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Control of multipotency in neural crest in health or disease

Igor Igorevich Adameyko (ORCID: 0000-0001-5471-0356)
  • Grant DOI 10.55776/P34136
  • Funding program Principal Investigator Projects
  • Status Ended
  • Start May 1, 2021
  • End April 30, 2026
  • Funding amount € 387,383

Disciplines

Biology (30%); Computer Sciences (50%); Medical-Theoretical Sciences, Pharmacy (20%)

Keywords

  • Neural Crest,
  • Multipotency,
  • Development,
  • Clonality,
  • Single Cell Tramscriptomics
Abstract Final report

Stem cells in the embryo can become almost any type of cell, but ultimately decide their fate by communicating with other cells. On this basis, the realization of the multipotency can be individual or collective. In the case of individual multipotency, all individual stem or progenitor cells give rise to similar broad-spectrum progeny with a similar lineage structure. Contrary to this, in the case of collective multipotency, individual precursors make decisions that limit fate at an early stage, although they could take any path, which only covers a part of the spectrum of subsequent fates. In such case, the generation of the full spectrum of downstream fates is achieved through a complex distribution of overlapping and non-overlapping fate constraints within a tribe population. Understanding how cell signals drive the fate of stem cells could influence the treatment of developmental disorders and cancer in children. Neural crest cells (NCC), which primarily contribute to the formation of the face, heart and peripheral nervous system, are highly multipotent and therefore a perfect model system for investigating limitations and decisions of a cell fate. Our preliminary data suggest that cells in the neural crest operate the collective multipotency model, which might be responsible for the robustness of our embryonic development. Here we will examine whether the multipotency of the neural crest works according to the population vs. individual model. Next, we will examine how the flexibility of clonal structures ensures robustness of the development and enables one to withstand stem cell insufficiency in alcohol syndrome or other congenital abnormalities.

How does a tiny group of embryonic cells generate the astonishing diversity of tissues that form the vertebrate head? This question lies at the heart of Igor Adameyko's research on the neural crest, a unique population of cells often referred to as the "fourth germ layer" because of its extraordinary ability to produce numerous cell types throughout the body. For decades, scientists viewed neural crest cells as individually multipotent "super-cells," each capable of producing almost any derivative of the nervous system, face, pigment system or peripheral organs. However, this classical picture left many unanswered questions. If every neural crest cell possesses unlimited potential, why do individual cells so often follow preferred developmental trajectories? And how does the embryo achieve such robust and reproducible construction of the head despite the enormous complexity involved? Igor Adameyko's laboratory has proposed a new paradigm: collective multipotency. Rather than acting as independent universal stem cells, neural crest cells appear to operate as members of coordinated groups. Individual cells possess biases toward certain developmental fates, but collectively these groups retain the full developmental potential required to build complex organs and tissues. To uncover these principles, the laboratory developed innovative approaches that combine genetic lineage tracing, single-cell genomics and computational analyses. One particularly powerful strategy involved the creation of clonal embeddings-a new way of visualizing and mapping the developmental trajectories of thousands of related cells simultaneously. These analyses revealed that neural crest cells are not equivalent to one another. Instead, individual cells exhibit reproducible tendencies, or biases, toward generating specific cell types such as neurons, glial cells, pigment cells or skeletal tissues. Remarkably, these biases do not represent limitations. Rather, they are features of a cooperative system. Neural crest cells work together as a population, distributing developmental tasks among themselves while preserving the overall flexibility needed to construct the vertebrate head. In this view, multipotency is no longer an attribute of single cells but an emergent property of an interacting cellular community. This discovery fundamentally changes how scientists think about embryonic development. It suggests that the embryo solves a difficult engineering problem through division of labor: instead of relying on identical "master cells," it deploys groups of partially specialized cells that cooperate to generate robust and adaptable outcomes. Such an organization may also explain the extraordinary evolutionary success of vertebrates, whose heads contain highly integrated combinations of bones, nerves, sensory organs and connective tissues. The implications extend far beyond developmental biology. Understanding collective multipotency may help explain the origins of congenital craniofacial malformations, improve regenerative medicine approaches and shed light on diseases such as neuroblastoma, melanoma and peripheral nerve tumors that arise from neural crest derivatives.

Research institution(s)
  • Medizinische Universität Wien - 100%
Project participants
  • Maria Eleni Kastriti, Medizinische Universität Wien , national collaboration partner
International project participants
  • Emma Andersson, Karolinska Institutet - Sweden
  • Peter Kharchenko, Harvard Medical School - USA

Research Output

  • 307 Citations
  • 24 Publications
  • 2 Methods & Materials
  • 3 Datasets & models
Publications
  • 2026
    Title Ribosomal modifications are associated with mesenchymal fate selection in the neural crest lineage.
    DOI 10.1038/s41467-026-70375-6
    Type Journal Article
    Author Poverennaya I
    Journal Nature communications
  • 2025
    Title A competition model of multilineage priming and cell-fate decisions
    DOI 10.1016/j.celrep.2025.116690
    Type Journal Article
    Author Steinschaden T
    Journal Cell Reports
    Pages 116690
    Link Publication
  • 2025
    Title ß-catenin-driven endomesoderm specification is a Bilateria-specific novelty
    DOI 10.1038/s41467-025-57109-w
    Type Journal Article
    Author Lebedeva T
    Journal Nature Communications
    Pages 2476
    Link Publication
  • 2025
    Title Boosting multiplexing capabilities for error-robust spatial transcriptomic methods using a set exchange approach
    DOI 10.1126/sciadv.adr4026
    Type Journal Article
    Author Boström J
    Journal Science Advances
    Link Publication
  • 2025
    Title Directing stem cell differentiation by chromatin state approximation
    DOI 10.1101/2025.04.24.650451
    Type Preprint
    Author Montano-Gutierrez L
    Pages 2025.04.24.650451
    Link Publication
  • 2025
    Title The role of microheterogeneity in cell fate decisions in neural progenitors and neural crest
    DOI 10.1016/j.conb.2025.103031
    Type Journal Article
    Author Kamenev D
    Journal Current Opinion in Neurobiology
    Pages 103031
    Link Publication
  • 2025
    Title SOX2+ sustentacular cells are stem cells of the postnatal adrenal medulla
    DOI 10.1038/s41467-024-55289-5
    Type Journal Article
    Author Santambrogio A
    Journal Nature Communications
    Pages 16
    Link Publication
  • 2025
    Title Melanocytes and photosensory organs share a common ancestry that illuminates the origins of the neural crest
    DOI 10.1038/s42003-025-08502-0
    Type Journal Article
    Author Fatieieva Y
    Journal Communications Biology
    Pages 1092
    Link Publication
  • 2026
    Title Coral growth, retraction, defense, and regenerative strategies revealed by live microCT
    DOI 10.1126/sciadv.aee3183
    Type Journal Article
    Author Araslanova K
    Journal Science Advances
  • 2026
    Title Clonal embeddings allow exploratory analysis of lineage-resolved single-cell data
    DOI 10.64898/2026.04.30.720820
    Type Preprint
    Author Isaev S
  • 2022
    Title scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data
    DOI 10.1093/bioinformatics/btac746
    Type Journal Article
    Author Faure L
    Journal Bioinformatics
    Link Publication
  • 2024
    Title The chromatin regulator Ankrd11 controls cardiac neural crest cell-mediated outflow tract remodeling and heart function
    DOI 10.1038/s41467-024-48955-1
    Type Journal Article
    Author Kibalnyk Y
    Journal Nature Communications
    Pages 4632
    Link Publication
  • 2024
    Title Spatial Dynamics of the Developing Human Heart
    DOI 10.1101/2024.03.12.584577
    Type Preprint
    Author Lázár E
    Pages 2024.03.12.584577
    Link Publication
  • 2024
    Title Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases
    DOI 10.1101/2024.11.15.623687
    Type Preprint
    Author Erickson A
    Pages 2024.11.15.623687
    Link Publication
  • 2024
    Title Motor innervation directs the correct development of the mouse sympathetic nervous system
    DOI 10.1038/s41467-024-51290-0
    Type Journal Article
    Author Erickson A
    Journal Nature Communications
    Pages 7065
    Link Publication
  • 2023
    Title Progressive development and heterogeneity of the neural crest lineage and spiral ganglion neurons
    Type PhD Thesis
    Author Louis Faure
    Link Publication
  • 2022
    Title The transcriptional portraits of the neural crest at the individual cell level
    DOI 10.1016/j.semcdb.2022.02.017
    Type Journal Article
    Author Erickson A
    Journal Seminars in Cell & Developmental Biology
    Pages 68-80
    Link Publication
  • 2024
    Title Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
    DOI 10.1038/s41593-024-01827-9
    Type Journal Article
    Author Adameyko I
    Journal Nature Neuroscience
    Pages 2278-2291
    Link Publication
  • 2023
    Title The peripheral nervous system
    DOI 10.1242/dev.201164
    Type Journal Article
    Author Murtazina A
    Journal Development
    Link Publication
  • 2023
    Title A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology
    DOI 10.1038/s41467-023-38663-7
    Type Journal Article
    Author Petersen J
    Journal Nature Communications
    Pages 3092
    Link Publication
  • 2023
    Title Motor nerves direct the development of the sympathetic nervous system
    DOI 10.1101/2023.03.17.533145
    Type Preprint
    Author Erickson A
  • 2023
    Title The level of protein in the maternal murine diet modulates the facial appearance of the offspring via mTORC1 signaling
    DOI 10.21203/rs.3.rs-2542333/v1
    Type Preprint
    Author Chagin A
  • 2022
    Title Developmental heterogeneity of embryonic neuroendocrine chromaffin cells and their maturation dynamics
    DOI 10.1101/2022.05.26.493613
    Type Preprint
    Author Akkuratova N
    Pages 2022.05.26.493613
    Link Publication
  • 2021
    Title A vanishing-inertia analysis for finite-dimensional rate-independent systems with nonautonomous dissipation and an application to soft crawlers
    DOI 10.1007/s00526-021-02067-6
    Type Journal Article
    Author Gidoni P
    Journal Calculus of Variations and Partial Differential Equations
    Pages 191
Methods & Materials
  • 2025 Link
    Title Clone2vec machine learning tool for generation and exploration of clonal embeddings
    DOI 10.64898/2026.04.30.720820
    Type Technology assay or reagent
    Public Access
    Link Link
  • 2023 Link
    Title scFates tool for single cell trajectory analysis
    DOI 10.1093/bioinformatics/btac746
    Type Technology assay or reagent
    Public Access
    Link Link
Datasets & models
  • 2025 Link
    Title Boosting multiplexing capabilities for error-robust spatial transcriptomic methods using a set exchange approach
    DOI 10.5061/dryad.zkh1893m5
    Type Database/Collection of data
    Public Access
    Link Link
  • 2025 Link
    Title Cranial neural crest single cell transcriptomics dataset
    DOI 10.1038/s41467-026-70375-6
    Type Database/Collection of data
    Public Access
    Link Link
  • 2023 Link
    Title scFates
    DOI 10.1093/bioinformatics/btac746
    Type Computer model/algorithm
    Public Access
    Link Link

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