• Skip to content (access key 1)
  • Skip to search (access key 7)
FWF — Austrian Science Fund
  • Go to overview page Discover

    • Research Radar
      • Research Radar Archives 1974–1994
    • Discoveries
      • Emmanuelle Charpentier
      • Adrian Constantin
      • Monika Henzinger
      • Ferenc Krausz
      • Wolfgang Lutz
      • Walter Pohl
      • Christa Schleper
      • Elly Tanaka
      • Anton Zeilinger
    • Impact Stories
      • Verena Gassner
      • Wolfgang Lechner
      • Georg Winter
    • scilog Magazine
    • Austrian Science Awards
      • FWF Wittgenstein Awards
      • FWF ASTRA Awards
      • FWF START Awards
      • Award Ceremony
    • excellent=austria
      • Clusters of Excellence
      • Emerging Fields
    • In the Spotlight
      • 40 Years of Erwin Schrödinger Fellowships
      • Quantum Austria
    • Dialogs and Talks
      • think.beyond Summit
    • Knowledge Transfer Events
    • E-Book Library
  • Go to overview page Funding

    • Portfolio
      • excellent=austria
        • Clusters of Excellence
        • Emerging Fields
      • Projects
        • Principal Investigator Projects
        • Principal Investigator Projects International
        • Clinical Research
        • 1000 Ideas
        • Arts-Based Research
        • FWF Wittgenstein Award
      • Careers
        • ESPRIT
        • FWF ASTRA Awards
        • Erwin Schrödinger
        • doc.funds
        • doc.funds.connect
      • Collaborations
        • Specialized Research Groups
        • Special Research Areas
        • Research Groups
        • International – Multilateral Initiatives
        • #ConnectingMinds
      • Communication
        • Top Citizen Science
        • Science Communication
        • Book Publications
        • Digital Publications
        • Open-Access Block Grant
      • Subject-Specific Funding
        • AI Mission Austria
        • Belmont Forum
        • ERA-NET HERA
        • ERA-NET NORFACE
        • ERA-NET QuantERA
        • ERA-NET TRANSCAN
        • Alternative Methods to Animal Testing
        • European Partnership Biodiversa+
        • European Partnership BrainHealth
        • European Partnership ERA4Health
        • European Partnership ERDERA
        • European Partnership EUPAHW
        • European Partnership FutureFoodS
        • European Partnership OHAMR
        • European Partnership PerMed
        • European Partnership Water4All
        • Gottfried and Vera Weiss Award
        • netidee SCIENCE
        • Herzfelder Foundation Projects
        • Quantum Austria
        • Rückenwind Funding Bonus
        • WE&ME Award
        • Zero Emissions Award
      • International Collaborations
        • Belgium/Flanders
        • Germany
        • France
        • Italy/South Tyrol
        • Japan
        • Luxembourg
        • Poland
        • Switzerland
        • Slovenia
        • Taiwan
        • Tyrol–South Tyrol–Trentino
        • Czech Republic
        • Hungary
    • Step by Step
      • Find Funding
      • Submitting Your Application
      • International Peer Review
      • Funding Decisions
      • Carrying out Your Project
      • Closing Your Project
      • Further Information
        • Integrity and Ethics
        • Inclusion
        • Applying from Abroad
        • Personnel Costs
        • PROFI
        • Final Project Reports
        • Final Project Report Survey
    • FAQ
      • Project Phase PROFI
      • Project Phase Ad Personam
      • Expiring Programs
        • Elise Richter and Elise Richter PEEK
        • FWF START Awards
  • Go to overview page About Us

    • Mission Statement
    • FWF Video
    • Values
    • Facts and Figures
    • Annual Report
    • What We Do
      • Research Funding
        • Matching Funds Initiative
      • International Collaborations
      • Studies and Publications
      • Equal Opportunities and Diversity
        • Objectives and Principles
        • Measures
        • Creating Awareness of Bias in the Review Process
        • Terms and Definitions
        • Your Career in Cutting-Edge Research
      • Open Science
        • Open-Access Policy
          • Open-Access Policy for Peer-Reviewed Publications
          • Open-Access Policy for Peer-Reviewed Book Publications
          • Open-Access Policy for Research Data
        • Research Data Management
        • Citizen Science
        • Open Science Infrastructures
        • Open Science Funding
      • Evaluations and Quality Assurance
      • Academic Integrity
      • Science Communication
      • Philanthropy
      • Sustainability
    • History
    • Legal Basis
    • Organization
      • Executive Bodies
        • Executive Board
        • Supervisory Board
        • Assembly of Delegates
        • Scientific Board
        • Juries
      • FWF Office
    • Jobs at FWF
  • Go to overview page News

    • News
    • Press
      • Logos
    • Calendar
      • Post an Event
      • FWF Informational Events
    • Job Openings
      • Enter Job Opening
    • Newsletter
  • Discovering
    what
    matters.

    FWF-Newsletter Press-Newsletter Calendar-Newsletter Job-Newsletter scilog-Newsletter

    SOCIAL MEDIA

    • LinkedIn, external URL, opens in a new window
    • , external URL, opens in a new window
    • Facebook, external URL, opens in a new window
    • Instagram, external URL, opens in a new window
    • YouTube, external URL, opens in a new window

    SCILOG

    • Scilog — The science magazine of the Austrian Science Fund (FWF)
  • elane login, external URL, opens in a new window
  • Scilog external URL, opens in a new window
  • de Wechsle zu Deutsch

  

RNA Biology

RNA Biology

Andrea Barta (ORCID: 0000-0002-8851-406X)
  • Grant DOI 10.55776/W1207
  • Funding program Doctoral Programs
  • Status ended
  • Start June 1, 2007
  • End November 30, 2021
  • Funding amount € 9,034,512
  • Project website

Disciplines

Biology (65%); Medical-Theoretical Sciences, Pharmacy (35%)

Keywords

    Alternative Splicing, RNA editing, RNA localization, Mirna And Sirna In Translational Control, Non-protein coding RNA, Epigenetic gene silencing

Abstract

A focussed doctoral program on "RNA Biology" is planned within the framework of the "International PhD Program on Molecular Life Sciences at the Vienna Biocenter" which is a joint program from the Max F. Perutz Laboratories (Medical University Vienna and University Vienna), the Institute of Molecular Pathology (IMP) and two institutes form the Austrian Academy of Sciences (CeMM and IMBA). Research groups from all these institutions participate in this doctoral program ensuring an excellent coverage of research topics in the field of RNA Biology. The applying faculty participates in several national and international program projects and networks. This will support the PhD students in their research projects and career development as well as bestow them with a broad visibility. This PhD program will offer projects in many aspects of this exciting research field ranging from the problem how proper RNA folding is achieved in nature, how RNA is localized in specialized cells, how the diverse proteome of higher eukaryotes is established by alternative splicing and RNA editing, how small non-coding RNAs exert their function in regulating gene expression and genome stability and how long non-coding RNA are able to silence gene loci and whole chromosomes. The close collaboration of the research groups together with the multidisciplinary setting of the Vienna Biocenter PhD program will be of great benefit for the PhD students, for their scientific education as well as for their future careers.

Consortium
  • Andrea Barta, Medizinische Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Arndt Von Haeseler, Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Isabella Moll, Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Ivo Ludwig Hofacker, Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Javier Martinez Fernandez, Medizinische Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Maria Luisa Cochella, Institut für Molekulare Pathologie - IMP
    consortium member (01.06.2007 - 30.11.2021)
  • Michael F. Jantsch, Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Stefan L. Ameres, Österreichische Akademie der Wissenschaften
    consortium member (01.06.2007 - 30.11.2021)
  • Udo Bläsi, Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
  • Walter Rossmanith, Medizinische Universität Wien
    consortium member (01.06.2007 - 30.11.2021)
Research institution(s)
  • Universität Wien
  • Institut für Molekulare Pathologie - IMP
  • Gregor Mendel Institute of Molecular Plant Biology
  • Universität Wien
  • Universität Wien
  • Universität Wien
  • Medizinische Universität Wien
  • Medizinische Universität Wien
  • IMBA – Institut für Molekulare Biotechnologie GmbH
Project participants
  • Michael D. Nodine, Gregor Mendel Institute of Molecular Plant Biology , associated research partner
  • Boris Görke, Universität Wien , associated research partner
  • Alexander Stark, Institut für Molekulare Pathologie - IMP , associated research partner
  • Julius Brennecke, IMBA – Institut für Molekulare Biotechnologie GmbH , associated research partner

Research Output

  • 60982 Citations
  • 360 Publications
Publications
  • 2024
    Title The FinO/ProQ-like protein PA2582 impacts antimicrobial resistance in Pseudomonas aeruginosa
    DOI 10.3389/fmicb.2024.1422742
    Type Journal Article
    Author Sesso A
    Journal Frontiers in Microbiology
    Pages 1422742
    Link Publication
  • 2021
    Title Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex
    DOI 10.1101/gad.347989.120
    Type Journal Article
    Author Schnabl J
    Journal Genes & Development
    Pages 392-409
    Link Publication
  • 2021
    Title The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms
    DOI 10.1101/2021.11.24.469911
    Type Preprint
    Author Kleinova R
    Pages 2021.11.24.469911
    Link Publication
  • 2021
    Title Specific and Global RNA Regulators in Pseudomonas aeruginosa
    DOI 10.3390/ijms22168632
    Type Journal Article
    Author Pusic P
    Journal International Journal of Molecular Sciences
    Pages 8632
    Link Publication
  • 2021
    Title Gene Expression Profiling of Pseudomonas aeruginosa Upon Exposure to Colistin and Tobramycin
    DOI 10.3389/fmicb.2021.626715
    Type Journal Article
    Author Sesso A
    Journal Frontiers in Microbiology
    Pages 626715
    Link Publication
  • 2021
    Title Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa
    DOI 10.1093/nar/gkab510
    Type Journal Article
    Author Malecka E
    Journal Nucleic Acids Research
    Pages 7075-7087
    Link Publication
  • 2024
    Title A molecular switch orchestrates the nuclear export of human messenger RNA
    DOI 10.1101/2024.03.24.586400
    Type Preprint
    Author Hohmann U
    Pages 2024.03.24.586400
    Link Publication
  • 2024
    Title Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data
    DOI 10.1093/nar/gkae602
    Type Journal Article
    Author Thiel B
    Journal Nucleic Acids Research
    Link Publication
  • 2024
    Title Evolutionary adaptation of an HP1-protein chromodomain integrates chromatin and DNA sequence signals
    DOI 10.7554/elife.93194.3
    Type Journal Article
    Author Baumgartner L
    Journal eLife
    Link Publication
  • 2020
    Title An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype
    DOI 10.1093/nar/gkaa025
    Type Journal Article
    Author Bajad P
    Journal Nucleic Acids Research
    Pages 3286-3303
    Link Publication
  • 2020
    Title ADAR-deficiency perturbs the global splicing landscape in mouse tissues
    DOI 10.1101/gr.256933.119
    Type Journal Article
    Author Kapoor U
    Journal Genome Research
    Link Publication
  • 2020
    Title Distinctive Regulation of Carbapenem Susceptibility in Pseudomonas aeruginosa by Hfq
    DOI 10.3389/fmicb.2020.01001
    Type Journal Article
    Author Sonnleitner E
    Journal Frontiers in Microbiology
    Pages 1001
    Link Publication
  • 2020
    Title Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity
    DOI 10.1038/s41467-020-18693-1
    Type Journal Article
    Author Janisiw E
    Journal Nature Communications
    Pages 4869
    Link Publication
  • 2019
    Title YBEY is an essential biogenesis factor for mitochondrial ribosomes
    DOI 10.1101/2019.12.13.874362
    Type Preprint
    Author Summer S
    Pages 2019.12.13.874362
    Link Publication
  • 2019
    Title 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
    DOI 10.12688/f1000research.18458.1
    Type Journal Article
    Author Thiel B
    Journal F1000Research
    Link Publication
  • 2019
    Title 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
    DOI 10.12688/f1000research.18458.2
    Type Journal Article
    Author Thiel B
    Journal F1000Research
    Link Publication
  • 2021
    Title Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing
    DOI 10.1093/nar/gkaa1260
    Type Journal Article
    Author Fuchs A
    Journal Nucleic Acids Research
    Pages 1133-1151
    Link Publication
  • 2021
    Title A SUMO-dependent regulatory switch connects the piRNA pathway to the heterochromatin machinery in Drosophila
    DOI 10.1101/2021.07.27.453956
    Type Preprint
    Author Andreev V
    Pages 2021.07.27.453956
    Link Publication
  • 2021
    Title Light regulates alternative splicing outcomes via the TOR kinase pathway
    DOI 10.1016/j.celrep.2021.109676
    Type Journal Article
    Author Riegler S
    Journal Cell Reports
    Pages 109676
    Link Publication
  • 2021
    Title A genetic toolkit for studying transposon control in the Drosophila melanogaster ovary
    DOI 10.1101/2021.06.29.450424
    Type Preprint
    Author Elmaghraby M
    Pages 2021.06.29.450424
    Link Publication
  • 2025
    Title Molecular basis of polyadenylated RNA fate determination in the nucleus
    DOI 10.1101/2025.09.16.676470
    Type Preprint
    Author Bugai A
    Pages 2025.09.16.676470
    Link Publication
  • 2025
    Title An ATP-gated molecular switch orchestrates human mRNA export
    DOI 10.1038/s41586-025-09832-z
    Type Journal Article
    Author Hohmann U
    Journal Nature
    Pages 1-9
  • 2025
    Title Substrate and enzyme determinants for recognition by human mitochondrial RNase P
    DOI 10.1093/nar/gkaf1145
    Type Journal Article
    Author Hazisllari E
    Journal Nucleic Acids Research
    Link Publication
  • 2019
    Title Updated phylogeny of Chikungunya virus suggests lineage-specific RNA architecture
    DOI 10.1101/698522
    Type Preprint
    Author De Bernardi Schneider A
    Pages 698522
    Link Publication
  • 2019
    Title The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation
    DOI 10.1038/s41594-019-0270-6
    Type Journal Article
    Author Batki J
    Journal Nature Structural & Molecular Biology
    Pages 720-731
    Link Publication
  • 2019
    Title A Heterochromatin-Specific RNA Export Pathway Facilitates piRNA Production
    DOI 10.1016/j.cell.2019.07.007
    Type Journal Article
    Author Elmaghraby M
    Journal Cell
    Link Publication
  • 2019
    Title VARIFI—Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data
    DOI 10.3390/jpm9010010
    Type Journal Article
    Author Krunic M
    Journal Journal of Personalized Medicine
    Pages 10
    Link Publication
  • 2019
    Title Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains
    DOI 10.1534/g3.118.200789
    Type Journal Article
    Author Fablet M
    Journal G3: Genes, Genomes, Genetics
    Pages 855-865
    Link Publication
  • 2019
    Title Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signalling
    DOI 10.1038/s42255-019-0033-z
    Type Journal Article
    Author Finger F
    Journal Nature Metabolism
    Pages 350-359
    Link Publication
  • 2019
    Title The embryonic transcriptome of Arabidopsis thaliana
    DOI 10.1007/s00497-018-00357-2
    Type Journal Article
    Author Hofmann F
    Journal Plant Reproduction
    Pages 77-91
    Link Publication
  • 2019
    Title The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation
    DOI 10.1101/609693
    Type Preprint
    Author Batki J
    Pages 609693
    Link Publication
  • 2019
    Title MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis
    DOI 10.1101/633735
    Type Preprint
    Author Plotnikova A
    Pages 633735
    Link Publication
  • 2019
    Title Conserved Secondary Structures in Viral mRNAs
    DOI 10.3390/v11050401
    Type Journal Article
    Author Kiening M
    Journal Viruses
    Pages 401
    Link Publication
  • 2022
    Title Panoramix SUMOylation on chromatin connects the piRNA pathway to the cellular heterochromatin machinery
    DOI 10.1038/s41594-022-00721-x
    Type Journal Article
    Author Andreev V
    Journal Nature Structural & Molecular Biology
    Pages 130-142
  • 2022
    Title Assembly principle of a membrane-anchored nuclear pore basket scaffold
    DOI 10.1126/sciadv.abl6863
    Type Journal Article
    Author Cibulka J
    Journal Science Advances
    Link Publication
  • 2022
    Title Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site
    DOI 10.1080/15476286.2022.2058818
    Type Journal Article
    Author Gosavi D
    Journal RNA Biology
    Pages 496-506
    Link Publication
  • 2023
    Title Catabolite repression control protein antagonist, a novel player in Pseudomonas aeruginosa carbon catabolite repression control
    DOI 10.3389/fmicb.2023.1195558
    Type Journal Article
    Author Sonnleitner E
    Journal Frontiers in Microbiology
    Pages 1195558
    Link Publication
  • 2023
    Title The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms
    DOI 10.1093/nar/gkad265
    Type Journal Article
    Author Kleinova R
    Journal Nucleic Acids Research
    Pages 4191-4207
    Link Publication
  • 2023
    Title 3D Feasibility of 2D RNA-RNA Interaction Paths by stepwise Folding Simulations
    DOI 10.1261/rna.079756.123
    Type Journal Article
    Author Beckmann I
    Journal RNA
    Link Publication
  • 2023
    Title RRIkinDP: Targeted RNA–RNA interaction kinetics
    DOI 10.1101/2023.07.28.548983
    Type Preprint
    Author Waldl M
    Pages 2023.07.28.548983
    Link Publication
  • 2023
    Title Cleavage kinetics of human mitochondrial RNase P and contribution of its non-nuclease subunits
    DOI 10.1093/nar/gkad713
    Type Journal Article
    Author Vilardo E
    Journal Nucleic Acids Research
    Pages 10536-10550
    Link Publication
  • 2021
    Title A genetic toolkit for studying transposon control in the Drosophila melanogaster ovary
    DOI 10.1093/genetics/iyab179
    Type Journal Article
    Author Elmaghraby M
    Journal Genetics
    Link Publication
  • 2019
    Title Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions
    DOI 10.1002/cppb.20097
    Type Journal Article
    Author Uhse S
    Journal Current Protocols in Plant Biology
    Link Publication
  • 2019
    Title A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing
    DOI 10.1101/gr.242636.118
    Type Journal Article
    Author Licht K
    Journal Genome Research
    Pages 1453-1463
    Link Publication
  • 2019
    Title Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis
    DOI 10.1016/j.molcel.2019.06.018
    Type Journal Article
    Author Reichholf B
    Journal Molecular Cell
    Link Publication
  • 2019
    Title STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries
    DOI 10.1002/cpmb.105
    Type Journal Article
    Author Neumayr C
    Journal Current Protocols in Molecular Biology
    Link Publication
  • 2024
    Title Evolutionary adaptation of an HP1-protein chromodomain integrates chromatin and DNA sequence signals
    DOI 10.7554/elife.93194
    Type Journal Article
    Author Baumgartner L
    Journal eLife
    Link Publication
  • 2020
    Title YBEY is an essential biogenesis factor for mitochondrial ribosomes
    DOI 10.1093/nar/gkaa148
    Type Journal Article
    Author Summer S
    Journal Nucleic Acids Research
    Pages 9762-9786
    Link Publication
  • 2020
    Title Poly(ADP-ribose) glycohydrolase promotes formation and homology-directed repair of meiotic DNA double-strand breaks independent of its catalytic activity
    DOI 10.1101/2020.03.12.988840
    Type Preprint
    Author Janisiw E
    Pages 2020.03.12.988840
    Link Publication
  • 2020
    Title Adaptor protein RapZ activates endoribonuclease RNase E by protein-protein interaction to cleave a small regulatory RNA
    DOI 10.1261/rna.074047.119
    Type Journal Article
    Author Durica-Mitic S
    Journal RNA
    Link Publication
  • 2010
    Title Nol9 is a novel polynucleotide 5'-kinase involved in ribosomal RNA processing
    DOI 10.1038/emboj.2010.275
    Type Journal Article
    Author Heindl K
    Journal The EMBO Journal
    Pages 4161-4171
    Link Publication
  • 2010
    Title Evolution of metabolic networks: a computational frame-work
    DOI 10.1186/1759-2208-1-4
    Type Journal Article
    Author Flamm C
    Journal Journal of Systems Chemistry
    Pages 4
    Link Publication
  • 2010
    Title Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
    DOI 10.1186/1748-7188-5-37
    Type Journal Article
    Author Kupczok A
    Journal Algorithms for Molecular Biology
    Pages 37
    Link Publication
  • 2010
    Title MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis
    DOI 10.1101/gad.1986710
    Type Journal Article
    Author Nodine M
    Journal Genes & Development
    Pages 2678-2692
    Link Publication
  • 2010
    Title MRE11 and COM1/SAE2 are required for double-strand break repair and efficient chromosome pairing during meiosis of the protist Tetrahymena
    DOI 10.1007/s00412-010-0274-9
    Type Journal Article
    Author Lukaszewicz A
    Journal Chromosoma
    Pages 505-518
  • 2010
    Title Modules for C-terminal epitope tagging of Tetrahymena genes
    DOI 10.1016/j.mimet.2010.07.009
    Type Journal Article
    Author Kataoka K
    Journal Journal of Microbiological Methods
    Pages 342-346
    Link Publication
  • 2010
    Title Target RNA–Directed Trimming and Tailing of Small Silencing RNAs
    DOI 10.1126/science.1187058
    Type Journal Article
    Author Ameres S
    Journal Science
    Pages 1534-1539
    Link Publication
  • 2010
    Title ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction
    DOI 10.1007/978-3-642-15461-4_32
    Type Book Chapter
    Author Dinh H
    Publisher Springer Nature
    Pages 360-367
  • 2010
    Title Hybridization thermodynamics of NimbleGen Microarrays
    DOI 10.1186/1471-2105-11-35
    Type Journal Article
    Author Mueckstein U
    Journal BMC Bioinformatics
    Pages 35
    Link Publication
  • 2010
    Title The Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer
    DOI 10.1126/science.1180616
    Type Journal Article
    Author Murchison E
    Journal Science
    Pages 84-87
    Link Publication
  • 2010
    Title Quantitative detection and typing of hepatitis D virus in human serum by real-time polymerase chain reaction and melting curve analysis
    DOI 10.1016/j.diagmicrobio.2010.02.003
    Type Journal Article
    Author Hofmann J
    Journal Diagnostic Microbiology and Infectious Disease
    Pages 172-179
  • 2010
    Title Genomic SELEX: A discovery tool for genomic aptamers
    DOI 10.1016/j.ymeth.2010.06.004
    Type Journal Article
    Author Zimmermann B
    Journal Methods
    Pages 125-132
    Link Publication
  • 2010
    Title Random Tree-Puzzle Leads to the Yule–Harding Distribution
    DOI 10.1093/molbev/msq212
    Type Journal Article
    Author Vinh L
    Journal Molecular Biology and Evolution
    Pages 873-877
    Link Publication
  • 2010
    Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway
    DOI 10.1073/pnas.1003953107
    Type Journal Article
    Author Zheng K
    Journal Proceedings of the National Academy of Sciences
    Pages 11841-11846
    Link Publication
  • 2010
    Title Identification of an RNase J ortholog in Sulfolobus solfataricus: Implications for 5'-to-3' directional decay and 5'-end protection of mRNA in Crenarchaeota
    DOI 10.1261/rna.2418211
    Type Journal Article
    Author Hasenöhrl D
    Journal RNA
    Pages 99-107
    Link Publication
  • 2010
    Title Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
    DOI 10.1093/nar/gkq032
    Type Journal Article
    Author Lorenz C
    Journal Nucleic Acids Research
    Pages 3794-3808
    Link Publication
  • 2010
    Title Proteome diversification by adenosine to inosine RNA-editing
    DOI 10.4161/rna.7.2.11286
    Type Journal Article
    Author Pullirsch D
    Journal RNA Biology
    Pages 205-212
    Link Publication
  • 2010
    Title An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila
    DOI 10.1038/emboj.2010.212
    Type Journal Article
    Author Olivieri D
    Journal The EMBO Journal
    Pages 3301-3317
    Link Publication
  • 2010
    Title Editorial on alternative splicing and disease
    DOI 10.4161/rna.7.4.12818
    Type Journal Article
    Author Barta A
    Journal RNA Biology
    Pages 388-389
    Link Publication
  • 2010
    Title Reaching complexity through RNA-editing
    DOI 10.4161/rna.7.2.11620
    Type Journal Article
    Author Jantsch M
    Journal RNA Biology
    Pages 191-191
    Link Publication
  • 2010
    Title FACT: Functional annotation transfer between proteins with similar feature architectures
    DOI 10.1186/1471-2105-11-417
    Type Journal Article
    Author Koestler T
    Journal BMC Bioinformatics
    Pages 417
    Link Publication
  • 2010
    Title Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module
    DOI 10.1016/j.cell.2010.04.026
    Type Journal Article
    Author Köhler A
    Journal Cell
    Pages 606-617
    Link Publication
  • 2009
    Title A Phylogenomic Approach to Resolve the Basal Pterygote Divergence
    DOI 10.1093/molbev/msp191
    Type Journal Article
    Author Simon S
    Journal Molecular Biology and Evolution
    Pages 2719-2730
    Link Publication
  • 2009
    Title Neuron-type specific regulation of a 3'UTR through redundant and combinatorially acting cis-regulatory elements
    DOI 10.1261/rna.1931510
    Type Journal Article
    Author Didiano D
    Journal RNA
    Pages 349-363
    Link Publication
  • 2009
    Title Structural Basis for the Interaction between Yeast Spt-Ada-Gcn5 Acetyltransferase (SAGA) Complex Components Sgf11 and Sus12
    DOI 10.1074/jbc.m109.070839
    Type Journal Article
    Author Ellisdon A
    Journal Journal of Biological Chemistry
    Pages 3850-3856
    Link Publication
  • 2009
    Title Histone modifications at human enhancers reflect global cell-type-specific gene expression
    DOI 10.1038/nature07829
    Type Journal Article
    Author Heintzman N
    Journal Nature
    Pages 108-112
    Link Publication
  • 2009
    Title RNA Secondary Structure Analysis Using the Vienna RNA Package
    DOI 10.1002/0471250953.bi1202s26
    Type Journal Article
    Author Hofacker I
    Journal Current Protocols in Bioinformatics
    Pages 12.2.1-12.2.16
  • 2009
    Title An in vitro ES cell imprinting model shows that imprinted expression of the Igf2r gene arises from an allele-specific expression bias
    DOI 10.1242/dev.032060
    Type Journal Article
    Author Latos P
    Journal Development
    Pages 437-448
    Link Publication
  • 2009
    Title Coherent but overlapping expression of microRNAs and their targets during vertebrate development
    DOI 10.1101/gad.1745709
    Type Journal Article
    Author Shkumatava A
    Journal Genes & Development
    Pages 466-481
    Link Publication
  • 2009
    Title Loss of matKRNA editing in seed plant chloroplasts
    DOI 10.1186/1471-2148-9-201
    Type Journal Article
    Author Tillich M
    Journal BMC Evolutionary Biology
    Pages 201
    Link Publication
  • 2009
    Title TonB-dependent transporters and their occurrence in cyanobacteria
    DOI 10.1186/1741-7007-7-68
    Type Journal Article
    Author Mirus O
    Journal BMC Biology
    Pages 68
    Link Publication
  • 2009
    Title Evolutionarily evolved discriminators in the 3-TPR domain of the Toc64 family involved in protein translocation at the outer membrane of chloroplasts and mitochondria
    DOI 10.1007/s00894-008-0449-y
    Type Journal Article
    Author Mirus O
    Journal Journal of Molecular Modeling
    Pages 971
  • 2009
    Title Accurate Prediction of Peptide Binding Sites on Protein Surfaces
    DOI 10.1371/journal.pcbi.1000335
    Type Journal Article
    Author Petsalaki E
    Journal PLoS Computational Biology
    Link Publication
  • 2009
    Title Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life
    DOI 10.1128/jb.00923-09
    Type Journal Article
    Author Krauss U
    Journal Journal of Bacteriology
    Pages 7234-7242
    Link Publication
  • 2009
    Title Tetrahymena Meiotic Nuclear Reorganization Is Induced by a Checkpoint Kinase–dependent Response to DNA Damage
    DOI 10.1091/mbc.e08-10-1058
    Type Journal Article
    Author Loidl J
    Journal Molecular Biology of the Cell
    Pages 2428-2437
    Link Publication
  • 2009
    Title Sus1, Cdc31, and the Sac3 CID Region Form a Conserved Interaction Platform that Promotes Nuclear Pore Association and mRNA Export
    DOI 10.1016/j.molcel.2009.01.033
    Type Journal Article
    Author Jani D
    Journal Molecular Cell
    Pages 727-737
    Link Publication
  • 2009
    Title miR-29a suppresses tristetraprolin, which is a regulator of epithelial polarity and metastasis
    DOI 10.1038/embor.2009.9
    Type Journal Article
    Author Gebeshuber C
    Journal The EMBO Reports
    Pages 400-405
    Link Publication
  • 2009
    Title Nucleic Acid Sequence and Structure Databases
    DOI 10.1007/978-1-60327-241-4_1
    Type Book Chapter
    Author Washietl S
    Publisher Springer Nature
    Pages 3-15
  • 2009
    Title RNAsnoop: efficient target prediction for H/ACA snoRNAs
    DOI 10.1093/bioinformatics/btp680
    Type Journal Article
    Author Tafer H
    Journal Bioinformatics
    Pages 610-616
    Link Publication
  • 2009
    Title Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary
    DOI 10.1016/j.cell.2009.03.040
    Type Journal Article
    Author Malone C
    Journal Cell
    Pages 522-535
    Link Publication
  • 2009
    Title Central control of fever and female body temperature by RANKL/RANK
    DOI 10.1038/nature08596
    Type Journal Article
    Author Hanada R
    Journal Nature
    Pages 505-509
  • 2009
    Title A Toolkit and Robust Pipeline for the Generation of Fosmid-Based Reporter Genes in C. elegans
    DOI 10.1371/journal.pone.0004625
    Type Journal Article
    Author Tursun B
    Journal PLoS ONE
    Link Publication
  • 2009
    Title Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information
    DOI 10.1016/j.gde.2009.10.006
    Type Journal Article
    Author Meireles-Filho A
    Journal Current Opinion in Genetics & Development
    Pages 565-570
  • 2009
    Title Loss of the Mili-interacting Tudor domain–containing protein-1 activates transposons and alters the Mili-associated small RNA profile
    DOI 10.1038/nsmb.1615
    Type Journal Article
    Author Reuter M
    Journal Nature Structural & Molecular Biology
    Pages 639-646
  • 2009
    Title The TLR-independent DNA recognition pathway in murine macrophages: Ligand features and molecular signature
    DOI 10.1002/eji.200939344
    Type Journal Article
    Author Karayel E
    Journal European Journal of Immunology
    Pages 1929-1936
    Link Publication
  • 2009
    Title The TDRD9-MIWI2 Complex Is Essential for piRNA-Mediated Retrotransposon Silencing in the Mouse Male Germline
    DOI 10.1016/j.devcel.2009.10.012
    Type Journal Article
    Author Shoji M
    Journal Developmental Cell
    Pages 775-787
    Link Publication
  • 2009
    Title HaMStR: Profile hidden markov model based search for orthologs in ESTs
    DOI 10.1186/1471-2148-9-157
    Type Journal Article
    Author Ebersberger I
    Journal BMC Evolutionary Biology
    Pages 157
    Link Publication
  • 2009
    Title Ars2 and the Cap-Binding Complex Team up for Silencing
    DOI 10.1016/j.cell.2009.07.009
    Type Journal Article
    Author Nielsen A
    Journal Cell
    Pages 224-226
    Link Publication
  • 2009
    Title RNA-Regulated Interaction of Transportin-1 and Exportin-5 with the Double-Stranded RNA-Binding Domain Regulates Nucleocytoplasmic Shuttling of ADAR1
    DOI 10.1128/mcb.01519-08
    Type Journal Article
    Author Fritz J
    Journal Molecular and Cellular Biology
    Pages 1487-1497
    Link Publication
  • 2009
    Title Taxon Selection under Split Diversity
    DOI 10.1093/sysbio/syp058
    Type Journal Article
    Author Minh B
    Journal Systematic Biology
    Pages 586-594
    Link Publication
  • 2009
    Title Mutational Uncoupling of the Role of Sus1 in Nuclear Pore Complex Targeting of an mRNA Export Complex and Histone H2B Deubiquitination
    DOI 10.1074/jbc.m900502200
    Type Journal Article
    Author Klöckner C
    Journal Journal of Biological Chemistry
    Pages 12049-12056
    Link Publication
  • 2009
    Title Processing mitochondrial (t)RNAs: New enzyme, old job
    DOI 10.4161/cc.8.11.8502
    Type Journal Article
    Author Rossmanith W
    Journal Cell Cycle
    Pages 1650-1653
    Link Publication
  • 2009
    Title Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection
    DOI 10.1126/science.1173164
    Type Journal Article
    Author Cronin S
    Journal Science
    Pages 340-343
    Link Publication
  • 2009
    Title Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform
    DOI 10.1261/rna.1611309
    Type Journal Article
    Author Zhou R
    Journal RNA
    Pages 1886-1895
    Link Publication
  • 2009
    Title 2'-O-methylation stabilizes Piwi-associated small RNAs and ensures DNA elimination in Tetrahymena
    DOI 10.1261/rna.1455509
    Type Journal Article
    Author Kurth H
    Journal RNA
    Pages 675-685
    Link Publication
  • 2009
    Title The impact of non-coding RNAs
    DOI 10.1038/embor.2009.100
    Type Journal Article
    Author Boots J
    Journal The EMBO Reports
    Pages 563-567
    Link Publication
  • 2009
    Title A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis
    DOI 10.1038/ncb1876
    Type Journal Article
    Author Siegel G
    Journal Nature Cell Biology
    Pages 705-716
    Link Publication
  • 2009
    Title Translation initiation complex formation in the crenarchaeon Sulfolobus solfataricus
    DOI 10.1261/rna.1662609
    Type Journal Article
    Author Hasenöhrl D
    Journal RNA
    Pages 2288-2298
    Link Publication
  • 2009
    Title Two GW Repeat Proteins Interact with Tetrahymena thermophila Argonaute and Promote Genome Rearrangement
    DOI 10.1128/mcb.00076-09
    Type Journal Article
    Author Bednenko J
    Journal Molecular and Cellular Biology
    Pages 5020-5030
    Link Publication
  • 2009
    Title MicroRNAs Cross the Line: The Battle for mRNA Stability Enters the Coding Sequence
    DOI 10.1016/j.molcel.2009.07.006
    Type Journal Article
    Author Nielsen A
    Journal Molecular Cell
    Pages 139-140
    Link Publication
  • 2009
    Title Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding
    DOI 10.1093/nar/gkp1125
    Type Journal Article
    Author Vecerek B
    Journal Nucleic Acids Research
    Pages 1284-1293
    Link Publication
  • 2009
    Title tRNA recognition, processing, and disease: Hypotheses around an unorthodox type of RNase P in human mitochondria
    DOI 10.1016/j.mito.2009.03.008
    Type Journal Article
    Author Holzmann J
    Journal Mitochondrion
    Pages 284-288
    Link Publication
  • 2009
    Title De novo prediction of structured RNAs from genomic sequences
    DOI 10.1016/j.tibtech.2009.09.006
    Type Journal Article
    Author Gorodkin J
    Journal Trends in Biotechnology
    Pages 9-19
    Link Publication
  • 2009
    Title Learning the transcriptional regulatory code
    DOI 10.1038/msb.2009.88
    Type Journal Article
    Author Stark A
    Journal Molecular Systems Biology
    Link Publication
  • 2008
    Title Silencing and transcriptional properties of the imprinted Airn ncRNA are independent of the endogenous promoter
    DOI 10.1038/emboj.2008.239
    Type Journal Article
    Author Stricker S
    Journal The EMBO Journal
    Pages 3116-3128
    Link Publication
  • 2008
    Title Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
    DOI 10.1021/pr8000173
    Type Journal Article
    Author Van Bentem S
    Journal Journal of Proteome Research
    Pages 2458-2470
  • 2008
    Title Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader
    DOI 10.1261/rna.603108
    Type Journal Article
    Author Resch A
    Journal RNA
    Pages 454-459
    Link Publication
  • 2008
    Title Role of Cajal Bodies and Nucleolus in the Maturation of the U1 snRNP in Arabidopsis
    DOI 10.1371/journal.pone.0003989
    Type Journal Article
    Author Lorkovic Z
    Journal PLoS ONE
    Link Publication
  • 2008
    Title SINE RNA Induces Severe Developmental Defects in Arabidopsis thaliana and Interacts with HYL1 (DRB1), a Key Member of the DCL1 Complex
    DOI 10.1371/journal.pgen.1000096
    Type Journal Article
    Author Pouch-Pélissier M
    Journal PLoS Genetics
    Link Publication
  • 2008
    Title Identification of the human homolog of the imprinted mouse Air non-coding RNA
    DOI 10.1016/j.ygeno.2008.08.004
    Type Journal Article
    Author Yotova I
    Journal Genomics
    Pages 464-473
    Link Publication
  • 2008
    Title Rooted triple consensus and anomalous gene trees
    DOI 10.1186/1471-2148-8-118
    Type Journal Article
    Author Ewing G
    Journal BMC Evolutionary Biology
    Pages 118
    Link Publication
  • 2008
    Title Translation initiation factor a/eIF2(-?) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus
    DOI 10.1073/pnas.0708894105
    Type Journal Article
    Author Hasenöhrl D
    Journal Proceedings of the National Academy of Sciences
    Pages 2146-2150
    Link Publication
  • 2008
    Title Crystal Structure of the Intact Archaeal Translation Initiation Factor 2 Demonstrates Very High Conformational Flexibility in the a- and ß-Subunits
    DOI 10.1016/j.jmb.2008.07.039
    Type Journal Article
    Author Stolboushkina E
    Journal Journal of Molecular Biology
    Pages 680-691
  • 2008
    Title Dynamic Interaction between P-Bodies and Transport Ribonucleoprotein Particles in Dendrites of Mature Hippocampal Neurons
    DOI 10.1523/jneurosci.0104-08.2008
    Type Journal Article
    Author Zeitelhofer M
    Journal The Journal of Neuroscience
    Pages 7555-7562
    Link Publication
  • 2008
    Title The impact of target site accessibility on the design of effective siRNAs
    DOI 10.1038/nbt1404
    Type Journal Article
    Author Tafer H
    Journal Nature Biotechnology
    Pages 578-583
  • 2008
    Title Specificity of ADAR-mediated RNA editing in newly identified targets
    DOI 10.1261/rna.923308
    Type Journal Article
    Author Riedmann E
    Journal RNA
    Pages 1110-1118
    Link Publication
  • 2008
    Title The impact of single substitutions on multiple sequence alignments
    DOI 10.1098/rstb.2008.0140
    Type Journal Article
    Author Klaere S
    Journal Philosophical Transactions of the Royal Society B: Biological Sciences
    Pages 4041-4047
    Link Publication
  • 2008
    Title Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
    DOI 10.1186/1479-5876-6-69
    Type Journal Article
    Author Rohrbeck A
    Journal Journal of Translational Medicine
    Pages 69
    Link Publication
  • 2008
    Title Budgeted Phylogenetic Diversity on Circular Split Systems
    DOI 10.1109/tcbb.2008.54
    Type Journal Article
    Author Minh B
    Journal IEEE/ACM Transactions on Computational Biology and Bioinformatics
    Pages 22-29
  • 2008
    Title RNAplex: a fast tool for RNA–RNA interaction search
    DOI 10.1093/bioinformatics/btn193
    Type Journal Article
    Author Tafer H
    Journal Bioinformatics
    Pages 2657-2663
    Link Publication
  • 2008
    Title Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
    DOI 10.1099/mic.0.2008/019703-0
    Type Journal Article
    Author Sonnleitner E
    Journal Microbiology
    Pages 3175-3187
    Link Publication
  • 2008
    Title An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees
    DOI 10.1089/cmb.2008.0068
    Type Journal Article
    Author Kupczok A
    Journal Journal of computational biology : a journal of computational molecular cell biology
    Pages 577-591
    Link Publication
  • 2008
    Title An endogenous small interfering RNA pathway in Drosophila
    DOI 10.1038/nature07007
    Type Journal Article
    Author Czech B
    Journal Nature
    Pages 798-802
    Link Publication
  • 2008
    Title Janus chaperones: Assistance of both RNA- and protein-folding by ribosomal proteins
    DOI 10.1016/j.febslet.2008.11.049
    Type Journal Article
    Author Kovacs D
    Journal FEBS Letters
    Pages 88-92
    Link Publication
  • 2008
    Title Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics
    DOI 10.1007/978-3-540-70600-7_9
    Type Book Chapter
    Author Mückstein U
    Publisher Springer Nature
    Pages 114-127
  • 2008
    Title Visualization of Barrier Tree Sequences Revisited
    DOI 10.1007/978-3-540-72630-2_16
    Type Book Chapter
    Author Heine C
    Publisher Springer Nature
    Pages 275-290
  • 2008
    Title DNA double-strand breaks, but not crossovers, are required for the reorganization of meiotic nuclei in Tetrahymena
    DOI 10.1242/jcs.031799
    Type Journal Article
    Author Mochizuki K
    Journal Journal of Cell Science
    Pages 2148-2158
    Link Publication
  • 2008
    Title Isolation of small RNA-binding proteins from E. coli: Evidence for frequent interaction of RNAs with RNA polymerase
    DOI 10.4161/rna.5.1.5694
    Type Journal Article
    Author Windbichler N
    Journal RNA Biology
    Pages 30-40
    Link Publication
  • 2008
    Title An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
    DOI 10.1126/science.1165171
    Type Journal Article
    Author Brennecke J
    Journal Science
    Pages 1387-1392
    Link Publication
  • 2008
    Title Comment on ‘A congruence index for testing topological similarity between trees’
    DOI 10.1093/bioinformatics/btn539
    Type Journal Article
    Author Kupczok A
    Journal Bioinformatics
    Pages 147-149
    Link Publication
  • 2008
    Title Target site effects in the RNA interference and microRNA pathways
    DOI 10.1042/bst0361216
    Type Journal Article
    Author Obernosterer G
    Journal Biochemical Society Transactions
    Pages 1216-1219
    Link Publication
  • 2008
    Title The Vienna RNA Websuite
    DOI 10.1093/nar/gkn188
    Type Journal Article
    Author Gruber A
    Journal Nucleic Acids Research
    Link Publication
  • 2008
    Title Model-based probe set optimization for high-performance microarrays
    DOI 10.1093/nar/gkn1001
    Type Journal Article
    Author Leparc G
    Journal Nucleic Acids Research
    Link Publication
  • 2008
    Title Study of an RNA helicase implicates small RNA–noncoding RNA interactions in programmed DNA elimination in Tetrahymena
    DOI 10.1101/gad.481908
    Type Journal Article
    Author Aronica L
    Journal Genes & Development
    Pages 2228-2241
    Link Publication
  • 2008
    Title Invertebrate 7SK snRNAs
    DOI 10.1007/s00239-007-9052-6
    Type Journal Article
    Author Gruber A
    Journal Journal of Molecular Evolution
    Pages 107-115
    Link Publication
  • 2008
    Title A Single Mutation in the IF3 N-Terminal Domain Perturbs the Fidelity of Translation Initiation at Three Levels
    DOI 10.1016/j.jmb.2008.09.012
    Type Journal Article
    Author Maar D
    Journal Journal of Molecular Biology
    Pages 937-944
  • 2008
    Title Beyond energy minimization: approaches to the kinetic folding of RNA
    DOI 10.1007/s00706-008-0895-3
    Type Journal Article
    Author Flamm C
    Journal Monatshefte für Chemie - Chemical Monthly
    Pages 447-457
    Link Publication
  • 2008
    Title H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
    DOI 10.1101/gr.080861.108
    Type Journal Article
    Author Pauler F
    Journal Genome Research
    Pages 221-233
    Link Publication
  • 2008
    Title Plant SR Proteins and Their Functions
    DOI 10.1007/978-3-540-76776-3_5
    Type Book Chapter
    Author Barta A
    Publisher Springer Nature
    Pages 83-102
  • 2008
    Title RNAalifold: improved consensus structure prediction for RNA alignments
    DOI 10.1186/1471-2105-9-474
    Type Journal Article
    Author Bernhart S
    Journal BMC Bioinformatics
    Pages 474
    Link Publication
  • 2008
    Title Genome analysis of the platypus reveals unique signatures of evolution
    DOI 10.1038/nature06936
    Type Journal Article
    Author Warren W
    Journal Nature
    Pages 175-183
    Link Publication
  • 2008
    Title El Sur también existe: processing RNA in the Argentine Patagonia
    DOI 10.1038/embor.2008.97
    Type Journal Article
    Author Martinez J
    Journal The EMBO Reports
    Pages 516-520
    Link Publication
  • 2008
    Title www.rnaworkbench.com: A new program for analyzing RNA interference
    DOI 10.1016/j.cmpb.2007.12.001
    Type Journal Article
    Author Vareková R
    Journal Computer Methods and Programs in Biomedicine
    Pages 89-94
  • 2008
    Title Knowledge Acquisition Focused Cooperative Development of Bio-ontologies – A Case Study with BIO2Me
    DOI 10.1007/978-3-540-70600-7_20
    Type Book Chapter
    Author Mainz D
    Publisher Springer Nature
    Pages 258-272
  • 2008
    Title Antimicrobial activity of a chimeric enzybiotic towards Staphylococcus aureus
    DOI 10.1016/j.jbiotec.2008.09.003
    Type Journal Article
    Author Manoharadas S
    Journal Journal of Biotechnology
    Pages 118-123
  • 2008
    Title High efficiency transformation of Tetrahymena using a codon-optimized neomycin resistance gene
    DOI 10.1016/j.gene.2008.08.007
    Type Journal Article
    Author Mochizuki K
    Journal Gene
    Pages 79-83
  • 2008
    Title A loss of function allele for murine Staufen1 leads to impairment of dendritic Staufen1-RNP delivery and dendritic spine morphogenesis
    DOI 10.1073/pnas.0804583105
    Type Journal Article
    Author Vessey J
    Journal Proceedings of the National Academy of Sciences
    Pages 16374-16379
    Link Publication
  • 2008
    Title Pegylated granulocyte colony-stimulating factor mobilizes CD34+ cells with different stem and progenitor subsets and distinct functional properties in comparison with unconjugated granulocyte colony-stimulating factor
    DOI 10.3324/haematol.12081
    Type Journal Article
    Author Bruns I
    Journal Haematologica
    Pages 347-355
    Link Publication
  • 2008
    Title Strategies for measuring evolutionary conservation of RNA secondary structures
    DOI 10.1186/1471-2105-9-122
    Type Journal Article
    Author Gruber A
    Journal BMC Bioinformatics
    Pages 122
    Link Publication
  • 2008
    Title Conservation of small RNA pathways in platypus
    DOI 10.1101/gr.073056.107
    Type Journal Article
    Author Murchison E
    Journal Genome Research
    Pages 995-1004
    Link Publication
  • 2008
    Title Folding Kinetics of Large RNAs
    DOI 10.1016/j.jmb.2008.02.064
    Type Journal Article
    Author Geis M
    Journal Journal of Molecular Biology
    Pages 160-173
    Link Publication
  • 2016
    Title Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P
    DOI 10.1093/nar/gkw080
    Type Journal Article
    Author Brillante N
    Journal Nucleic Acids Research
    Pages 2323-2336
    Link Publication
  • 2016
    Title An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile
    DOI 10.1089/cmb.2016.0096
    Type Journal Article
    Author Prakash C
    Journal Journal of Computational Biology
    Pages 200-212
    Link Publication
  • 2016
    Title RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum Medium
    DOI 10.1371/journal.pone.0147811
    Type Journal Article
    Author Tata M
    Journal PLOS ONE
    Link Publication
  • 2016
    Title AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data
    DOI 10.1101/051938
    Type Preprint
    Author Zhang R
    Pages 051938
    Link Publication
  • 2016
    Title Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors
    DOI 10.1016/j.tig.2016.10.003
    Type Journal Article
    Author Zabidi M
    Journal Trends in Genetics
    Pages 801-814
    Link Publication
  • 2016
    Title Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila
    DOI 10.15252/embj.201695164
    Type Journal Article
    Author Reimão-Pinto M
    Journal The EMBO Journal
    Pages 2417-2434
    Link Publication
  • 2016
    Title Cross-regulation by CrcZ RNA controls anoxic biofilm formation in Pseudomonas aeruginosa
    DOI 10.1038/srep39621
    Type Journal Article
    Author Pusic P
    Journal Scientific Reports
    Pages 39621
    Link Publication
  • 2016
    Title Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity
    DOI 10.1186/s13059-016-1083-0
    Type Journal Article
    Author Tajaddod M
    Journal Genome Biology
    Pages 220
    Link Publication
  • 2016
    Title Genetic and mechanistic diversity of piRNA 3'-end formation
    DOI 10.1038/nature20162
    Type Journal Article
    Author Hayashi R
    Journal Nature
    Pages 588-592
    Link Publication
  • 2016
    Title A Stress-Induced Bias in the Reading of the Genetic Code in Escherichia coli
    DOI 10.1128/mbio.01855-16
    Type Journal Article
    Author Oron-Gottesman A
    Journal mBio
    Link Publication
  • 2018
    Title Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria
    DOI 10.1534/g3.117.300394
    Type Journal Article
    Author Müller C
    Journal G3: Genes, Genomes, Genetics
    Pages 1475-1480
    Link Publication
  • 2018
    Title Light remote control of alternative splicing in roots through TOR kinase
    DOI 10.1101/472126
    Type Preprint
    Author Riegler S
    Pages 472126
    Link Publication
  • 2018
    Title Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor
    DOI 10.1093/nar/gky1164
    Type Journal Article
    Author Kroupova A
    Journal Nucleic Acids Research
    Pages 1030-1042
    Link Publication
  • 2018
    Title RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates
    DOI 10.3390/genes9080392
    Type Journal Article
    Author Thiel B
    Journal Genes
    Pages 392
    Link Publication
  • 2018
    Title RNA editing of Filamin A pre-mRNA regulates vascular contraction and diastolic blood pressure
    DOI 10.15252/embj.201694813
    Type Journal Article
    Author Jain M
    Journal The EMBO Journal
    Link Publication
  • 2018
    Title Mutations in Cytosine-5 tRNA Methyltransferases Impact Mobile Element Expression and Genome Stability at Specific DNA Repeats
    DOI 10.1016/j.celrep.2018.01.061
    Type Journal Article
    Author Genenncher B
    Journal Cell Reports
    Pages 1861-1874
    Link Publication
  • 2018
    Title Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations
    DOI 10.1093/nar/gky079
    Type Journal Article
    Author Nikolic N
    Journal Nucleic Acids Research
    Link Publication
  • 2018
    Title Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm
    DOI 10.1016/j.devcel.2018.06.023
    Type Journal Article
    Author Sharma U
    Journal Developmental Cell
    Link Publication
  • 2018
    Title Harnessing Metabolic Regulation to Increase Hfq-Dependent Antibiotic Susceptibility in Pseudomonas aeruginosa
    DOI 10.3389/fmicb.2018.02709
    Type Journal Article
    Author Pusic P
    Journal Frontiers in Microbiology
    Pages 2709
    Link Publication
  • 2018
    Title Hypoxia/reperfusion predisposes to atherosclerosis
    DOI 10.1371/journal.pone.0205067
    Type Journal Article
    Author Finsterwalder R
    Journal PLOS ONE
    Link Publication
  • 2018
    Title The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A
    DOI 10.1111/tpj.13914
    Type Journal Article
    Author Cavallari N
    Journal The Plant Journal
    Pages 1010-1022
    Link Publication
  • 2018
    Title Isolation and Characterization of Endogenous RNPs from Brain Tissues
    DOI 10.1007/978-1-4939-7213-5_28
    Type Book Chapter
    Author Schieweck R
    Publisher Springer Nature
    Pages 419-426
  • 2016
    Title Molecular Profiling of Thymoma and Thymic Carcinoma: Genetic Differences and Potential Novel Therapeutic Targets
    DOI 10.1007/s12253-016-0144-8
    Type Journal Article
    Author Enkner F
    Journal Pathology & Oncology Research
    Pages 551-564
    Link Publication
  • 2015
    Title AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana
    DOI 10.1111/nph.13545
    Type Journal Article
    Author Zhang R
    Journal New Phytologist
    Pages 96-101
    Link Publication
  • 2015
    Title Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study
    DOI 10.1186/s12917-015-0378-9
    Type Journal Article
    Author Krunic M
    Journal BMC Veterinary Research
    Pages 90
    Link Publication
  • 2015
    Title Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts
    DOI 10.1105/tpc.15.00572
    Type Journal Article
    Author Brown J
    Journal The Plant Cell
    Pages 2083-2087
    Link Publication
  • 2017
    Title A to I editing in disease is not fake news
    DOI 10.1080/15476286.2017.1306173
    Type Journal Article
    Author Bajad P
    Journal RNA Biology
    Pages 1223-1231
    Link Publication
  • 2017
    Title Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes
    DOI 10.1093/nar/gkx405
    Type Journal Article
    Author Gößringer M
    Journal Nucleic Acids Research
    Pages 7441-7454
    Link Publication
  • 2017
    Title A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
    DOI 10.1093/nar/gkx267
    Type Journal Article
    Author Zhang R
    Journal Nucleic Acids Research
    Pages 5061-5073
    Link Publication
  • 2017
    Title RNA in Disease and development
    DOI 10.1080/15476286.2017.1316929
    Type Journal Article
    Author Barta A
    Journal RNA Biology
    Pages 457-459
    Link Publication
  • 2017
    Title Genome-wide identification of intrasplicing events in the human transcriptome and hints to their regulatory potential
    DOI 10.1101/159350
    Type Preprint
    Author Radtke M
    Pages 159350
    Link Publication
  • 2017
    Title Promoting transcription over long distances
    DOI 10.1038/ng.3904
    Type Journal Article
    Author Catarino R
    Journal Nature Genetics
    Pages 972-973
  • 2017
    Title Thiol-linked alkylation of RNA to assess expression dynamics
    DOI 10.1038/nmeth.4435
    Type Journal Article
    Author Herzog V
    Journal Nature Methods
    Pages 1198-1204
    Link Publication
  • 2018
    Title Analysis of 3' End Modifications in microRNAs by High-Throughput Sequencing
    DOI 10.1007/978-1-4939-8624-8_10
    Type Book Chapter
    Author Reimão-Pinto M
    Publisher Springer Nature
    Pages 115-139
  • 2018
    Title In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction
    DOI 10.1371/journal.pbio.2005129
    Type Journal Article
    Author Uhse S
    Journal PLOS Biology
    Link Publication
  • 2017
    Title The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14
    DOI 10.3389/fmicb.2017.02312
    Type Journal Article
    Author Tata M
    Journal Frontiers in Microbiology
    Pages 2312
    Link Publication
  • 2017
    Title MUW researcher of the month
    DOI 10.1007/s00508-017-1292-x
    Type Journal Article
    Journal Wiener klinische Wochenschrift
    Pages 913-914
  • 2017
    Title Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets
    DOI 10.1105/tpc.16.00845
    Type Journal Article
    Author Schon M
    Journal The Plant Cell
    Pages 608-617
    Link Publication
  • 2022
    Title The Drosophila ZAD zinc finger protein Kipferl guides Rhino to piRNA clusters
    DOI 10.7554/elife.80067
    Type Journal Article
    Author Baumgartner L
    Journal eLife
    Link Publication
  • 2022
    Title Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
    DOI 10.1186/s13104-022-06061-9
    Type Journal Article
    Author Nikolic N
    Journal BMC Research Notes
    Pages 173
    Link Publication
  • 2022
    Title Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq
    DOI 10.3389/fmicb.2022.919539
    Type Journal Article
    Author Rozner M
    Journal Frontiers in Microbiology
    Pages 919539
    Link Publication
  • 2020
    Title Structure of the human core transcription-export complex reveals a hub for multivalent interactions
    DOI 10.7554/elife.61503
    Type Journal Article
    Author Pühringer T
    Journal eLife
    Link Publication
  • 2013
    Title Bacterial helicases in post-transcriptional control
    DOI 10.1016/j.bbagrm.2012.12.005
    Type Journal Article
    Author Kaberdin V
    Journal Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
    Pages 878-883
  • 2013
    Title Imprinted Igf2r silencing depends on continuous Airn lncRNA expression and is not restricted to a developmental window
    DOI 10.1242/dev.088849
    Type Journal Article
    Author Santoro F
    Journal Development
    Pages 1184-1195
  • 2013
    Title Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems
    DOI 10.1093/nar/gkt1074
    Type Journal Article
    Author Fonfara I
    Journal Nucleic Acids Research
    Pages 2577-2590
    Link Publication
  • 2013
    Title Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature
    DOI 10.4161/rna.27100
    Type Journal Article
    Author Hämmerle H
    Journal RNA Biology
    Pages 1834-1841
    Link Publication
  • 2013
    Title The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems
    DOI 10.4161/rna.24321
    Type Journal Article
    Author Chylinski K
    Journal RNA Biology
    Pages 726-737
    Link Publication
  • 2012
    Title Do we still need supertrees?
    DOI 10.1186/1741-7007-10-13
    Type Journal Article
    Author Von Haeseler A
    Journal BMC Biology
    Pages 13
    Link Publication
  • 2012
    Title Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD–PA1779–cobA operon
    DOI 10.1099/mic.0.053850-0
    Type Journal Article
    Author Romeo A
    Journal Microbiology
    Pages 1543-1552
    Link Publication
  • 2012
    Title Diversity and roles of (t)RNA ligases
    DOI 10.1007/s00018-012-0944-2
    Type Journal Article
    Author Popow J
    Journal Cellular and Molecular Life Sciences
    Pages 2657-2670
    Link Publication
  • 2012
    Title Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
    DOI 10.1101/gr.132811.111
    Type Journal Article
    Author Yáñez-Cuna J
    Journal Genome Research
    Pages 2018-2030
    Link Publication
  • 2012
    Title Structural flexibility of RNA as molecular basis for Hfq chaperone function
    DOI 10.1093/nar/gks510
    Type Journal Article
    Author De Almeida Ribeiro E
    Journal Nucleic Acids Research
    Pages 8072-8084
    Link Publication
  • 2012
    Title TreeSnatcher plus: capturing phylogenetic trees from images
    DOI 10.1186/1471-2105-13-110
    Type Journal Article
    Author Laubach T
    Journal BMC Bioinformatics
    Pages 110
    Link Publication
  • 2012
    Title Folding RNA/DNA hybrid duplexes
    DOI 10.1093/bioinformatics/bts466
    Type Journal Article
    Author Lorenz R
    Journal Bioinformatics
    Pages 2530-2531
  • 2012
    Title The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila
    DOI 10.1016/j.molcel.2012.07.021
    Type Journal Article
    Author Olivieri D
    Journal Molecular Cell
    Pages 954-969
    Link Publication
  • 2012
    Title Direct Interaction of the N-Terminal Domain of Ribosomal Protein S1 with Protein S2 in Escherichia coli
    DOI 10.1371/journal.pone.0032702
    Type Journal Article
    Author Byrgazov K
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Selective translation during stress in Escherichia coli
    DOI 10.1016/j.tibs.2012.07.007
    Type Journal Article
    Author Moll I
    Journal Trends in Biochemical Sciences
    Pages 493-498
    Link Publication
  • 2012
    Title Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    DOI 10.1101/gr.134106.111
    Type Journal Article
    Author Marquez Y
    Journal Genome Research
    Pages 1184-1195
    Link Publication
  • 2014
    Title Shedding light on the chloroplast as a remote control of nuclear gene expression
    DOI 10.4161/15592324.2014.976150
    Type Journal Article
    Author Herz M
    Journal Plant Signaling & Behavior
    Link Publication
  • 2014
    Title Functions of double-stranded RNA-binding domains in nucleocytoplasmic transport
    DOI 10.4161/15476286.2014.972856
    Type Journal Article
    Author Banerjee S
    Journal RNA Biology
    Pages 1226-1232
    Link Publication
  • 2014
    Title Let there be light: Regulation of gene expression in plants
    DOI 10.4161/15476286.2014.972852
    Type Journal Article
    Author Petrillo E
    Journal RNA Biology
    Pages 1215-1220
    Link Publication
  • 2014
    Title A Chloroplast Retrograde Signal Regulates Nuclear Alternative Splicing
    DOI 10.1126/science.1250322
    Type Journal Article
    Author Petrillo E
    Journal Science
    Pages 427-430
    Link Publication
  • 2014
    Title Suitable transfection methods for single particle tracing in plant suspension cells
    DOI 10.1186/1746-4811-10-15
    Type Journal Article
    Author Göhring J
    Journal Plant Methods
    Pages 15
    Link Publication
  • 2014
    Title The RNA-Editing Enzyme ADAR1 Controls Innate Immune Responses to RNA
    DOI 10.1016/j.celrep.2014.10.041
    Type Journal Article
    Author Mannion N
    Journal Cell Reports
    Pages 1482-1494
    Link Publication
  • 2014
    Title Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation
    DOI 10.1038/nature13994
    Type Journal Article
    Author Zabidi M
    Journal Nature
    Pages 556-559
    Link Publication
  • 2012
    Title Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression
    DOI 10.1016/j.cell.2012.10.040
    Type Journal Article
    Author Sienski G
    Journal Cell
    Pages 964-980
    Link Publication
  • 2012
    Title Embryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans
    DOI 10.1016/j.cell.2012.10.049
    Type Journal Article
    Author Cochella L
    Journal Cell
    Pages 1229-1242
    Link Publication
  • 2012
    Title A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
    DOI 10.1126/science.1225829
    Type Journal Article
    Author Jinek M
    Journal Science
    Pages 816-821
    Link Publication
  • 2012
    Title Nuclear RNase P of Trypanosoma brucei: A Single Protein in Place of the Multicomponent RNA-Protein Complex
    DOI 10.1016/j.celrep.2012.05.021
    Type Journal Article
    Author Taschner A
    Journal Cell Reports
    Pages 19-25
    Link Publication
  • 2012
    Title A Histone Deacetylase Adjusts Transcription Kinetics at Coding Sequences during Candida albicans Morphogenesis
    DOI 10.1371/journal.pgen.1003118
    Type Journal Article
    Author Hnisz D
    Journal PLoS Genetics
    Link Publication
  • 2012
    Title Symmetric circular matchings and RNA folding
    DOI 10.1016/j.disc.2011.06.004
    Type Journal Article
    Author Hofacker I
    Journal Discrete Mathematics
    Pages 100-112
    Link Publication
  • 2012
    Title Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis
    DOI 10.1371/journal.pone.0041528
    Type Journal Article
    Author Dinh H
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos
    DOI 10.1038/nature10756
    Type Journal Article
    Author Nodine M
    Journal Nature
    Pages 94-97
    Link Publication
  • 2012
    Title An Asymmetrically Localized Staufen2-Dependent RNA Complex Regulates Maintenance of Mammalian Neural Stem Cells
    DOI 10.1016/j.stem.2012.06.010
    Type Journal Article
    Author Vessey J
    Journal Cell Stem Cell
    Pages 517-528
    Link Publication
  • 2012
    Title Benefit-of-doubt (BOD) scoring: A sequencing-based method for SNP candidate assessment from high to medium read number data sets
    DOI 10.1016/j.ygeno.2012.12.001
    Type Journal Article
    Author Sedlazeck F
    Journal Genomics
    Pages 204-209
    Link Publication
  • 2012
    Title HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature
    DOI 10.1101/gad.188052.112
    Type Journal Article
    Author Kvon E
    Journal Genes & Development
    Pages 908-913
    Link Publication
  • 2012
    Title Modelling Translation Initiation under the Influence of sRNA
    DOI 10.3390/ijms131216223
    Type Journal Article
    Author Amman F
    Journal International Journal of Molecular Sciences
    Pages 16223-16240
    Link Publication
  • 2012
    Title Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
    DOI 10.1101/gr.133025.111
    Type Journal Article
    Author Vesely C
    Journal Genome Research
    Pages 1468-1476
    Link Publication
  • 2012
    Title tRNA Processing by Protein-Only versus RNA-Based RNase P: Kinetic Analysis Reveals Mechanistic Differences
    DOI 10.1002/cbic.201200434
    Type Journal Article
    Author Pavlova L
    Journal ChemBioChem
    Pages 2270-2276
  • 2012
    Title On the group theoretical background of assigning stepwise mutations onto phylogenies
    DOI 10.1186/1748-7188-7-36
    Type Journal Article
    Author Fischer M
    Journal Algorithms for Molecular Biology
    Pages 36
    Link Publication
  • 2012
    Title Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing
    DOI 10.1126/science.1228110
    Type Journal Article
    Author Latos P
    Journal Science
    Pages 1469-1472
  • 2012
    Title Identification of an ancient haemophilia A splice site mutation
    DOI 10.1016/j.thromres.2012.02.008
    Type Journal Article
    Author Reitter-Pfoertner S
    Journal Thrombosis Research
    Pages 445-450
  • 2012
    Title Stable transgenesis in the marine annelid Platynereis dumerilii sheds new light on photoreceptor evolution
    DOI 10.1073/pnas.1209657109
    Type Journal Article
    Author Backfisch B
    Journal Proceedings of the National Academy of Sciences
    Pages 193-198
    Link Publication
  • 2012
    Title Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity
    DOI 10.1093/nar/gks1252
    Type Journal Article
    Author Bannikova O
    Journal Nucleic Acids Research
    Pages 1783-1796
    Link Publication
  • 2012
    Title Asymmetric Segregation of the Double-Stranded RNA Binding Protein Staufen2 during Mammalian Neural Stem Cell Divisions Promotes Lineage Progression
    DOI 10.1016/j.stem.2012.06.006
    Type Journal Article
    Author Kusek G
    Journal Cell Stem Cell
    Pages 505-516
    Link Publication
  • 2012
    Title Chapter five Diverse Functions of MicroRNAs in Nervous System Development
    DOI 10.1016/b978-0-12-387038-4.00005-7
    Type Book Chapter
    Author Cochella L
    Publisher Elsevier
    Pages 115-143
  • 2012
    Title RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
    DOI 10.1093/nar/gks009
    Type Journal Article
    Author Washietl S
    Journal Nucleic Acids Research
    Pages 4261-4272
    Link Publication
  • 2012
    Title Study of E. coli Hfq’s RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents
    DOI 10.1093/nar/gks942
    Type Journal Article
    Author Doetsch M
    Journal Nucleic Acids Research
    Pages 487-497
    Link Publication
  • 2012
    Title A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase—extensive moonlighting in mitochondrial tRNA biogenesis
    DOI 10.1093/nar/gks910
    Type Journal Article
    Author Vilardo E
    Journal Nucleic Acids Research
    Pages 11583-11593
    Link Publication
  • 2012
    Title RNA Folding Algorithms with G-Quadruplexes
    DOI 10.1007/978-3-642-31927-3_5
    Type Book Chapter
    Author Lorenz R
    Publisher Springer Nature
    Pages 49-60
  • 2012
    Title Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena
    DOI 10.1101/gad.196493.112
    Type Journal Article
    Author Schoeberl U
    Journal Genes & Development
    Pages 1729-1742
    Link Publication
  • 2012
    Title RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation
    DOI 10.1093/nar/gks1353
    Type Journal Article
    Author Tariq A
    Journal Nucleic Acids Research
    Pages 2581-2593
    Link Publication
  • 2012
    Title Long-term, efficient inhibition of microRNA function in mice using rAAV vectors
    DOI 10.1038/nmeth.1903
    Type Journal Article
    Author Xie J
    Journal Nature Methods
    Pages 403-409
    Link Publication
  • 2012
    Title NGC: lossless and lossy compression of aligned high-throughput sequencing data
    DOI 10.1093/nar/gks939
    Type Journal Article
    Author Popitsch N
    Journal Nucleic Acids Research
    Link Publication
  • 2012
    Title A numbers game underpins cytoplasmic mRNA transport
    DOI 10.1038/ncb2475
    Type Journal Article
    Author Doyle M
    Journal Nature Cell Biology
    Pages 333-335
  • 2012
    Title LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs
    DOI 10.1261/rna.029041.111
    Type Journal Article
    Author Will S
    Journal RNA
    Pages 900-914
    Link Publication
  • 2012
    Title Deciphering the transcriptional cis-regulatory code
    DOI 10.1016/j.tig.2012.09.007
    Type Journal Article
    Author Yáñez-Cuna J
    Journal Trends in Genetics
    Pages 11-22
  • 2012
    Title REvolver: Modeling Sequence Evolution under Domain Constraints
    DOI 10.1093/molbev/mss078
    Type Journal Article
    Author Koestler T
    Journal Molecular Biology and Evolution
    Pages 2133-2145
    Link Publication
  • 2012
    Title Alternative splicing in plants – coming of age
    DOI 10.1016/j.tplants.2012.06.001
    Type Journal Article
    Author Syed N
    Journal Trends in Plant Science
    Pages 616-623
    Link Publication
  • 2012
    Title Transcript Diversification in the Nervous System: A to I RNA Editing in CNS Function and Disease Development
    DOI 10.3389/fnins.2012.00099
    Type Journal Article
    Author Tariq A
    Journal Frontiers in Neuroscience
    Pages 99
    Link Publication
  • 2015
    Title Approaching the Golden Fleece a Molecule at a Time: Biophysical Insights into Argonaute-Instructed Nucleic Acid Interactions
    DOI 10.1016/j.molcel.2015.06.021
    Type Journal Article
    Author Herzog V
    Journal Molecular Cell
    Pages 4-7
    Link Publication
  • 2015
    Title Chapter Eight Thermodynamic and Kinetic Folding of Riboswitches
    DOI 10.1016/bs.mie.2014.10.060
    Type Book Chapter
    Author Badelt S
    Publisher Elsevier
    Pages 193-213
  • 2015
    Title Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity
    DOI 10.1101/gr.186585.114
    Type Journal Article
    Author Marquez Y
    Journal Genome Research
    Pages 995-1007
    Link Publication
  • 2014
    Title Drosha protein levels are translationally regulated during Xenopus oocyte maturation
    DOI 10.1091/mbc.e13-07-0386
    Type Journal Article
    Author Muggenhumer D
    Journal Molecular Biology of the Cell
    Pages 2094-2104
    Link Publication
  • 2011
    Title Finding aptamers and small ribozymes in unexpected places
    DOI 10.1002/wrna.105
    Type Journal Article
    Author Matylla-Kulinska K
    Journal Wiley Interdisciplinary Reviews: RNA
    Pages 73-91
  • 2011
    Title The 3'-to-5' Exoribonuclease Nibbler Shapes the 3' Ends of MicroRNAs Bound to Drosophila Argonaute1
    DOI 10.1016/j.cub.2011.09.034
    Type Journal Article
    Author Han B
    Journal Current Biology
    Pages 1878-1887
    Link Publication
  • 2011
    Title Forward and Reverse Genetics through Derivation of Haploid Mouse Embryonic Stem Cells
    DOI 10.1016/j.stem.2011.10.012
    Type Journal Article
    Author Elling U
    Journal Cell Stem Cell
    Pages 563-574
    Link Publication
  • 2011
    Title Localization and Dynamics of Nuclear Speckles in Plants
    DOI 10.1104/pp.111.186700
    Type Journal Article
    Author Reddy A
    Journal Plant Physiology
    Pages 67-77
    Link Publication
  • 2011
    Title A high-resolution map of human evolutionary constraint using 29 mammals
    DOI 10.1038/nature10530
    Type Journal Article
    Author Lindblad-Toh K
    Journal Nature
    Pages 476-482
    Link Publication
  • 2011
    Title Temporal and Spatial Regulation of MicroRNA Activity with Photoactivatable Cantimirs
    DOI 10.1021/cb200290e
    Type Journal Article
    Author Zheng G
    Journal ACS Chemical Biology
    Pages 1332-1338
    Link Publication
  • 2011
    Title From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs
    DOI 10.1371/journal.pcbi.1002100
    Type Journal Article
    Author Gorodkin J
    Journal PLoS Computational Biology
    Link Publication
  • 2011
    Title Independent localization of MAP2, CaMKIIa and ß-actin RNAs in low copy numbers
    DOI 10.1038/embor.2011.149
    Type Journal Article
    Author Mikl M
    Journal The EMBO Reports
    Pages 1077-1084
    Link Publication
  • 2011
    Title The performance of phylogenetic algorithms in estimating haplotype genealogies with migration
    DOI 10.1111/j.1365-294x.2011.05066.x
    Type Journal Article
    Author Salzburger W
    Journal Molecular Ecology
    Pages 1952-1963
  • 2011
    Title A genome-scale shRNA resource for transgenic RNAi in Drosophila
    DOI 10.1038/nmeth.1592
    Type Journal Article
    Author Ni J
    Journal Nature Methods
    Pages 405-407
    Link Publication
  • 2010
    Title Establishment of a Cre/loxP recombination system for N-terminal epitope tagging of genes in Tetrahymena
    DOI 10.1186/1471-2180-10-191
    Type Journal Article
    Author Busch C
    Journal BMC Microbiology
    Pages 191
    Link Publication
  • 2010
    Title Discriminatory power of RNA family models
    DOI 10.1093/bioinformatics/btq370
    Type Journal Article
    Author Siederdissen C
    Journal Bioinformatics
    Link Publication
  • 2010
    Title SDA*: A Simple and Unifying Solution to Recent Bioinformatic Challenges for Conservation Genetics
    DOI 10.1109/kse.2010.24
    Type Conference Proceeding Abstract
    Author Minh B
    Pages 33-37
  • 2010
    Title Nematode sbRNAs: Homologs of Vertebrate Y RNAs
    DOI 10.1007/s00239-010-9332-4
    Type Journal Article
    Author Boria I
    Journal Journal of Molecular Evolution
    Pages 346-358
  • 2010
    Title Developmental gene regulation in the era of genomics
    DOI 10.1016/j.ydbio.2009.12.039
    Type Journal Article
    Author Zeitlinger J
    Journal Developmental Biology
    Pages 230-239
  • 2010
    Title Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis
    DOI 10.1105/tpc.109.072819
    Type Journal Article
    Author Baubec T
    Journal The Plant Cell
    Pages 34-47
    Link Publication
  • 2010
    Title Hedgehog Signaling Regulates Segment Formation in the Annelid Platynereis
    DOI 10.1126/science.1188913
    Type Journal Article
    Author Dray N
    Journal Science
    Pages 339-342
    Link Publication
  • 2010
    Title Regulation of plant gene expression by alternative splicing
    DOI 10.1042/bst0380667
    Type Journal Article
    Author Simpson C
    Journal Biochemical Society Transactions
    Pages 667-671
  • 2010
    Title RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles
    DOI 10.1093/nar/gkq057
    Type Journal Article
    Author Rederstorff M
    Journal Nucleic Acids Research
    Link Publication
  • 2010
    Title Diverse Endonucleolytic Cleavage Sites in the Mammalian Transcriptome Depend upon MicroRNAs, Drosha, and Additional Nucleases
    DOI 10.1016/j.molcel.2010.06.001
    Type Journal Article
    Author Karginov F
    Journal Molecular Cell
    Pages 781-788
    Link Publication
  • 2010
    Title Evolutionary Genomics of microRNAs and Their Relatives
    DOI 10.1002/9780470570418.ch15
    Type Book Chapter
    Author Tanzer A
    Publisher Wiley
    Pages 295-327
  • 2010
    Title Bcheck: a wrapper tool for detecting RNase P RNA genes
    DOI 10.1186/1471-2164-11-432
    Type Journal Article
    Author Yusuf D
    Journal BMC Genomics
    Pages 432
    Link Publication
  • 2010
    Title AREsite: a database for the comprehensive investigation of AU-rich elements
    DOI 10.1093/nar/gkq990
    Type Journal Article
    Author Gruber A
    Journal Nucleic Acids Research
    Link Publication
  • 2010
    Title The piRNA pathway: a fly's perspective on the guardian of the genome
    DOI 10.1016/j.tig.2010.08.007
    Type Journal Article
    Author Senti K
    Journal Trends in Genetics
    Pages 499-509
    Link Publication
  • 2010
    Title A single Arabidopsis organellar protein has RNase P activity
    DOI 10.1038/nsmb.1812
    Type Journal Article
    Author Gobert A
    Journal Nature Structural & Molecular Biology
    Pages 740-744
  • 2010
    Title Gene Regulation by Nucleoporins and Links to Cancer
    DOI 10.1016/j.molcel.2010.01.040
    Type Journal Article
    Author Köhler A
    Journal Molecular Cell
    Pages 6-15
    Link Publication
  • 2010
    Title Implementing a Rational and Consistent Nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR Proteins) in Plants
    DOI 10.1105/tpc.110.078352
    Type Journal Article
    Author Barta A
    Journal The Plant Cell
    Pages 2926-2929
    Link Publication
  • 2010
    Title BarMap: RNA folding on dynamic energy landscapes
    DOI 10.1261/rna.2093310
    Type Journal Article
    Author Hofacker I
    Journal RNA
    Pages 1308-1316
    Link Publication
  • 2010
    Title Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA
    DOI 10.4161/rna.7.6.13768
    Type Journal Article
    Author Resch A
    Journal RNA Biology
    Pages 796-802
    Link Publication
  • 2010
    Title Mechanisms of StpA-mediated RNA remodeling
    DOI 10.4161/rna.7.6.13882
    Type Journal Article
    Author Doetsch M
    Journal RNA Biology
    Pages 735-743
    Link Publication
  • 2010
    Title MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment
    DOI 10.1093/molbev/msq180
    Type Journal Article
    Author Nguyen M
    Journal Molecular Biology and Evolution
    Pages 143-152
    Link Publication
  • 2010
    Title A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila
    DOI 10.1091/mbc.e09-12-1079
    Type Journal Article
    Author Cheng C
    Journal Molecular Biology of the Cell
    Pages 1753-1762
    Link Publication
  • 2010
    Title Monitoring Genomic Sequences during SELEX Using High-Throughput Sequencing: Neutral SELEX
    DOI 10.1371/journal.pone.0009169
    Type Journal Article
    Author Zimmermann B
    Journal PLoS ONE
    Link Publication
  • 2010
    Title Mutations in Caenorhabditis elegans him-19 Show Meiotic Defects That Worsen with Age
    DOI 10.1091/mbc.e09-09-0811
    Type Journal Article
    Author Tang L
    Journal Molecular Biology of the Cell
    Pages 885-896
    Link Publication
  • 2010
    Title Systematic genetic analysis of muscle morphogenesis and function in Drosophila
    DOI 10.1038/nature08799
    Type Journal Article
    Author Schnorrer F
    Journal Nature
    Pages 287-291
  • 2010
    Title A Phylogenomic Approach to Resolve the Arthropod Tree of Life
    DOI 10.1093/molbev/msq130
    Type Journal Article
    Author Meusemann K
    Journal Molecular Biology and Evolution
    Pages 2451-2464
    Link Publication
  • 2010
    Title Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins
    DOI 10.1261/rna.2498411
    Type Journal Article
    Author Ameres S
    Journal RNA
    Pages 54-63
    Link Publication
  • 2010
    Title Designing Optimal siRNA Based on Target Site Accessibility
    DOI 10.1007/978-1-60761-588-0_9
    Type Book Chapter
    Author Hofacker I
    Publisher Springer Nature
    Pages 137-154
  • 2010
    Title Mammalian Pumilio 2 regulates dendrite morphogenesis and synaptic function
    DOI 10.1073/pnas.0907128107
    Type Journal Article
    Author Vessey J
    Journal Proceedings of the National Academy of Sciences
    Pages 3222-3227
    Link Publication
  • 2010
    Title Three consecutive generations of nephridia occur during development of Platynereis dumerilii (Annelida, Polychaeta)
    DOI 10.1002/dvdy.22331
    Type Journal Article
    Author Hasse C
    Journal Developmental Dynamics
    Pages 1967-1976
    Link Publication
  • 2010
    Title The Tetrahymena Argonaute-Binding Protein Giw1p Directs a Mature Argonaute-siRNA Complex to the Nucleus
    DOI 10.1016/j.cell.2010.02.010
    Type Journal Article
    Author Noto T
    Journal Cell
    Pages 692-703
    Link Publication
  • 2013
    Title Spatio-temporal profiling of Filamin A RNA-editing reveals ADAR preferences and high editing levels outside neuronal tissues
    DOI 10.4161/rna.26216
    Type Journal Article
    Author Stulic M
    Journal RNA Biology
    Pages 1611-1617
    Link Publication
  • 2013
    Title Complexity of the Alternative Splicing Landscape in Plants
    DOI 10.1105/tpc.113.117523
    Type Journal Article
    Author Reddy A
    Journal The Plant Cell
    Pages 3657-3683
    Link Publication
  • 2013
    Title TeloTool: a new tool for telomere length measurement from terminal restriction fragment analysis with improved probe intensity correction
    DOI 10.1093/nar/gkt1315
    Type Journal Article
    Author Göhring J
    Journal Nucleic Acids Research
    Link Publication
  • 2014
    Title Adaptable probabilistic mapping of short reads using position specific scoring matrices
    DOI 10.1186/1471-2105-15-100
    Type Journal Article
    Author Kerpedjiev P
    Journal BMC Bioinformatics
    Pages 100
    Link Publication
  • 2014
    Title Structural basis for the interaction of protein S1 with the Escherichia coli ribosome
    DOI 10.1093/nar/gku1314
    Type Journal Article
    Author Byrgazov K
    Journal Nucleic Acids Research
    Pages 661-673
    Link Publication
  • 2014
    Title Impact of Hfq on the Bacillus subtilis Transcriptome
    DOI 10.1371/journal.pone.0098661
    Type Journal Article
    Author Hämmerle H
    Journal PLoS ONE
    Link Publication
  • 2014
    Title Imaging of Endogenous Messenger RNA Splice Variants in Living Cells Reveals Nuclear Retention of Transcripts Inaccessible to Nonsense-Mediated Decay in Arabidopsis
    DOI 10.1105/tpc.113.118075
    Type Journal Article
    Author Göhring J
    Journal The Plant Cell
    Pages 754-764
    Link Publication
  • 2014
    Title Classification and evolution of type II CRISPR-Cas systems
    DOI 10.1093/nar/gku241
    Type Journal Article
    Author Chylinski K
    Journal Nucleic Acids Research
    Pages 6091-6105
    Link Publication
  • 2012
    Title MASon: MILLION ALIGNMENTS IN SECONDS - A Platform Independent Pairwise Sequence Alignment Library for Next Generation Sequencing Data
    DOI 10.5220/0003775701950201
    Type Conference Proceeding Abstract
    Pages 195-201
    Link Publication
  • 2012
    Title Structural and Biochemical Studies on ATP Binding and Hydrolysis by the Escherichia coli RNA Chaperone Hfq
    DOI 10.1371/journal.pone.0050892
    Type Journal Article
    Author Hämmerle H
    Journal PLoS ONE
    Link Publication
  • 2012
    Title A Downstream CpG Island Controls Transcript Initiation and Elongation and the Methylation State of the Imprinted Airn Macro ncRNA Promoter
    DOI 10.1371/journal.pgen.1002540
    Type Journal Article
    Author Koerner M
    Journal PLoS Genetics
    Link Publication
  • 2011
    Title Fast accessibility-based prediction of RNA–RNA interactions
    DOI 10.1093/bioinformatics/btr281
    Type Journal Article
    Author Tafer H
    Journal Bioinformatics
    Pages 1934-1940
    Link Publication
  • 2011
    Title A Consistent Phylogenetic Backbone for the Fungi
    DOI 10.1093/molbev/msr285
    Type Journal Article
    Author Ebersberger I
    Journal Molecular Biology and Evolution
    Pages 1319-1334
    Link Publication
  • 2011
    Title Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli
    DOI 10.1016/j.cell.2011.07.047
    Type Journal Article
    Author Vesper O
    Journal Cell
    Pages 147-157
    Link Publication
  • 2011
    Title HSPC117 Is the Essential Subunit of a Human tRNA Splicing Ligase Complex
    DOI 10.1126/science.1197847
    Type Journal Article
    Author Popow J
    Journal Science
    Pages 760-764
    Link Publication
  • 2011
    Title Neural-specific elongation of 3' UTRs during Drosophila development
    DOI 10.1073/pnas.1112672108
    Type Journal Article
    Author Hilgers V
    Journal Proceedings of the National Academy of Sciences
    Pages 15864-15869
    Link Publication
  • 2011
    Title RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data
    DOI 10.1261/rna.2536111
    Type Journal Article
    Author Washietl S
    Journal RNA
    Pages 578-594
    Link Publication
  • 2011
    Title CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    DOI 10.1038/nature09886
    Type Journal Article
    Author Deltcheva E
    Journal Nature
    Pages 602-607
    Link Publication
  • 2011
    Title RNA Accessibility in cubic time
    DOI 10.1186/1748-7188-6-3
    Type Journal Article
    Author Bernhart S
    Journal Algorithms for Molecular Biology
    Pages 3
    Link Publication
  • 2011
    Title ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods
    DOI 10.1093/molbev/msr220
    Type Journal Article
    Author Nguyen M
    Journal Molecular Biology and Evolution
    Pages 663-673
    Link Publication
  • 2011
    Title A few standing for many: embryo receptor-like kinases
    DOI 10.1016/j.tplants.2011.01.005
    Type Journal Article
    Author Nodine M
    Journal Trends in Plant Science
    Pages 211-217
  • 2011
    Title Mechanisms of dendritic mRNA transport and its role in synaptic tagging
    DOI 10.1038/emboj.2011.278
    Type Journal Article
    Author Doyle M
    Journal The EMBO Journal
    Pages 3540-3552
    Link Publication
  • 2011
    Title ViennaRNA Package 2.0
    DOI 10.1186/1748-7188-6-26
    Type Journal Article
    Author Lorenz R
    Journal Algorithms for Molecular Biology
    Pages 26
    Link Publication
  • 2011
    Title A folding algorithm for extended RNA secondary structures
    DOI 10.1093/bioinformatics/btr220
    Type Journal Article
    Author Zu Siederdissen C
    Journal Bioinformatics
    Link Publication
  • 2011
    Title Extra-embryonic-specific imprinted expression is restricted to defined lineages in the post-implantation embryo
    DOI 10.1016/j.ydbio.2011.02.017
    Type Journal Article
    Author Hudson Q
    Journal Developmental Biology
    Pages 420-431
    Link Publication
  • 2011
    Title High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
    DOI 10.1038/ng.808
    Type Journal Article
    Author He Q
    Journal Nature Genetics
    Pages 414-420
  • 2011
    Title A Genome-Wide RNAi Screen for Factors Involved in Neuronal Specification in Caenorhabditis elegans
    DOI 10.1371/journal.pgen.1002109
    Type Journal Article
    Author Poole R
    Journal PLoS Genetics
    Link Publication
  • 2011
    Title A computational pipeline for comparative ChIP-seq analyses
    DOI 10.1038/nprot.2011.420
    Type Journal Article
    Author Bardet A
    Journal Nature Protocols
    Pages 45-61
  • 2011
    Title A structural determinant required for RNA editing
    DOI 10.1093/nar/gkr144
    Type Journal Article
    Author Tian N
    Journal Nucleic Acids Research
    Pages 5669-5681
    Link Publication
  • 2011
    Title Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    DOI 10.1016/j.jbiotec.2011.02.011
    Type Journal Article
    Author Hackl M
    Journal Journal of Biotechnology
    Pages 62-75
    Link Publication
  • 2011
    Title Localization of Human RNase Z Isoforms: Dual Nuclear/Mitochondrial Targeting of the ELAC2 Gene Product by Alternative Translation Initiation
    DOI 10.1371/journal.pone.0019152
    Type Journal Article
    Author Rossmanith W
    Journal PLoS ONE
    Link Publication
  • 2011
    Title Another place, another timer: Marine species and the rhythms of life
    DOI 10.1002/bies.201000096
    Type Journal Article
    Author Tessmar-Raible K
    Journal BioEssays
    Pages 165-172
    Link Publication
  • 2011
    Title Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation
    DOI 10.1038/msb.2011.93
    Type Journal Article
    Author Kratochvill F
    Journal Molecular Systems Biology
    Link Publication
  • 2011
    Title The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation
    DOI 10.1093/nar/gkq1339
    Type Journal Article
    Author Doetsch M
    Journal Nucleic Acids Research
    Pages 4405-4418
    Link Publication
  • 2011
    Title Structural analysis of full-length Hfq from Escherichia coli
    DOI 10.1107/s174430911100786x
    Type Journal Article
    Author Beich-Frandsen M
    Journal Acta Crystallographica Section F: Structural Biology and Crystallization Communications
    Pages 536-40
    Link Publication
  • 2011
    Title A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
    DOI 10.1038/emboj.2011.308
    Type Journal Article
    Author Handler D
    Journal The EMBO Journal
    Pages 3977-3993
    Link Publication
  • 2011
    Title Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
    DOI 10.1093/nar/gkr932
    Type Journal Article
    Author Kalyna M
    Journal Nucleic Acids Research
    Pages 2454-2469
    Link Publication
  • 2011
    Title Maternally Inherited Essential Hypertension Is Associated With the Novel 4263A>G Mutation in the Mitochondrial tRNAIle Gene in a Large Han Chinese Family
    DOI 10.1161/circresaha.110.231811
    Type Journal Article
    Author Wang S
    Journal Circulation Research
    Pages 862-870
  • 2011
    Title Of P and Z: Mitochondrial tRNA processing enzymes
    DOI 10.1016/j.bbagrm.2011.11.003
    Type Journal Article
    Author Rossmanith W
    Journal Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
    Pages 1017-1026
    Link Publication
  • 2011
    Title Animal snoRNAs and scaRNAs with exceptional structures
    DOI 10.4161/rna.8.6.16603
    Type Journal Article
    Author Marz M
    Journal RNA Biology
    Pages 938-946
    Link Publication
  • 2011
    Title An RNA-Seq Strategy to Detect the Complete Coding and Non-Coding Transcriptome Including Full-Length Imprinted Macro ncRNAs
    DOI 10.1371/journal.pone.0027288
    Type Journal Article
    Author Huang R
    Journal PLoS ONE
    Link Publication
  • 2011
    Title Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq
    DOI 10.1093/nar/gkq1346
    Type Journal Article
    Author Beich-Frandsen M
    Journal Nucleic Acids Research
    Pages 4900-4915
    Link Publication
  • 2013
    Title Translation initiation in the crenarchaeon Sulfolobus solfataricus: eukaryotic features but bacterial route
    DOI 10.1042/bst20120300
    Type Journal Article
    Author La Teana A
    Journal Biochemical Society Transactions
    Pages 350-355
  • 2013
    Title A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing
    DOI 10.4161/rna.23208
    Type Journal Article
    Author Garncarz W
    Journal RNA Biology
    Pages 192-204
    Link Publication
  • 2013
    Title Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
    DOI 10.1126/science.1232542
    Type Journal Article
    Author Arnold C
    Journal Science
    Pages 1074-1077
  • 2013
    Title Intron excision from precursor tRNA molecules in mammalian cells requires ATP hydrolysis and phosphorylation of tRNA-splicing endonuclease components
    DOI 10.1042/bst20130025
    Type Journal Article
    Author Mair B
    Journal Biochemical Society Transactions
    Pages 831-837
  • 2013
    Title Characterization of the kinetics of RNA annealing and strand displacement activities of the E. coli DEAD-box helicase CsdA
    DOI 10.4161/rna.23475
    Type Journal Article
    Author Stampfl S
    Journal RNA Biology
    Pages 149-156
    Link Publication
  • 2007
    Title The C-terminal domain of Escherichia coli Hfq is required for regulation
    DOI 10.1093/nar/gkm985
    Type Journal Article
    Author Vecerek B
    Journal Nucleic Acids Research
    Pages 133-143
    Link Publication
  • 2007
    Title Two receptor-like kinases required together for the establishment of Arabidopsis cotyledon primordia
    DOI 10.1016/j.ydbio.2007.11.021
    Type Journal Article
    Author Nodine M
    Journal Developmental Biology
    Pages 161-170
    Link Publication
  • 2007
    Title SnoReport: computational identification of snoRNAs with unknown targets
    DOI 10.1093/bioinformatics/btm464
    Type Journal Article
    Author Hertel J
    Journal Bioinformatics
    Pages 158-164
    Link Publication
  • 2007
    Title Screening for engineered neomycin riboswitches that control translation initiation
    DOI 10.1261/rna.772408
    Type Journal Article
    Author Weigand J
    Journal RNA
    Pages 89-97
    Link Publication
  • 2007
    Title Computational Molecular Evolution—Ziheng Yang. 2006. Oxford University Press, Oxford. 376 pp. ISBN 978-0-19-856699-1 (ISBN-10 0-19-856699-9) £60 $115 (hardback). ISBN 978-0-19-856702-8 (ISBN-10 0-19-856702-2) £27.50 $52.50 (paperback).
    DOI 10.1080/10635150701752532
    Type Journal Article
    Author Vinh L
    Journal Systematic Biology
    Pages 1024-1026
    Link Publication
  • 2007
    Title Variations on RNA folding and alignment: lessons from Benasque
    DOI 10.1007/s00285-007-0107-5
    Type Journal Article
    Author Bompfünewerer A
    Journal Journal of Mathematical Biology
    Pages 129-144
  • 2007
    Title Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts
    DOI 10.1111/j.1365-313x.2007.03392.x
    Type Journal Article
    Author Simpson C
    Journal The Plant Journal
    Pages 1035-1048

Discovering
what
matters.

Newsletter

FWF-Newsletter Press-Newsletter Calendar-Newsletter Job-Newsletter scilog-Newsletter

Contact

Austrian Science Fund (FWF)
Georg-Coch-Platz 2
(Entrance Wiesingerstraße 4)
1010 Vienna

office(at)fwf.ac.at
+43 1 505 67 40

General information

  • Job Openings
  • Jobs at FWF
  • Press
  • Philanthropy
  • scilog
  • FWF Office
  • Social Media Directory
  • LinkedIn, external URL, opens in a new window
  • , external URL, opens in a new window
  • Facebook, external URL, opens in a new window
  • Instagram, external URL, opens in a new window
  • YouTube, external URL, opens in a new window
  • Cookies
  • Whistleblowing/Complaints Management
  • Accessibility Statement
  • Data Protection
  • Acknowledgements
  • IFG-Form
  • Social Media Directory
  • © Österreichischer Wissenschaftsfonds FWF
© Österreichischer Wissenschaftsfonds FWF