B12 in studies of B12-biosynthesis pathways, of mechanisms of B12-uptake and metabolism, of the function of B12-cofactors in enzymes and in gene regulation promises to become an area for exciting discoveries. Insights gained with antivitamins B12 may also help to learn about the chemical foundation of the cobalt-coordinated corrinoid B12-cofactors. The availability of specific metal free ligands of the B12-cofactors from biological and newly explored chemical synthesis has provided rational synthetic routes to transition metal analogues of cobalt-containing natural corrinoids and B12-biosynthesis intermediates. As further contributions to the chemistry of non-cobalt transition metal-ions bound to natural corrin ligands, selected rhodium- and copper-corrins were prepared, and their structures and chemical reactivity studied with modern spectroscopic, mass spectrometric and X-ray crystallographic methods, broadened by complementary ESR-spectroscopic studies. In collaborative biochemical, biological and bio-structural studies transition-metal analogues of vitamin B12-cofactors were tested in cellular transport, enzyme catalysis and gene regulation, revealing essential and basic features of the inhibitory activity of such antivitamins B12. This work has opened preparative paths to novel antivitamins B12, compounds of wide biological and biomedical interest. Our studies have given access not only to promising candidates as novel potential antibiotics or as anti-cancerous agents, but, furthermore, have also allowed for a specific new branch of chemical-biological and structural-biological investigations into the unique molecular basis of the biological roles of the cobalt-based (natural) B12-cofactors.

Research institution(s)
  • Universität Innsbruck - 100%
International project participants
  • Martin Bröring, Technische Universität Braunschweig - Germany
  • Peter Chen, Eidgenössische Technische Hochschule Zürich - Switzerland
  • Markos Koutmos, University of Michigan - USA
  • Roseanne J Sension, University of Michigan - USA
  • Ruma Banerjee, University of Michigan Medical School - USA
  • Martin Warren, University of Kent at Canterbury

Research Output

  • 88 Citations
  • 16 Publications
  • 2 Datasets & models
  • 2 Scientific Awards
Publications
  • 2022
    Title Structure-Based Demystification of Radical Catalysis by a Coenzyme B12 Dependent Enzyme—Crystallographic Study of Glutamate Mutase with Cofactor Homologues
    DOI 10.1002/ange.202208295
    Type Journal Article
    Author Gruber K
    Journal Angewandte Chemie
    Link Publication
  • 2022
    Title Structure-Based Demystification of Radical Catalysis by a Coenzyme B12 Dependent Enzyme—Crystallographic Study of Glutamate Mutase with Cofactor Homologues
    DOI 10.1002/anie.202208295
    Type Journal Article
    Author Gruber K
    Journal Angewandte Chemie International Edition
    Link Publication
  • 2023
    Title Hydrogenobinamide and nibinamide - Metal-free ligand and Ni(II)-analogue of the vitamin B12 precursor cobinamide
    DOI 10.1142/s1088424623500463
    Type Journal Article
    Author Deery E
    Journal Journal of Porphyrins and Phthalocyanines
    Link Publication
  • 2023
    Title Solution, Crystal and in Silico Structures of the Organometallic Vitamin B 12 -Derivative Acetylcobalamin and of its Novel Rhodium-Analogue Acetylrhodibalamin
    DOI 10.1002/hlca.202200158
    Type Journal Article
    Author Kieninger C
    Journal Helvetica Chimica Acta
    Link Publication
  • 2023
    Title Cobalt enzymes; In: Comprehensive Inorganic Chemistry III
    DOI 10.1016/b978-0-12-823144-9.00146-1
    Type Book Chapter
    Publisher Elsevier
    Link Publication
  • 2020
    Title Replacement of the Cobalt Center of Vitamin B12 by Nickel: Nibalamin and Nibyric Acid Prepared from Metal-Free B12 Ligands Hydrogenobalamin and Hydrogenobyric Acid
    DOI 10.1002/anie.202008407
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie International Edition
    Pages 20129-20136
    Link Publication
  • 2020
    Title Replacement of the Cobalt Center of Vitamin B12 by Nickel: Nibalamin and Nibyric Acid Prepared from Metal-Free B12 Ligands Hydrogenobalamin and Hydrogenobyric Acid
    DOI 10.1002/ange.202008407
    Type Journal Article
    Author Kieninger C
    Journal Angewandte Chemie
    Pages 20304-20311
    Link Publication
  • 2021
    Title Surprising Homolytic Gas Phase Co-C Bond Dissociation Energies of Organometallic Aryl-Cobinamides Reveal Notable Non-Bonded Intramolecular Interactions
    DOI 10.1002/chem.202004589
    Type Journal Article
    Author Tsybizova A
    Journal Chemistry – A European Journal
    Pages 7252-7264
    Link Publication
  • 2022
    Title Structural Insights into the Very Low Activity of the Homocoenzyme B12 Adenosylmethylcobalamin in Coenzyme B12-Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase
    DOI 10.1002/chem.202202196
    Type Journal Article
    Author Shibata N
    Journal Chemistry – A European Journal
  • 2022
    Title Antivitamins B12
    DOI 10.1016/bs.vh.2022.01.003
    Type Book Chapter
    Author Kräutler B
    Publisher Elsevier
    Pages 221-240
  • 2022
    Title 15.04 Bioorganometallic Chemistry of Vitamin B12-Derivatives
    DOI 10.1016/b978-0-12-820206-7.00014-7
    Type Book Chapter
    Author Kräutler B
    Publisher Elsevier
    Pages 73-95
  • 2022
    Title Antivitamins B12: Synthesis and application as inhibitory ligand of the B12-tailoring enzyme CblC
    DOI 10.1016/bs.mie.2021.12.016
    Type Book Chapter
    Author Ruetz M
    Publisher Elsevier
    Pages 157-178
  • 2023
    Title Cryogenic Ion Vibrational Predissociation (CIVP) Spectroscopy of Aryl Cobinamides in the Gas Phase: How Good Are the Calculations for Vitamin B12 Derivatives?
    Type Journal Article
    Author Fritsche L
    Journal Journal of the American Chemical Society
    Pages 19561-19570
    Link Publication
  • 2020
    Title Antivitamins B12—Some Inaugural Milestones
    DOI 10.1002/chem.202003788
    Type Journal Article
    Author Kräutler B
    Journal Chemistry – A European Journal
    Pages 15438-15445
    Link Publication
  • 2020
    Title Synthesis, Spectral Characterization and Crystal Structure of Chlororhodibalamin: A Synthesis Platform for Rhodium Analogues of Vitamin B12 and for Rh-Based Antivitamins B12
    DOI 10.1055/s-0040-1707288
    Type Journal Article
    Author Kräutler B
    Journal Synthesis
    Pages 332-337
    Link Publication
  • 2025
    Title H/D-Isotope sensitive dual fluorescence of the corrin-ligand of vitamin B 12
    DOI 10.1039/d4cc06373b
    Type Journal Article
    Author Jockusch S
    Journal Chemical Communications
Datasets & models
  • 2023 Link
    Title Crystal structure data
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure data
    Type Database/Collection of data
    Public Access
    Link Link
Scientific Awards
  • 2023
    Title Eschenmoser Lecture at the Laboratory of Organic Chemistry ETH Zürich
    Type Research prize
    Level of Recognition Continental/International
  • 2023
    Title keynote lecture
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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