Wissenschaftsdisziplinen
Biologie (65%); Medizinisch-theoretische Wissenschaften, Pharmazie (35%)
Keywords
-
Alternative Splicing,
RNA editing,
RNA localization,
Mirna And Sirna In Translational Control,
Non-protein coding RNA,
Epigenetic gene silencing
Wir planen ein Doktorats-Kolleg mit einem RNA Biologie Schwerpunkt, das im Rahmen des "International PhD Program on Molecular Life Sciences at the Vienna Biocenter" durchgeführt werden soll . An diesem gemeinsamen PhD Programm des Campus Vienna Biocenter sind die Max F. Perutz Laboratories (Medizinische Universität Wien und Universität Wien), das Institut für Molekulare Pathologie (IMP) und zwei Institute der Österreichischen Akademie der Wissenschaften (IMBA und CeMM) beteiligt. Durch die Einbindung hervorragender Forschungsgruppen dieser Institutionen ist eine sehr gute Abdeckung vieler Aspekte der RNA Biologie gegeben. Diese Forschergruppen sind auch durch einige nationale und internationale Forschungsnetzwerke extrem gut in diesem Gebiet positioniert, sodass die PhD Studenten bestens mit ihren Forschungsprojekten eingebunden sind und durch die verbesserte Sichtbarkeit in ihrer Karriere gefördert werden. Dieses Doktoratskolleg deckt viele wichtige Aspekte des derzeit äußerst spannenden RNA Gebietes ab, wie zum Beispiel die Fragen, wie und mit welcher Hilfe die RNA in der Natur ihre korrekte Faltung erhält, wie RNA in spezialisierten Zellen lokalisiert, wie alternatives Spleißen und RNA editing das Proteom von höheren Eukaryonten erweitert, wie kleine nicht-kodierende RNAs die Genexpression regulieren und das Genom beeinflussen, und wie lang nicht-kodierend RNAs einzelne Genloci und sogar ganze Chromosome inaktivieren. Die gute Vernetzung der Forschergruppen am Vienna Biocenter und das multidiziplinäre Umfeld des Internationalen PhD Programmes ist vom grossen Vorteil für die Studenten sowohl was die wissenschaftliche Entwicklung anlangt als auch ihre zukünftige Karriere.
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
-
Konsortiumsmitglied (01.06.2007 - 30.11.2021)
- Medizinische Universität Wien
- Universität Wien
- Medizinische Universität Wien
- Universität Wien
- Universität Wien
- Universität Wien
- IMBA – Institut für Molekulare Biotechnologie GmbH
- Gregor Mendel Institute of Molecular Plant Biology
- Institut für Molekulare Pathologie - IMP
- Michael D. Nodine, Gregor Mendel Institute of Molecular Plant Biology , assoziierte:r Forschungspartner:in
- Julius Brennecke, IMBA – Institut für Molekulare Biotechnologie GmbH , assoziierte:r Forschungspartner:in
- Alexander Stark, Institut für Molekulare Pathologie - IMP , assoziierte:r Forschungspartner:in
- Boris Görke, Universität Wien , assoziierte:r Forschungspartner:in
Research Output
- 60982 Zitationen
- 360 Publikationen
-
2023
Titel Catabolite repression control protein antagonist, a novel player in Pseudomonas aeruginosa carbon catabolite repression control DOI 10.3389/fmicb.2023.1195558 Typ Journal Article Autor Sonnleitner E Journal Frontiers in Microbiology Seiten 1195558 Link Publikation -
2024
Titel A molecular switch orchestrates the nuclear export of human messenger RNA DOI 10.1101/2024.03.24.586400 Typ Preprint Autor Hohmann U Seiten 2024.03.24.586400 Link Publikation -
2024
Titel Evolutionary adaptation of an HP1-protein chromodomain integrates chromatin and DNA sequence signals DOI 10.7554/elife.93194 Typ Journal Article Autor Baumgartner L Journal eLife Link Publikation -
2020
Titel Poly(ADP-ribose) glycohydrolase promotes formation and homology-directed repair of meiotic DNA double-strand breaks independent of its catalytic activity DOI 10.1101/2020.03.12.988840 Typ Preprint Autor Janisiw E Seiten 2020.03.12.988840 Link Publikation -
2020
Titel YBEY is an essential biogenesis factor for mitochondrial ribosomes DOI 10.1093/nar/gkaa148 Typ Journal Article Autor Summer S Journal Nucleic Acids Research Seiten 9762-9786 Link Publikation -
2021
Titel Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex DOI 10.1101/gad.347989.120 Typ Journal Article Autor Schnabl J Journal Genes & Development Seiten 392-409 Link Publikation -
2021
Titel A SUMO-dependent regulatory switch connects the piRNA pathway to the heterochromatin machinery in Drosophila DOI 10.1101/2021.07.27.453956 Typ Preprint Autor Andreev V Seiten 2021.07.27.453956 Link Publikation -
2021
Titel A genetic toolkit for studying transposon control in the Drosophila melanogaster ovary DOI 10.1101/2021.06.29.450424 Typ Preprint Autor Elmaghraby M Seiten 2021.06.29.450424 Link Publikation -
2021
Titel Light regulates alternative splicing outcomes via the TOR kinase pathway DOI 10.1016/j.celrep.2021.109676 Typ Journal Article Autor Riegler S Journal Cell Reports Seiten 109676 Link Publikation -
2021
Titel A genetic toolkit for studying transposon control in the Drosophila melanogaster ovary DOI 10.1093/genetics/iyab179 Typ Journal Article Autor Elmaghraby M Journal Genetics Link Publikation -
2021
Titel Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing DOI 10.1093/nar/gkaa1260 Typ Journal Article Autor Fuchs A Journal Nucleic Acids Research Seiten 1133-1151 Link Publikation -
2021
Titel The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms DOI 10.1101/2021.11.24.469911 Typ Preprint Autor Kleinova R Seiten 2021.11.24.469911 Link Publikation -
2020
Titel Adaptor protein RapZ activates endoribonuclease RNase E by protein-protein interaction to cleave a small regulatory RNA DOI 10.1261/rna.074047.119 Typ Journal Article Autor Durica-Mitic S Journal RNA Link Publikation -
2020
Titel Distinctive Regulation of Carbapenem Susceptibility in Pseudomonas aeruginosa by Hfq DOI 10.3389/fmicb.2020.01001 Typ Journal Article Autor Sonnleitner E Journal Frontiers in Microbiology Seiten 1001 Link Publikation -
2019
Titel 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. DOI 10.12688/f1000research.18458.1 Typ Journal Article Autor Thiel B Journal F1000Research Link Publikation -
2023
Titel The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms DOI 10.1093/nar/gkad265 Typ Journal Article Autor Kleinova R Journal Nucleic Acids Research Seiten 4191-4207 Link Publikation -
2022
Titel Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq DOI 10.3389/fmicb.2022.919539 Typ Journal Article Autor Rozner M Journal Frontiers in Microbiology Seiten 919539 Link Publikation -
2022
Titel Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli DOI 10.1186/s13104-022-06061-9 Typ Journal Article Autor Nikolic N Journal BMC Research Notes Seiten 173 Link Publikation -
2022
Titel The Drosophila ZAD zinc finger protein Kipferl guides Rhino to piRNA clusters DOI 10.7554/elife.80067 Typ Journal Article Autor Baumgartner L Journal eLife Link Publikation -
2022
Titel Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site DOI 10.1080/15476286.2022.2058818 Typ Journal Article Autor Gosavi D Journal RNA Biology Seiten 496-506 Link Publikation -
2022
Titel Assembly principle of a membrane-anchored nuclear pore basket scaffold DOI 10.1126/sciadv.abl6863 Typ Journal Article Autor Cibulka J Journal Science Advances Link Publikation -
2022
Titel Panoramix SUMOylation on chromatin connects the piRNA pathway to the cellular heterochromatin machinery DOI 10.1038/s41594-022-00721-x Typ Journal Article Autor Andreev V Journal Nature Structural & Molecular Biology Seiten 130-142 -
2018
Titel RNA editing of Filamin A pre-mRNA regulates vascular contraction and diastolic blood pressure DOI 10.15252/embj.201694813 Typ Journal Article Autor Jain M Journal The EMBO Journal Link Publikation -
2018
Titel In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction DOI 10.1371/journal.pbio.2005129 Typ Journal Article Autor Uhse S Journal PLOS Biology Link Publikation -
2018
Titel RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates DOI 10.3390/genes9080392 Typ Journal Article Autor Thiel B Journal Genes Seiten 392 Link Publikation -
2018
Titel Hypoxia/reperfusion predisposes to atherosclerosis DOI 10.1371/journal.pone.0205067 Typ Journal Article Autor Finsterwalder R Journal PLOS ONE Link Publikation -
2018
Titel Analysis of 3' End Modifications in microRNAs by High-Throughput Sequencing DOI 10.1007/978-1-4939-8624-8_10 Typ Book Chapter Autor Reimão-Pinto M Verlag Springer Nature Seiten 115-139 -
2018
Titel Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations DOI 10.1093/nar/gky079 Typ Journal Article Autor Nikolic N Journal Nucleic Acids Research Link Publikation -
2018
Titel Harnessing Metabolic Regulation to Increase Hfq-Dependent Antibiotic Susceptibility in Pseudomonas aeruginosa DOI 10.3389/fmicb.2018.02709 Typ Journal Article Autor Pusic P Journal Frontiers in Microbiology Seiten 2709 Link Publikation -
2018
Titel Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor DOI 10.1093/nar/gky1164 Typ Journal Article Autor Kroupova A Journal Nucleic Acids Research Seiten 1030-1042 Link Publikation -
2018
Titel Light remote control of alternative splicing in roots through TOR kinase DOI 10.1101/472126 Typ Preprint Autor Riegler S Seiten 472126 Link Publikation -
2018
Titel Mutations in Cytosine-5 tRNA Methyltransferases Impact Mobile Element Expression and Genome Stability at Specific DNA Repeats DOI 10.1016/j.celrep.2018.01.061 Typ Journal Article Autor Genenncher B Journal Cell Reports Seiten 1861-1874 Link Publikation -
2017
Titel The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14 DOI 10.3389/fmicb.2017.02312 Typ Journal Article Autor Tata M Journal Frontiers in Microbiology Seiten 2312 Link Publikation -
2017
Titel MUW researcher of the month DOI 10.1007/s00508-017-1292-x Typ Journal Article Journal Wiener klinische Wochenschrift Seiten 913-914 -
2025
Titel An ATP-gated molecular switch orchestrates human mRNA export DOI 10.1038/s41586-025-09832-z Typ Journal Article Autor Hohmann U Journal Nature Seiten 1-9 -
2025
Titel Substrate and enzyme determinants for recognition by human mitochondrial RNase P DOI 10.1093/nar/gkaf1145 Typ Journal Article Autor Hazisllari E Journal Nucleic Acids Research Link Publikation -
2017
Titel Thiol-linked alkylation of RNA to assess expression dynamics DOI 10.1038/nmeth.4435 Typ Journal Article Autor Herzog V Journal Nature Methods Seiten 1198-1204 Link Publikation -
2018
Titel Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm DOI 10.1016/j.devcel.2018.06.023 Typ Journal Article Autor Sharma U Journal Developmental Cell Link Publikation -
2018
Titel The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A DOI 10.1111/tpj.13914 Typ Journal Article Autor Cavallari N Journal The Plant Journal Seiten 1010-1022 Link Publikation -
2018
Titel Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria DOI 10.1534/g3.117.300394 Typ Journal Article Autor Müller C Journal G3: Genes, Genomes, Genetics Seiten 1475-1480 Link Publikation -
2018
Titel Isolation and Characterization of Endogenous RNPs from Brain Tissues DOI 10.1007/978-1-4939-7213-5_28 Typ Book Chapter Autor Schieweck R Verlag Springer Nature Seiten 419-426 -
2020
Titel An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype DOI 10.1093/nar/gkaa025 Typ Journal Article Autor Bajad P Journal Nucleic Acids Research Seiten 3286-3303 Link Publikation -
2020
Titel Structure of the human core transcription-export complex reveals a hub for multivalent interactions DOI 10.7554/elife.61503 Typ Journal Article Autor Pühringer T Journal eLife Link Publikation -
2025
Titel Molecular basis of polyadenylated RNA fate determination in the nucleus DOI 10.1101/2025.09.16.676470 Typ Preprint Autor Bugai A Seiten 2025.09.16.676470 Link Publikation -
2024
Titel Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data DOI 10.1093/nar/gkae602 Typ Journal Article Autor Thiel B Journal Nucleic Acids Research Link Publikation -
2024
Titel Evolutionary adaptation of an HP1-protein chromodomain integrates chromatin and DNA sequence signals DOI 10.7554/elife.93194.3 Typ Journal Article Autor Baumgartner L Journal eLife Link Publikation -
2021
Titel Specific and Global RNA Regulators in Pseudomonas aeruginosa DOI 10.3390/ijms22168632 Typ Journal Article Autor Pusic P Journal International Journal of Molecular Sciences Seiten 8632 Link Publikation -
2021
Titel Gene Expression Profiling of Pseudomonas aeruginosa Upon Exposure to Colistin and Tobramycin DOI 10.3389/fmicb.2021.626715 Typ Journal Article Autor Sesso A Journal Frontiers in Microbiology Seiten 626715 Link Publikation -
2021
Titel Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa DOI 10.1093/nar/gkab510 Typ Journal Article Autor Malecka E Journal Nucleic Acids Research Seiten 7075-7087 Link Publikation -
2023
Titel Cleavage kinetics of human mitochondrial RNase P and contribution of its non-nuclease subunits DOI 10.1093/nar/gkad713 Typ Journal Article Autor Vilardo E Journal Nucleic Acids Research Seiten 10536-10550 Link Publikation -
2023
Titel RRIkinDP: Targeted RNA–RNA interaction kinetics DOI 10.1101/2023.07.28.548983 Typ Preprint Autor Waldl M Seiten 2023.07.28.548983 Link Publikation -
2023
Titel 3D Feasibility of 2D RNA-RNA Interaction Paths by stepwise Folding Simulations DOI 10.1261/rna.079756.123 Typ Journal Article Autor Beckmann I Journal RNA Link Publikation -
2020
Titel Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity DOI 10.1038/s41467-020-18693-1 Typ Journal Article Autor Janisiw E Journal Nature Communications Seiten 4869 Link Publikation -
2020
Titel ADAR-deficiency perturbs the global splicing landscape in mouse tissues DOI 10.1101/gr.256933.119 Typ Journal Article Autor Kapoor U Journal Genome Research Link Publikation -
2019
Titel Updated phylogeny of Chikungunya virus suggests lineage-specific RNA architecture DOI 10.1101/698522 Typ Preprint Autor De Bernardi Schneider A Seiten 698522 Link Publikation -
2019
Titel A Heterochromatin-Specific RNA Export Pathway Facilitates piRNA Production DOI 10.1016/j.cell.2019.07.007 Typ Journal Article Autor Elmaghraby M Journal Cell Link Publikation -
2019
Titel The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation DOI 10.1038/s41594-019-0270-6 Typ Journal Article Autor Batki J Journal Nature Structural & Molecular Biology Seiten 720-731 Link Publikation -
2019
Titel Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains DOI 10.1534/g3.118.200789 Typ Journal Article Autor Fablet M Journal G3: Genes, Genomes, Genetics Seiten 855-865 Link Publikation -
2019
Titel The embryonic transcriptome of Arabidopsis thaliana DOI 10.1007/s00497-018-00357-2 Typ Journal Article Autor Hofmann F Journal Plant Reproduction Seiten 77-91 Link Publikation -
2019
Titel Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signalling DOI 10.1038/s42255-019-0033-z Typ Journal Article Autor Finger F Journal Nature Metabolism Seiten 350-359 Link Publikation -
2019
Titel VARIFI—Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data DOI 10.3390/jpm9010010 Typ Journal Article Autor Krunic M Journal Journal of Personalized Medicine Seiten 10 Link Publikation -
2019
Titel The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation DOI 10.1101/609693 Typ Preprint Autor Batki J Seiten 609693 Link Publikation -
2019
Titel MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis DOI 10.1101/633735 Typ Preprint Autor Plotnikova A Seiten 633735 Link Publikation -
2019
Titel Conserved Secondary Structures in Viral mRNAs DOI 10.3390/v11050401 Typ Journal Article Autor Kiening M Journal Viruses Seiten 401 Link Publikation -
2019
Titel YBEY is an essential biogenesis factor for mitochondrial ribosomes DOI 10.1101/2019.12.13.874362 Typ Preprint Autor Summer S Seiten 2019.12.13.874362 Link Publikation -
2019
Titel A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing DOI 10.1101/gr.242636.118 Typ Journal Article Autor Licht K Journal Genome Research Seiten 1453-1463 Link Publikation -
2019
Titel STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries DOI 10.1002/cpmb.105 Typ Journal Article Autor Neumayr C Journal Current Protocols in Molecular Biology Link Publikation -
2019
Titel Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis DOI 10.1016/j.molcel.2019.06.018 Typ Journal Article Autor Reichholf B Journal Molecular Cell Link Publikation -
2024
Titel The FinO/ProQ-like protein PA2582 impacts antimicrobial resistance in Pseudomonas aeruginosa DOI 10.3389/fmicb.2024.1422742 Typ Journal Article Autor Sesso A Journal Frontiers in Microbiology Seiten 1422742 Link Publikation -
2019
Titel Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions DOI 10.1002/cppb.20097 Typ Journal Article Autor Uhse S Journal Current Protocols in Plant Biology Link Publikation -
2019
Titel 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. DOI 10.12688/f1000research.18458.2 Typ Journal Article Autor Thiel B Journal F1000Research Link Publikation -
2015
Titel AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana DOI 10.1111/nph.13545 Typ Journal Article Autor Zhang R Journal New Phytologist Seiten 96-101 Link Publikation -
2015
Titel Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity DOI 10.1101/gr.186585.114 Typ Journal Article Autor Marquez Y Journal Genome Research Seiten 995-1007 Link Publikation -
2011
Titel RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data DOI 10.1261/rna.2536111 Typ Journal Article Autor Washietl S Journal RNA Seiten 578-594 Link Publikation -
2011
Titel A Genome-Wide RNAi Screen for Factors Involved in Neuronal Specification in Caenorhabditis elegans DOI 10.1371/journal.pgen.1002109 Typ Journal Article Autor Poole R Journal PLoS Genetics Link Publikation -
2011
Titel Another place, another timer: Marine species and the rhythms of life DOI 10.1002/bies.201000096 Typ Journal Article Autor Tessmar-Raible K Journal BioEssays Seiten 165-172 Link Publikation -
2011
Titel A folding algorithm for extended RNA secondary structures DOI 10.1093/bioinformatics/btr220 Typ Journal Article Autor Zu Siederdissen C Journal Bioinformatics Link Publikation -
2011
Titel Extra-embryonic-specific imprinted expression is restricted to defined lineages in the post-implantation embryo DOI 10.1016/j.ydbio.2011.02.017 Typ Journal Article Autor Hudson Q Journal Developmental Biology Seiten 420-431 Link Publikation -
2011
Titel Localization and Dynamics of Nuclear Speckles in Plants DOI 10.1104/pp.111.186700 Typ Journal Article Autor Reddy A Journal Plant Physiology Seiten 67-77 Link Publikation -
2011
Titel Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering DOI 10.1016/j.jbiotec.2011.02.011 Typ Journal Article Autor Hackl M Journal Journal of Biotechnology Seiten 62-75 Link Publikation -
2011
Titel Forward and Reverse Genetics through Derivation of Haploid Mouse Embryonic Stem Cells DOI 10.1016/j.stem.2011.10.012 Typ Journal Article Autor Elling U Journal Cell Stem Cell Seiten 563-574 Link Publikation -
2011
Titel Neural-specific elongation of 3' UTRs during Drosophila development DOI 10.1073/pnas.1112672108 Typ Journal Article Autor Hilgers V Journal Proceedings of the National Academy of Sciences Seiten 15864-15869 Link Publikation -
2011
Titel A computational pipeline for comparative ChIP-seq analyses DOI 10.1038/nprot.2011.420 Typ Journal Article Autor Bardet A Journal Nature Protocols Seiten 45-61 -
2011
Titel Fast accessibility-based prediction of RNA–RNA interactions DOI 10.1093/bioinformatics/btr281 Typ Journal Article Autor Tafer H Journal Bioinformatics Seiten 1934-1940 Link Publikation -
2011
Titel Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli DOI 10.1016/j.cell.2011.07.047 Typ Journal Article Autor Vesper O Journal Cell Seiten 147-157 Link Publikation -
2011
Titel Finding aptamers and small ribozymes in unexpected places DOI 10.1002/wrna.105 Typ Journal Article Autor Matylla-Kulinska K Journal Wiley Interdisciplinary Reviews: RNA Seiten 73-91 -
2011
Titel A high-resolution map of human evolutionary constraint using 29 mammals DOI 10.1038/nature10530 Typ Journal Article Autor Lindblad-Toh K Journal Nature Seiten 476-482 Link Publikation -
2011
Titel A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors DOI 10.1038/emboj.2011.308 Typ Journal Article Autor Handler D Journal The EMBO Journal Seiten 3977-3993 Link Publikation -
2011
Titel Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq DOI 10.1093/nar/gkq1346 Typ Journal Article Autor Beich-Frandsen M Journal Nucleic Acids Research Seiten 4900-4915 Link Publikation -
2011
Titel ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods DOI 10.1093/molbev/msr220 Typ Journal Article Autor Nguyen M Journal Molecular Biology and Evolution Seiten 663-673 Link Publikation -
2011
Titel A genome-scale shRNA resource for transgenic RNAi in Drosophila DOI 10.1038/nmeth.1592 Typ Journal Article Autor Ni J Journal Nature Methods Seiten 405-407 Link Publikation -
2011
Titel A Consistent Phylogenetic Backbone for the Fungi DOI 10.1093/molbev/msr285 Typ Journal Article Autor Ebersberger I Journal Molecular Biology and Evolution Seiten 1319-1334 Link Publikation -
2011
Titel The 3'-to-5' Exoribonuclease Nibbler Shapes the 3' Ends of MicroRNAs Bound to Drosophila Argonaute1 DOI 10.1016/j.cub.2011.09.034 Typ Journal Article Autor Han B Journal Current Biology Seiten 1878-1887 Link Publikation -
2011
Titel Temporal and Spatial Regulation of MicroRNA Activity with Photoactivatable Cantimirs DOI 10.1021/cb200290e Typ Journal Article Autor Zheng G Journal ACS Chemical Biology Seiten 1332-1338 Link Publikation -
2011
Titel Animal snoRNAs and scaRNAs with exceptional structures DOI 10.4161/rna.8.6.16603 Typ Journal Article Autor Marz M Journal RNA Biology Seiten 938-946 Link Publikation -
2011
Titel HSPC117 Is the Essential Subunit of a Human tRNA Splicing Ligase Complex DOI 10.1126/science.1197847 Typ Journal Article Autor Popow J Journal Science Seiten 760-764 Link Publikation -
2011
Titel Maternally Inherited Essential Hypertension Is Associated With the Novel 4263A>G Mutation in the Mitochondrial tRNAIle Gene in a Large Han Chinese Family DOI 10.1161/circresaha.110.231811 Typ Journal Article Autor Wang S Journal Circulation Research Seiten 862-870 -
2011
Titel ViennaRNA Package 2.0 DOI 10.1186/1748-7188-6-26 Typ Journal Article Autor Lorenz R Journal Algorithms for Molecular Biology Seiten 26 Link Publikation -
2013
Titel TeloTool: a new tool for telomere length measurement from terminal restriction fragment analysis with improved probe intensity correction DOI 10.1093/nar/gkt1315 Typ Journal Article Autor Göhring J Journal Nucleic Acids Research Link Publikation -
2013
Titel Complexity of the Alternative Splicing Landscape in Plants DOI 10.1105/tpc.113.117523 Typ Journal Article Autor Reddy A Journal The Plant Cell Seiten 3657-3683 Link Publikation -
2013
Titel Translation initiation in the crenarchaeon Sulfolobus solfataricus: eukaryotic features but bacterial route DOI 10.1042/bst20120300 Typ Journal Article Autor La Teana A Journal Biochemical Society Transactions Seiten 350-355 -
2012
Titel Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos DOI 10.1038/nature10756 Typ Journal Article Autor Nodine M Journal Nature Seiten 94-97 Link Publikation -
2012
Titel Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis DOI 10.1371/journal.pone.0041528 Typ Journal Article Autor Dinh H Journal PLoS ONE Link Publikation -
2012
Titel Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity DOI 10.1093/nar/gks1252 Typ Journal Article Autor Bannikova O Journal Nucleic Acids Research Seiten 1783-1796 Link Publikation -
2012
Titel Symmetric circular matchings and RNA folding DOI 10.1016/j.disc.2011.06.004 Typ Journal Article Autor Hofacker I Journal Discrete Mathematics Seiten 100-112 Link Publikation -
2012
Titel Embryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans DOI 10.1016/j.cell.2012.10.049 Typ Journal Article Autor Cochella L Journal Cell Seiten 1229-1242 Link Publikation -
2012
Titel Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena DOI 10.1101/gad.196493.112 Typ Journal Article Autor Schoeberl U Journal Genes & Development Seiten 1729-1742 Link Publikation -
2012
Titel A Histone Deacetylase Adjusts Transcription Kinetics at Coding Sequences during Candida albicans Morphogenesis DOI 10.1371/journal.pgen.1003118 Typ Journal Article Autor Hnisz D Journal PLoS Genetics Link Publikation -
2012
Titel A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase—extensive moonlighting in mitochondrial tRNA biogenesis DOI 10.1093/nar/gks910 Typ Journal Article Autor Vilardo E Journal Nucleic Acids Research Seiten 11583-11593 Link Publikation -
2012
Titel Stable transgenesis in the marine annelid Platynereis dumerilii sheds new light on photoreceptor evolution DOI 10.1073/pnas.1209657109 Typ Journal Article Autor Backfisch B Journal Proceedings of the National Academy of Sciences Seiten 193-198 Link Publikation -
2012
Titel A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity DOI 10.1126/science.1225829 Typ Journal Article Autor Jinek M Journal Science Seiten 816-821 Link Publikation -
2012
Titel Do we still need supertrees? DOI 10.1186/1741-7007-10-13 Typ Journal Article Autor Von Haeseler A Journal BMC Biology Seiten 13 Link Publikation -
2012
Titel Nuclear RNase P of Trypanosoma brucei: A Single Protein in Place of the Multicomponent RNA-Protein Complex DOI 10.1016/j.celrep.2012.05.021 Typ Journal Article Autor Taschner A Journal Cell Reports Seiten 19-25 Link Publikation -
2012
Titel tRNA Processing by Protein-Only versus RNA-Based RNase P: Kinetic Analysis Reveals Mechanistic Differences DOI 10.1002/cbic.201200434 Typ Journal Article Autor Pavlova L Journal ChemBioChem Seiten 2270-2276 -
2012
Titel Structural and Biochemical Studies on ATP Binding and Hydrolysis by the Escherichia coli RNA Chaperone Hfq DOI 10.1371/journal.pone.0050892 Typ Journal Article Autor Hämmerle H Journal PLoS ONE Link Publikation -
2012
Titel Transcript Diversification in the Nervous System: A to I RNA Editing in CNS Function and Disease Development DOI 10.3389/fnins.2012.00099 Typ Journal Article Autor Tariq A Journal Frontiers in Neuroscience Seiten 99 Link Publikation -
2012
Titel REvolver: Modeling Sequence Evolution under Domain Constraints DOI 10.1093/molbev/mss078 Typ Journal Article Autor Koestler T Journal Molecular Biology and Evolution Seiten 2133-2145 Link Publikation -
2012
Titel Structural flexibility of RNA as molecular basis for Hfq chaperone function DOI 10.1093/nar/gks510 Typ Journal Article Autor De Almeida Ribeiro E Journal Nucleic Acids Research Seiten 8072-8084 Link Publikation -
2012
Titel Benefit-of-doubt (BOD) scoring: A sequencing-based method for SNP candidate assessment from high to medium read number data sets DOI 10.1016/j.ygeno.2012.12.001 Typ Journal Article Autor Sedlazeck F Journal Genomics Seiten 204-209 Link Publikation -
2012
Titel An Asymmetrically Localized Staufen2-Dependent RNA Complex Regulates Maintenance of Mammalian Neural Stem Cells DOI 10.1016/j.stem.2012.06.010 Typ Journal Article Autor Vessey J Journal Cell Stem Cell Seiten 517-528 Link Publikation -
2012
Titel Chapter five Diverse Functions of MicroRNAs in Nervous System Development DOI 10.1016/b978-0-12-387038-4.00005-7 Typ Book Chapter Autor Cochella L Verlag Elsevier Seiten 115-143 -
2012
Titel Alternative splicing in plants – coming of age DOI 10.1016/j.tplants.2012.06.001 Typ Journal Article Autor Syed N Journal Trends in Plant Science Seiten 616-623 Link Publikation -
2012
Titel Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing DOI 10.1126/science.1228110 Typ Journal Article Autor Latos P Journal Science Seiten 1469-1472 -
2017
Titel Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes DOI 10.1093/nar/gkx405 Typ Journal Article Autor Gößringer M Journal Nucleic Acids Research Seiten 7441-7454 Link Publikation -
2017
Titel A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing DOI 10.1093/nar/gkx267 Typ Journal Article Autor Zhang R Journal Nucleic Acids Research Seiten 5061-5073 Link Publikation -
2017
Titel RNA in Disease and development DOI 10.1080/15476286.2017.1316929 Typ Journal Article Autor Barta A Journal RNA Biology Seiten 457-459 Link Publikation -
2017
Titel Genome-wide identification of intrasplicing events in the human transcriptome and hints to their regulatory potential DOI 10.1101/159350 Typ Preprint Autor Radtke M Seiten 159350 Link Publikation -
2017
Titel Promoting transcription over long distances DOI 10.1038/ng.3904 Typ Journal Article Autor Catarino R Journal Nature Genetics Seiten 972-973 -
2017
Titel Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets DOI 10.1105/tpc.16.00845 Typ Journal Article Autor Schon M Journal The Plant Cell Seiten 608-617 Link Publikation -
2017
Titel A to I editing in disease is not fake news DOI 10.1080/15476286.2017.1306173 Typ Journal Article Autor Bajad P Journal RNA Biology Seiten 1223-1231 Link Publikation -
2009
Titel Sus1, Cdc31, and the Sac3 CID Region Form a Conserved Interaction Platform that Promotes Nuclear Pore Association and mRNA Export DOI 10.1016/j.molcel.2009.01.033 Typ Journal Article Autor Jani D Journal Molecular Cell Seiten 727-737 Link Publikation -
2009
Titel A Toolkit and Robust Pipeline for the Generation of Fosmid-Based Reporter Genes in C. elegans DOI 10.1371/journal.pone.0004625 Typ Journal Article Autor Tursun B Journal PLoS ONE Link Publikation -
2009
Titel 2'-O-methylation stabilizes Piwi-associated small RNAs and ensures DNA elimination in Tetrahymena DOI 10.1261/rna.1455509 Typ Journal Article Autor Kurth H Journal RNA Seiten 675-685 Link Publikation -
2009
Titel Central control of fever and female body temperature by RANKL/RANK DOI 10.1038/nature08596 Typ Journal Article Autor Hanada R Journal Nature Seiten 505-509 -
2009
Titel tRNA recognition, processing, and disease: Hypotheses around an unorthodox type of RNase P in human mitochondria DOI 10.1016/j.mito.2009.03.008 Typ Journal Article Autor Holzmann J Journal Mitochondrion Seiten 284-288 Link Publikation -
2009
Titel Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information DOI 10.1016/j.gde.2009.10.006 Typ Journal Article Autor Meireles-Filho A Journal Current Opinion in Genetics & Development Seiten 565-570 -
2009
Titel A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis DOI 10.1038/ncb1876 Typ Journal Article Autor Siegel G Journal Nature Cell Biology Seiten 705-716 Link Publikation -
2009
Titel Neuron-type specific regulation of a 3'UTR through redundant and combinatorially acting cis-regulatory elements DOI 10.1261/rna.1931510 Typ Journal Article Autor Didiano D Journal RNA Seiten 349-363 Link Publikation -
2009
Titel Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection DOI 10.1126/science.1173164 Typ Journal Article Autor Cronin S Journal Science Seiten 340-343 Link Publikation -
2009
Titel Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform DOI 10.1261/rna.1611309 Typ Journal Article Autor Zhou R Journal RNA Seiten 1886-1895 Link Publikation -
2009
Titel TonB-dependent transporters and their occurrence in cyanobacteria DOI 10.1186/1741-7007-7-68 Typ Journal Article Autor Mirus O Journal BMC Biology Seiten 68 Link Publikation -
2009
Titel A Phylogenomic Approach to Resolve the Basal Pterygote Divergence DOI 10.1093/molbev/msp191 Typ Journal Article Autor Simon S Journal Molecular Biology and Evolution Seiten 2719-2730 Link Publikation -
2009
Titel Evolutionarily evolved discriminators in the 3-TPR domain of the Toc64 family involved in protein translocation at the outer membrane of chloroplasts and mitochondria DOI 10.1007/s00894-008-0449-y Typ Journal Article Autor Mirus O Journal Journal of Molecular Modeling Seiten 971 -
2009
Titel Taxon Selection under Split Diversity DOI 10.1093/sysbio/syp058 Typ Journal Article Autor Minh B Journal Systematic Biology Seiten 586-594 Link Publikation -
2009
Titel Loss of matKRNA editing in seed plant chloroplasts DOI 10.1186/1471-2148-9-201 Typ Journal Article Autor Tillich M Journal BMC Evolutionary Biology Seiten 201 Link Publikation -
2009
Titel An in vitro ES cell imprinting model shows that imprinted expression of the Igf2r gene arises from an allele-specific expression bias DOI 10.1242/dev.032060 Typ Journal Article Autor Latos P Journal Development Seiten 437-448 Link Publikation -
2009
Titel RNA Secondary Structure Analysis Using the Vienna RNA Package DOI 10.1002/0471250953.bi1202s26 Typ Journal Article Autor Hofacker I Journal Current Protocols in Bioinformatics Seiten 12.2.1-12.2.16 -
2009
Titel Tetrahymena Meiotic Nuclear Reorganization Is Induced by a Checkpoint Kinase–dependent Response to DNA Damage DOI 10.1091/mbc.e08-10-1058 Typ Journal Article Autor Loidl J Journal Molecular Biology of the Cell Seiten 2428-2437 Link Publikation -
2009
Titel Coherent but overlapping expression of microRNAs and their targets during vertebrate development DOI 10.1101/gad.1745709 Typ Journal Article Autor Shkumatava A Journal Genes & Development Seiten 466-481 Link Publikation -
2009
Titel Two GW Repeat Proteins Interact with Tetrahymena thermophila Argonaute and Promote Genome Rearrangement DOI 10.1128/mcb.00076-09 Typ Journal Article Autor Bednenko J Journal Molecular and Cellular Biology Seiten 5020-5030 Link Publikation -
2009
Titel Processing mitochondrial (t)RNAs: New enzyme, old job DOI 10.4161/cc.8.11.8502 Typ Journal Article Autor Rossmanith W Journal Cell Cycle Seiten 1650-1653 Link Publikation -
2009
Titel Accurate Prediction of Peptide Binding Sites on Protein Surfaces DOI 10.1371/journal.pcbi.1000335 Typ Journal Article Autor Petsalaki E Journal PLoS Computational Biology Link Publikation -
2009
Titel Structural Basis for the Interaction between Yeast Spt-Ada-Gcn5 Acetyltransferase (SAGA) Complex Components Sgf11 and Sus12 DOI 10.1074/jbc.m109.070839 Typ Journal Article Autor Ellisdon A Journal Journal of Biological Chemistry Seiten 3850-3856 Link Publikation -
2009
Titel Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life DOI 10.1128/jb.00923-09 Typ Journal Article Autor Krauss U Journal Journal of Bacteriology Seiten 7234-7242 Link Publikation -
2009
Titel Histone modifications at human enhancers reflect global cell-type-specific gene expression DOI 10.1038/nature07829 Typ Journal Article Autor Heintzman N Journal Nature Seiten 108-112 Link Publikation -
2009
Titel MicroRNAs Cross the Line: The Battle for mRNA Stability Enters the Coding Sequence DOI 10.1016/j.molcel.2009.07.006 Typ Journal Article Autor Nielsen A Journal Molecular Cell Seiten 139-140 Link Publikation -
2008
Titel Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools DOI 10.1099/mic.0.2008/019703-0 Typ Journal Article Autor Sonnleitner E Journal Microbiology Seiten 3175-3187 Link Publikation -
2008
Titel A Single Mutation in the IF3 N-Terminal Domain Perturbs the Fidelity of Translation Initiation at Three Levels DOI 10.1016/j.jmb.2008.09.012 Typ Journal Article Autor Maar D Journal Journal of Molecular Biology Seiten 937-944 -
2008
Titel Antimicrobial activity of a chimeric enzybiotic towards Staphylococcus aureus DOI 10.1016/j.jbiotec.2008.09.003 Typ Journal Article Autor Manoharadas S Journal Journal of Biotechnology Seiten 118-123 -
2008
Titel Knowledge Acquisition Focused Cooperative Development of Bio-ontologies – A Case Study with BIO2Me DOI 10.1007/978-3-540-70600-7_20 Typ Book Chapter Autor Mainz D Verlag Springer Nature Seiten 258-272 -
2008
Titel Beyond energy minimization: approaches to the kinetic folding of RNA DOI 10.1007/s00706-008-0895-3 Typ Journal Article Autor Flamm C Journal Monatshefte für Chemie - Chemical Monthly Seiten 447-457 Link Publikation -
2008
Titel Specificity of ADAR-mediated RNA editing in newly identified targets DOI 10.1261/rna.923308 Typ Journal Article Autor Riedmann E Journal RNA Seiten 1110-1118 Link Publikation -
2008
Titel Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers DOI 10.1186/1479-5876-6-69 Typ Journal Article Autor Rohrbeck A Journal Journal of Translational Medicine Seiten 69 Link Publikation -
2008
Titel Visualization of Barrier Tree Sequences Revisited DOI 10.1007/978-3-540-72630-2_16 Typ Book Chapter Autor Heine C Verlag Springer Nature Seiten 275-290 -
2008
Titel H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome DOI 10.1101/gr.080861.108 Typ Journal Article Autor Pauler F Journal Genome Research Seiten 221-233 Link Publikation -
2008
Titel An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing DOI 10.1126/science.1165171 Typ Journal Article Autor Brennecke J Journal Science Seiten 1387-1392 Link Publikation -
2008
Titel An endogenous small interfering RNA pathway in Drosophila DOI 10.1038/nature07007 Typ Journal Article Autor Czech B Journal Nature Seiten 798-802 Link Publikation -
2008
Titel Plant SR Proteins and Their Functions DOI 10.1007/978-3-540-76776-3_5 Typ Book Chapter Autor Barta A Verlag Springer Nature Seiten 83-102 -
2008
Titel Comment on ‘A congruence index for testing topological similarity between trees’ DOI 10.1093/bioinformatics/btn539 Typ Journal Article Autor Kupczok A Journal Bioinformatics Seiten 147-149 Link Publikation -
2008
Titel DNA double-strand breaks, but not crossovers, are required for the reorganization of meiotic nuclei in Tetrahymena DOI 10.1242/jcs.031799 Typ Journal Article Autor Mochizuki K Journal Journal of Cell Science Seiten 2148-2158 Link Publikation -
2008
Titel Budgeted Phylogenetic Diversity on Circular Split Systems DOI 10.1109/tcbb.2008.54 Typ Journal Article Autor Minh B Journal IEEE/ACM Transactions on Computational Biology and Bioinformatics Seiten 22-29 -
2008
Titel Silencing and transcriptional properties of the imprinted Airn ncRNA are independent of the endogenous promoter DOI 10.1038/emboj.2008.239 Typ Journal Article Autor Stricker S Journal The EMBO Journal Seiten 3116-3128 Link Publikation -
2008
Titel The impact of target site accessibility on the design of effective siRNAs DOI 10.1038/nbt1404 Typ Journal Article Autor Tafer H Journal Nature Biotechnology Seiten 578-583 -
2008
Titel RNAplex: a fast tool for RNA–RNA interaction search DOI 10.1093/bioinformatics/btn193 Typ Journal Article Autor Tafer H Journal Bioinformatics Seiten 2657-2663 Link Publikation -
2008
Titel Dynamic Interaction between P-Bodies and Transport Ribonucleoprotein Particles in Dendrites of Mature Hippocampal Neurons DOI 10.1523/jneurosci.0104-08.2008 Typ Journal Article Autor Zeitelhofer M Journal The Journal of Neuroscience Seiten 7555-7562 Link Publikation -
2008
Titel Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader DOI 10.1261/rna.603108 Typ Journal Article Autor Resch A Journal RNA Seiten 454-459 Link Publikation -
2008
Titel SINE RNA Induces Severe Developmental Defects in Arabidopsis thaliana and Interacts with HYL1 (DRB1), a Key Member of the DCL1 Complex DOI 10.1371/journal.pgen.1000096 Typ Journal Article Autor Pouch-Pélissier M Journal PLoS Genetics Link Publikation -
2008
Titel Study of an RNA helicase implicates small RNA–noncoding RNA interactions in programmed DNA elimination in Tetrahymena DOI 10.1101/gad.481908 Typ Journal Article Autor Aronica L Journal Genes & Development Seiten 2228-2241 Link Publikation -
2008
Titel Conservation of small RNA pathways in platypus DOI 10.1101/gr.073056.107 Typ Journal Article Autor Murchison E Journal Genome Research Seiten 995-1004 Link Publikation -
2008
Titel www.rnaworkbench.com: A new program for analyzing RNA interference DOI 10.1016/j.cmpb.2007.12.001 Typ Journal Article Autor Vareková R Journal Computer Methods and Programs in Biomedicine Seiten 89-94 -
2008
Titel Genome analysis of the platypus reveals unique signatures of evolution DOI 10.1038/nature06936 Typ Journal Article Autor Warren W Journal Nature Seiten 175-183 Link Publikation -
2008
Titel Target site effects in the RNA interference and microRNA pathways DOI 10.1042/bst0361216 Typ Journal Article Autor Obernosterer G Journal Biochemical Society Transactions Seiten 1216-1219 Link Publikation -
2008
Titel Identification of the human homolog of the imprinted mouse Air non-coding RNA DOI 10.1016/j.ygeno.2008.08.004 Typ Journal Article Autor Yotova I Journal Genomics Seiten 464-473 Link Publikation -
2008
Titel The Vienna RNA Websuite DOI 10.1093/nar/gkn188 Typ Journal Article Autor Gruber A Journal Nucleic Acids Research Link Publikation -
2008
Titel Crystal Structure of the Intact Archaeal Translation Initiation Factor 2 Demonstrates Very High Conformational Flexibility in the a- and ß-Subunits DOI 10.1016/j.jmb.2008.07.039 Typ Journal Article Autor Stolboushkina E Journal Journal of Molecular Biology Seiten 680-691 -
2008
Titel Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis DOI 10.1021/pr8000173 Typ Journal Article Autor Van Bentem S Journal Journal of Proteome Research Seiten 2458-2470 -
2008
Titel High efficiency transformation of Tetrahymena using a codon-optimized neomycin resistance gene DOI 10.1016/j.gene.2008.08.007 Typ Journal Article Autor Mochizuki K Journal Gene Seiten 79-83 -
2011
Titel From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs DOI 10.1371/journal.pcbi.1002100 Typ Journal Article Autor Gorodkin J Journal PLoS Computational Biology Link Publikation -
2011
Titel Localization of Human RNase Z Isoforms: Dual Nuclear/Mitochondrial Targeting of the ELAC2 Gene Product by Alternative Translation Initiation DOI 10.1371/journal.pone.0019152 Typ Journal Article Autor Rossmanith W Journal PLoS ONE Link Publikation -
2011
Titel A few standing for many: embryo receptor-like kinases DOI 10.1016/j.tplants.2011.01.005 Typ Journal Article Autor Nodine M Journal Trends in Plant Science Seiten 211-217 -
2011
Titel An RNA-Seq Strategy to Detect the Complete Coding and Non-Coding Transcriptome Including Full-Length Imprinted Macro ncRNAs DOI 10.1371/journal.pone.0027288 Typ Journal Article Autor Huang R Journal PLoS ONE Link Publikation -
2011
Titel Of P and Z: Mitochondrial tRNA processing enzymes DOI 10.1016/j.bbagrm.2011.11.003 Typ Journal Article Autor Rossmanith W Journal Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms Seiten 1017-1026 Link Publikation -
2011
Titel A structural determinant required for RNA editing DOI 10.1093/nar/gkr144 Typ Journal Article Autor Tian N Journal Nucleic Acids Research Seiten 5669-5681 Link Publikation -
2011
Titel Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis DOI 10.1093/nar/gkr932 Typ Journal Article Autor Kalyna M Journal Nucleic Acids Research Seiten 2454-2469 Link Publikation -
2011
Titel Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation DOI 10.1038/msb.2011.93 Typ Journal Article Autor Kratochvill F Journal Molecular Systems Biology Link Publikation -
2011
Titel Structural analysis of full-length Hfq from Escherichia coli DOI 10.1107/s174430911100786x Typ Journal Article Autor Beich-Frandsen M Journal Acta Crystallographica Section F: Structural Biology and Crystallization Communications Seiten 536-40 Link Publikation -
2011
Titel The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation DOI 10.1093/nar/gkq1339 Typ Journal Article Autor Doetsch M Journal Nucleic Acids Research Seiten 4405-4418 Link Publikation -
2011
Titel High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species DOI 10.1038/ng.808 Typ Journal Article Autor He Q Journal Nature Genetics Seiten 414-420 -
2010
Titel Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway DOI 10.1073/pnas.1003953107 Typ Journal Article Autor Zheng K Journal Proceedings of the National Academy of Sciences Seiten 11841-11846 Link Publikation -
2010
Titel ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction DOI 10.1007/978-3-642-15461-4_32 Typ Book Chapter Autor Dinh H Verlag Springer Nature Seiten 360-367 -
2010
Titel Random Tree-Puzzle Leads to the Yule–Harding Distribution DOI 10.1093/molbev/msq212 Typ Journal Article Autor Vinh L Journal Molecular Biology and Evolution Seiten 873-877 Link Publikation -
2010
Titel Target RNA–Directed Trimming and Tailing of Small Silencing RNAs DOI 10.1126/science.1187058 Typ Journal Article Autor Ameres S Journal Science Seiten 1534-1539 Link Publikation -
2010
Titel A Phylogenomic Approach to Resolve the Arthropod Tree of Life DOI 10.1093/molbev/msq130 Typ Journal Article Autor Meusemann K Journal Molecular Biology and Evolution Seiten 2451-2464 Link Publikation -
2010
Titel Mammalian Pumilio 2 regulates dendrite morphogenesis and synaptic function DOI 10.1073/pnas.0907128107 Typ Journal Article Autor Vessey J Journal Proceedings of the National Academy of Sciences Seiten 3222-3227 Link Publikation -
2010
Titel Hybridization thermodynamics of NimbleGen Microarrays DOI 10.1186/1471-2105-11-35 Typ Journal Article Autor Mueckstein U Journal BMC Bioinformatics Seiten 35 Link Publikation -
2010
Titel Three consecutive generations of nephridia occur during development of Platynereis dumerilii (Annelida, Polychaeta) DOI 10.1002/dvdy.22331 Typ Journal Article Autor Hasse C Journal Developmental Dynamics Seiten 1967-1976 Link Publikation -
2010
Titel Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins DOI 10.1261/rna.2498411 Typ Journal Article Autor Ameres S Journal RNA Seiten 54-63 Link Publikation -
2010
Titel MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment DOI 10.1093/molbev/msq180 Typ Journal Article Autor Nguyen M Journal Molecular Biology and Evolution Seiten 143-152 Link Publikation -
2010
Titel Quantitative detection and typing of hepatitis D virus in human serum by real-time polymerase chain reaction and melting curve analysis DOI 10.1016/j.diagmicrobio.2010.02.003 Typ Journal Article Autor Hofmann J Journal Diagnostic Microbiology and Infectious Disease Seiten 172-179 -
2010
Titel Implementing a Rational and Consistent Nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR Proteins) in Plants DOI 10.1105/tpc.110.078352 Typ Journal Article Autor Barta A Journal The Plant Cell Seiten 2926-2929 Link Publikation -
2010
Titel The piRNA pathway: a fly's perspective on the guardian of the genome DOI 10.1016/j.tig.2010.08.007 Typ Journal Article Autor Senti K Journal Trends in Genetics Seiten 499-509 Link Publikation -
2010
Titel Accuracy of phylogeny reconstruction methods combining overlapping gene data sets DOI 10.1186/1748-7188-5-37 Typ Journal Article Autor Kupczok A Journal Algorithms for Molecular Biology Seiten 37 Link Publikation -
2010
Titel Genomic SELEX: A discovery tool for genomic aptamers DOI 10.1016/j.ymeth.2010.06.004 Typ Journal Article Autor Zimmermann B Journal Methods Seiten 125-132 Link Publikation -
2010
Titel Modules for C-terminal epitope tagging of Tetrahymena genes DOI 10.1016/j.mimet.2010.07.009 Typ Journal Article Autor Kataoka K Journal Journal of Microbiological Methods Seiten 342-346 Link Publikation -
2010
Titel Establishment of a Cre/loxP recombination system for N-terminal epitope tagging of genes in Tetrahymena DOI 10.1186/1471-2180-10-191 Typ Journal Article Autor Busch C Journal BMC Microbiology Seiten 191 Link Publikation -
2010
Titel Discriminatory power of RNA family models DOI 10.1093/bioinformatics/btq370 Typ Journal Article Autor Siederdissen C Journal Bioinformatics Link Publikation -
2010
Titel Developmental gene regulation in the era of genomics DOI 10.1016/j.ydbio.2009.12.039 Typ Journal Article Autor Zeitlinger J Journal Developmental Biology Seiten 230-239 -
2010
Titel Regulation of plant gene expression by alternative splicing DOI 10.1042/bst0380667 Typ Journal Article Autor Simpson C Journal Biochemical Society Transactions Seiten 667-671 -
2010
Titel A single Arabidopsis organellar protein has RNase P activity DOI 10.1038/nsmb.1812 Typ Journal Article Autor Gobert A Journal Nature Structural & Molecular Biology Seiten 740-744 -
2010
Titel Hedgehog Signaling Regulates Segment Formation in the Annelid Platynereis DOI 10.1126/science.1188913 Typ Journal Article Autor Dray N Journal Science Seiten 339-342 Link Publikation -
2010
Titel MRE11 and COM1/SAE2 are required for double-strand break repair and efficient chromosome pairing during meiosis of the protist Tetrahymena DOI 10.1007/s00412-010-0274-9 Typ Journal Article Autor Lukaszewicz A Journal Chromosoma Seiten 505-518 -
2010
Titel Monitoring Genomic Sequences during SELEX Using High-Throughput Sequencing: Neutral SELEX DOI 10.1371/journal.pone.0009169 Typ Journal Article Autor Zimmermann B Journal PLoS ONE Link Publikation -
2010
Titel Identification of an RNase J ortholog in Sulfolobus solfataricus: Implications for 5'-to-3' directional decay and 5'-end protection of mRNA in Crenarchaeota DOI 10.1261/rna.2418211 Typ Journal Article Autor Hasenöhrl D Journal RNA Seiten 99-107 Link Publikation -
2010
Titel Systematic genetic analysis of muscle morphogenesis and function in Drosophila DOI 10.1038/nature08799 Typ Journal Article Autor Schnorrer F Journal Nature Seiten 287-291 -
2010
Titel FACT: Functional annotation transfer between proteins with similar feature architectures DOI 10.1186/1471-2105-11-417 Typ Journal Article Autor Koestler T Journal BMC Bioinformatics Seiten 417 Link Publikation -
2010
Titel Evolutionary Genomics of microRNAs and Their Relatives DOI 10.1002/9780470570418.ch15 Typ Book Chapter Autor Tanzer A Verlag Wiley Seiten 295-327 -
2010
Titel An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila DOI 10.1038/emboj.2010.212 Typ Journal Article Autor Olivieri D Journal The EMBO Journal Seiten 3301-3317 Link Publikation -
2010
Titel Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module DOI 10.1016/j.cell.2010.04.026 Typ Journal Article Autor Köhler A Journal Cell Seiten 606-617 Link Publikation -
2014
Titel Adaptable probabilistic mapping of short reads using position specific scoring matrices DOI 10.1186/1471-2105-15-100 Typ Journal Article Autor Kerpedjiev P Journal BMC Bioinformatics Seiten 100 Link Publikation -
2014
Titel Impact of Hfq on the Bacillus subtilis Transcriptome DOI 10.1371/journal.pone.0098661 Typ Journal Article Autor Hämmerle H Journal PLoS ONE Link Publikation -
2014
Titel Structural basis for the interaction of protein S1 with the Escherichia coli ribosome DOI 10.1093/nar/gku1314 Typ Journal Article Autor Byrgazov K Journal Nucleic Acids Research Seiten 661-673 Link Publikation -
2014
Titel The RNA-Editing Enzyme ADAR1 Controls Innate Immune Responses to RNA DOI 10.1016/j.celrep.2014.10.041 Typ Journal Article Autor Mannion N Journal Cell Reports Seiten 1482-1494 Link Publikation -
2014
Titel Imaging of Endogenous Messenger RNA Splice Variants in Living Cells Reveals Nuclear Retention of Transcripts Inaccessible to Nonsense-Mediated Decay in Arabidopsis DOI 10.1105/tpc.113.118075 Typ Journal Article Autor Göhring J Journal The Plant Cell Seiten 754-764 Link Publikation -
2016
Titel Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors DOI 10.1016/j.tig.2016.10.003 Typ Journal Article Autor Zabidi M Journal Trends in Genetics Seiten 801-814 Link Publikation -
2016
Titel An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile DOI 10.1089/cmb.2016.0096 Typ Journal Article Autor Prakash C Journal Journal of Computational Biology Seiten 200-212 Link Publikation -
2016
Titel Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P DOI 10.1093/nar/gkw080 Typ Journal Article Autor Brillante N Journal Nucleic Acids Research Seiten 2323-2336 Link Publikation -
2016
Titel Molecular Profiling of Thymoma and Thymic Carcinoma: Genetic Differences and Potential Novel Therapeutic Targets DOI 10.1007/s12253-016-0144-8 Typ Journal Article Autor Enkner F Journal Pathology & Oncology Research Seiten 551-564 Link Publikation -
2016
Titel AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data DOI 10.1101/051938 Typ Preprint Autor Zhang R Seiten 051938 Link Publikation -
2016
Titel Cross-regulation by CrcZ RNA controls anoxic biofilm formation in Pseudomonas aeruginosa DOI 10.1038/srep39621 Typ Journal Article Autor Pusic P Journal Scientific Reports Seiten 39621 Link Publikation -
2016
Titel Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila DOI 10.15252/embj.201695164 Typ Journal Article Autor Reimão-Pinto M Journal The EMBO Journal Seiten 2417-2434 Link Publikation -
2016
Titel Genetic and mechanistic diversity of piRNA 3'-end formation DOI 10.1038/nature20162 Typ Journal Article Autor Hayashi R Journal Nature Seiten 588-592 Link Publikation -
2016
Titel Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity DOI 10.1186/s13059-016-1083-0 Typ Journal Article Autor Tajaddod M Journal Genome Biology Seiten 220 Link Publikation -
2016
Titel RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum Medium DOI 10.1371/journal.pone.0147811 Typ Journal Article Autor Tata M Journal PLOS ONE Link Publikation -
2016
Titel A Stress-Induced Bias in the Reading of the Genetic Code in Escherichia coli DOI 10.1128/mbio.01855-16 Typ Journal Article Autor Oron-Gottesman A Journal mBio Link Publikation -
2015
Titel Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts DOI 10.1105/tpc.15.00572 Typ Journal Article Autor Brown J Journal The Plant Cell Seiten 2083-2087 Link Publikation -
2015
Titel Approaching the Golden Fleece a Molecule at a Time: Biophysical Insights into Argonaute-Instructed Nucleic Acid Interactions DOI 10.1016/j.molcel.2015.06.021 Typ Journal Article Autor Herzog V Journal Molecular Cell Seiten 4-7 Link Publikation -
2015
Titel Chapter Eight Thermodynamic and Kinetic Folding of Riboswitches DOI 10.1016/bs.mie.2014.10.060 Typ Book Chapter Autor Badelt S Verlag Elsevier Seiten 193-213 -
2015
Titel Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study DOI 10.1186/s12917-015-0378-9 Typ Journal Article Autor Krunic M Journal BMC Veterinary Research Seiten 90 Link Publikation -
2014
Titel Let there be light: Regulation of gene expression in plants DOI 10.4161/15476286.2014.972852 Typ Journal Article Autor Petrillo E Journal RNA Biology Seiten 1215-1220 Link Publikation -
2014
Titel Functions of double-stranded RNA-binding domains in nucleocytoplasmic transport DOI 10.4161/15476286.2014.972856 Typ Journal Article Autor Banerjee S Journal RNA Biology Seiten 1226-1232 Link Publikation -
2014
Titel Shedding light on the chloroplast as a remote control of nuclear gene expression DOI 10.4161/15592324.2014.976150 Typ Journal Article Autor Herz M Journal Plant Signaling & Behavior Link Publikation -
2014
Titel A Chloroplast Retrograde Signal Regulates Nuclear Alternative Splicing DOI 10.1126/science.1250322 Typ Journal Article Autor Petrillo E Journal Science Seiten 427-430 Link Publikation -
2014
Titel Suitable transfection methods for single particle tracing in plant suspension cells DOI 10.1186/1746-4811-10-15 Typ Journal Article Autor Göhring J Journal Plant Methods Seiten 15 Link Publikation -
2014
Titel Classification and evolution of type II CRISPR-Cas systems DOI 10.1093/nar/gku241 Typ Journal Article Autor Chylinski K Journal Nucleic Acids Research Seiten 6091-6105 Link Publikation -
2014
Titel Drosha protein levels are translationally regulated during Xenopus oocyte maturation DOI 10.1091/mbc.e13-07-0386 Typ Journal Article Autor Muggenhumer D Journal Molecular Biology of the Cell Seiten 2094-2104 Link Publikation -
2014
Titel Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation DOI 10.1038/nature13994 Typ Journal Article Autor Zabidi M Journal Nature Seiten 556-559 Link Publikation -
2013
Titel Spatio-temporal profiling of Filamin A RNA-editing reveals ADAR preferences and high editing levels outside neuronal tissues DOI 10.4161/rna.26216 Typ Journal Article Autor Stulic M Journal RNA Biology Seiten 1611-1617 Link Publikation -
2013
Titel Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq DOI 10.1126/science.1232542 Typ Journal Article Autor Arnold C Journal Science Seiten 1074-1077 -
2013
Titel Imprinted Igf2r silencing depends on continuous Airn lncRNA expression and is not restricted to a developmental window DOI 10.1242/dev.088849 Typ Journal Article Autor Santoro F Journal Development Seiten 1184-1195 -
2013
Titel Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems DOI 10.1093/nar/gkt1074 Typ Journal Article Autor Fonfara I Journal Nucleic Acids Research Seiten 2577-2590 Link Publikation -
2013
Titel Intron excision from precursor tRNA molecules in mammalian cells requires ATP hydrolysis and phosphorylation of tRNA-splicing endonuclease components DOI 10.1042/bst20130025 Typ Journal Article Autor Mair B Journal Biochemical Society Transactions Seiten 831-837 -
2013
Titel Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature DOI 10.4161/rna.27100 Typ Journal Article Autor Hämmerle H Journal RNA Biology Seiten 1834-1841 Link Publikation -
2013
Titel The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems DOI 10.4161/rna.24321 Typ Journal Article Autor Chylinski K Journal RNA Biology Seiten 726-737 Link Publikation -
2013
Titel Characterization of the kinetics of RNA annealing and strand displacement activities of the E. coli DEAD-box helicase CsdA DOI 10.4161/rna.23475 Typ Journal Article Autor Stampfl S Journal RNA Biology Seiten 149-156 Link Publikation -
2013
Titel A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing DOI 10.4161/rna.23208 Typ Journal Article Autor Garncarz W Journal RNA Biology Seiten 192-204 Link Publikation -
2013
Titel Bacterial helicases in post-transcriptional control DOI 10.1016/j.bbagrm.2012.12.005 Typ Journal Article Autor Kaberdin V Journal Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms Seiten 878-883 -
2012
Titel TreeSnatcher plus: capturing phylogenetic trees from images DOI 10.1186/1471-2105-13-110 Typ Journal Article Autor Laubach T Journal BMC Bioinformatics Seiten 110 Link Publikation -
2012
Titel Asymmetric Segregation of the Double-Stranded RNA Binding Protein Staufen2 during Mammalian Neural Stem Cell Divisions Promotes Lineage Progression DOI 10.1016/j.stem.2012.06.006 Typ Journal Article Autor Kusek G Journal Cell Stem Cell Seiten 505-516 Link Publikation -
2012
Titel Long-term, efficient inhibition of microRNA function in mice using rAAV vectors DOI 10.1038/nmeth.1903 Typ Journal Article Autor Xie J Journal Nature Methods Seiten 403-409 Link Publikation -
2012
Titel A numbers game underpins cytoplasmic mRNA transport DOI 10.1038/ncb2475 Typ Journal Article Autor Doyle M Journal Nature Cell Biology Seiten 333-335 -
2012
Titel The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila DOI 10.1016/j.molcel.2012.07.021 Typ Journal Article Autor Olivieri D Journal Molecular Cell Seiten 954-969 Link Publikation -
2012
Titel A Downstream CpG Island Controls Transcript Initiation and Elongation and the Methylation State of the Imprinted Airn Macro ncRNA Promoter DOI 10.1371/journal.pgen.1002540 Typ Journal Article Autor Koerner M Journal PLoS Genetics Link Publikation -
2012
Titel RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation DOI 10.1093/nar/gks1353 Typ Journal Article Autor Tariq A Journal Nucleic Acids Research Seiten 2581-2593 Link Publikation -
2012
Titel NGC: lossless and lossy compression of aligned high-throughput sequencing data DOI 10.1093/nar/gks939 Typ Journal Article Autor Popitsch N Journal Nucleic Acids Research Link Publikation -
2012
Titel Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression DOI 10.1016/j.cell.2012.10.040 Typ Journal Article Autor Sienski G Journal Cell Seiten 964-980 Link Publikation -
2012
Titel LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs DOI 10.1261/rna.029041.111 Typ Journal Article Autor Will S Journal RNA Seiten 900-914 Link Publikation -
2012
Titel Study of E. coli Hfq’s RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents DOI 10.1093/nar/gks942 Typ Journal Article Autor Doetsch M Journal Nucleic Acids Research Seiten 487-497 Link Publikation -
2012
Titel RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction DOI 10.1093/nar/gks009 Typ Journal Article Autor Washietl S Journal Nucleic Acids Research Seiten 4261-4272 Link Publikation -
2012
Titel Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis DOI 10.1101/gr.134106.111 Typ Journal Article Autor Marquez Y Journal Genome Research Seiten 1184-1195 Link Publikation -
2012
Titel RNA Folding Algorithms with G-Quadruplexes DOI 10.1007/978-3-642-31927-3_5 Typ Book Chapter Autor Lorenz R Verlag Springer Nature Seiten 49-60 -
2012
Titel Deciphering the transcriptional cis-regulatory code DOI 10.1016/j.tig.2012.09.007 Typ Journal Article Autor Yáñez-Cuna J Journal Trends in Genetics Seiten 11-22 -
2012
Titel Diversity and roles of (t)RNA ligases DOI 10.1007/s00018-012-0944-2 Typ Journal Article Autor Popow J Journal Cellular and Molecular Life Sciences Seiten 2657-2670 Link Publikation -
2012
Titel Folding RNA/DNA hybrid duplexes DOI 10.1093/bioinformatics/bts466 Typ Journal Article Autor Lorenz R Journal Bioinformatics Seiten 2530-2531 -
2012
Titel Identification of an ancient haemophilia A splice site mutation DOI 10.1016/j.thromres.2012.02.008 Typ Journal Article Autor Reitter-Pfoertner S Journal Thrombosis Research Seiten 445-450 -
2012
Titel HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature DOI 10.1101/gad.188052.112 Typ Journal Article Autor Kvon E Journal Genes & Development Seiten 908-913 Link Publikation -
2012
Titel Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding DOI 10.1101/gr.132811.111 Typ Journal Article Autor Yáñez-Cuna J Journal Genome Research Seiten 2018-2030 Link Publikation -
2012
Titel Modelling Translation Initiation under the Influence of sRNA DOI 10.3390/ijms131216223 Typ Journal Article Autor Amman F Journal International Journal of Molecular Sciences Seiten 16223-16240 Link Publikation -
2012
Titel MASon: MILLION ALIGNMENTS IN SECONDS - A Platform Independent Pairwise Sequence Alignment Library for Next Generation Sequencing Data DOI 10.5220/0003775701950201 Typ Conference Proceeding Abstract Seiten 195-201 Link Publikation -
2012
Titel Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs DOI 10.1101/gr.133025.111 Typ Journal Article Autor Vesely C Journal Genome Research Seiten 1468-1476 Link Publikation -
2012
Titel Selective translation during stress in Escherichia coli DOI 10.1016/j.tibs.2012.07.007 Typ Journal Article Autor Moll I Journal Trends in Biochemical Sciences Seiten 493-498 Link Publikation -
2012
Titel Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD–PA1779–cobA operon DOI 10.1099/mic.0.053850-0 Typ Journal Article Autor Romeo A Journal Microbiology Seiten 1543-1552 Link Publikation -
2012
Titel Direct Interaction of the N-Terminal Domain of Ribosomal Protein S1 with Protein S2 in Escherichia coli DOI 10.1371/journal.pone.0032702 Typ Journal Article Autor Byrgazov K Journal PLoS ONE Link Publikation -
2012
Titel On the group theoretical background of assigning stepwise mutations onto phylogenies DOI 10.1186/1748-7188-7-36 Typ Journal Article Autor Fischer M Journal Algorithms for Molecular Biology Seiten 36 Link Publikation -
2011
Titel The performance of phylogenetic algorithms in estimating haplotype genealogies with migration DOI 10.1111/j.1365-294x.2011.05066.x Typ Journal Article Autor Salzburger W Journal Molecular Ecology Seiten 1952-1963 -
2011
Titel Mechanisms of dendritic mRNA transport and its role in synaptic tagging DOI 10.1038/emboj.2011.278 Typ Journal Article Autor Doyle M Journal The EMBO Journal Seiten 3540-3552 Link Publikation -
2011
Titel CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III DOI 10.1038/nature09886 Typ Journal Article Autor Deltcheva E Journal Nature Seiten 602-607 Link Publikation -
2011
Titel RNA Accessibility in cubic time DOI 10.1186/1748-7188-6-3 Typ Journal Article Autor Bernhart S Journal Algorithms for Molecular Biology Seiten 3 Link Publikation -
2011
Titel Independent localization of MAP2, CaMKIIa and ß-actin RNAs in low copy numbers DOI 10.1038/embor.2011.149 Typ Journal Article Autor Mikl M Journal The EMBO Reports Seiten 1077-1084 Link Publikation -
2010
Titel Mutations in Caenorhabditis elegans him-19 Show Meiotic Defects That Worsen with Age DOI 10.1091/mbc.e09-09-0811 Typ Journal Article Autor Tang L Journal Molecular Biology of the Cell Seiten 885-896 Link Publikation -
2010
Titel Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts DOI 10.1093/nar/gkq032 Typ Journal Article Autor Lorenz C Journal Nucleic Acids Research Seiten 3794-3808 Link Publikation -
2010
Titel Mechanisms of StpA-mediated RNA remodeling DOI 10.4161/rna.7.6.13882 Typ Journal Article Autor Doetsch M Journal RNA Biology Seiten 735-743 Link Publikation -
2010
Titel Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA DOI 10.4161/rna.7.6.13768 Typ Journal Article Autor Resch A Journal RNA Biology Seiten 796-802 Link Publikation -
2010
Titel Editorial on alternative splicing and disease DOI 10.4161/rna.7.4.12818 Typ Journal Article Autor Barta A Journal RNA Biology Seiten 388-389 Link Publikation -
2010
Titel Reaching complexity through RNA-editing DOI 10.4161/rna.7.2.11620 Typ Journal Article Autor Jantsch M Journal RNA Biology Seiten 191-191 Link Publikation -
2010
Titel Proteome diversification by adenosine to inosine RNA-editing DOI 10.4161/rna.7.2.11286 Typ Journal Article Autor Pullirsch D Journal RNA Biology Seiten 205-212 Link Publikation -
2010
Titel Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis DOI 10.1105/tpc.109.072819 Typ Journal Article Autor Baubec T Journal The Plant Cell Seiten 34-47 Link Publikation -
2010
Titel Nematode sbRNAs: Homologs of Vertebrate Y RNAs DOI 10.1007/s00239-010-9332-4 Typ Journal Article Autor Boria I Journal Journal of Molecular Evolution Seiten 346-358 -
2010
Titel RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles DOI 10.1093/nar/gkq057 Typ Journal Article Autor Rederstorff M Journal Nucleic Acids Research Link Publikation -
2010
Titel SDA*: A Simple and Unifying Solution to Recent Bioinformatic Challenges for Conservation Genetics DOI 10.1109/kse.2010.24 Typ Conference Proceeding Abstract Autor Minh B Seiten 33-37 -
2010
Titel The Tetrahymena Argonaute-Binding Protein Giw1p Directs a Mature Argonaute-siRNA Complex to the Nucleus DOI 10.1016/j.cell.2010.02.010 Typ Journal Article Autor Noto T Journal Cell Seiten 692-703 Link Publikation -
2010
Titel Evolution of metabolic networks: a computational frame-work DOI 10.1186/1759-2208-1-4 Typ Journal Article Autor Flamm C Journal Journal of Systems Chemistry Seiten 4 Link Publikation -
2010
Titel Diverse Endonucleolytic Cleavage Sites in the Mammalian Transcriptome Depend upon MicroRNAs, Drosha, and Additional Nucleases DOI 10.1016/j.molcel.2010.06.001 Typ Journal Article Autor Karginov F Journal Molecular Cell Seiten 781-788 Link Publikation -
2010
Titel Bcheck: a wrapper tool for detecting RNase P RNA genes DOI 10.1186/1471-2164-11-432 Typ Journal Article Autor Yusuf D Journal BMC Genomics Seiten 432 Link Publikation -
2010
Titel AREsite: a database for the comprehensive investigation of AU-rich elements DOI 10.1093/nar/gkq990 Typ Journal Article Autor Gruber A Journal Nucleic Acids Research Link Publikation -
2010
Titel MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis DOI 10.1101/gad.1986710 Typ Journal Article Autor Nodine M Journal Genes & Development Seiten 2678-2692 Link Publikation -
2010
Titel Gene Regulation by Nucleoporins and Links to Cancer DOI 10.1016/j.molcel.2010.01.040 Typ Journal Article Autor Köhler A Journal Molecular Cell Seiten 6-15 Link Publikation -
2010
Titel The Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer DOI 10.1126/science.1180616 Typ Journal Article Autor Murchison E Journal Science Seiten 84-87 Link Publikation -
2010
Titel BarMap: RNA folding on dynamic energy landscapes DOI 10.1261/rna.2093310 Typ Journal Article Autor Hofacker I Journal RNA Seiten 1308-1316 Link Publikation -
2010
Titel A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila DOI 10.1091/mbc.e09-12-1079 Typ Journal Article Autor Cheng C Journal Molecular Biology of the Cell Seiten 1753-1762 Link Publikation -
2010
Titel Designing Optimal siRNA Based on Target Site Accessibility DOI 10.1007/978-1-60761-588-0_9 Typ Book Chapter Autor Hofacker I Verlag Springer Nature Seiten 137-154 -
2010
Titel Nol9 is a novel polynucleotide 5'-kinase involved in ribosomal RNA processing DOI 10.1038/emboj.2010.275 Typ Journal Article Autor Heindl K Journal The EMBO Journal Seiten 4161-4171 Link Publikation -
2009
Titel De novo prediction of structured RNAs from genomic sequences DOI 10.1016/j.tibtech.2009.09.006 Typ Journal Article Autor Gorodkin J Journal Trends in Biotechnology Seiten 9-19 Link Publikation -
2009
Titel Translation initiation complex formation in the crenarchaeon Sulfolobus solfataricus DOI 10.1261/rna.1662609 Typ Journal Article Autor Hasenöhrl D Journal RNA Seiten 2288-2298 Link Publikation -
2009
Titel The TLR-independent DNA recognition pathway in murine macrophages: Ligand features and molecular signature DOI 10.1002/eji.200939344 Typ Journal Article Autor Karayel E Journal European Journal of Immunology Seiten 1929-1936 Link Publikation -
2009
Titel Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary DOI 10.1016/j.cell.2009.03.040 Typ Journal Article Autor Malone C Journal Cell Seiten 522-535 Link Publikation -
2009
Titel Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding DOI 10.1093/nar/gkp1125 Typ Journal Article Autor Vecerek B Journal Nucleic Acids Research Seiten 1284-1293 Link Publikation -
2009
Titel Learning the transcriptional regulatory code DOI 10.1038/msb.2009.88 Typ Journal Article Autor Stark A Journal Molecular Systems Biology Link Publikation -
2009
Titel Loss of the Mili-interacting Tudor domain–containing protein-1 activates transposons and alters the Mili-associated small RNA profile DOI 10.1038/nsmb.1615 Typ Journal Article Autor Reuter M Journal Nature Structural & Molecular Biology Seiten 639-646 -
2009
Titel RNAsnoop: efficient target prediction for H/ACA snoRNAs DOI 10.1093/bioinformatics/btp680 Typ Journal Article Autor Tafer H Journal Bioinformatics Seiten 610-616 Link Publikation -
2009
Titel The TDRD9-MIWI2 Complex Is Essential for piRNA-Mediated Retrotransposon Silencing in the Mouse Male Germline DOI 10.1016/j.devcel.2009.10.012 Typ Journal Article Autor Shoji M Journal Developmental Cell Seiten 775-787 Link Publikation -
2009
Titel miR-29a suppresses tristetraprolin, which is a regulator of epithelial polarity and metastasis DOI 10.1038/embor.2009.9 Typ Journal Article Autor Gebeshuber C Journal The EMBO Reports Seiten 400-405 Link Publikation -
2009
Titel HaMStR: Profile hidden markov model based search for orthologs in ESTs DOI 10.1186/1471-2148-9-157 Typ Journal Article Autor Ebersberger I Journal BMC Evolutionary Biology Seiten 157 Link Publikation -
2009
Titel Ars2 and the Cap-Binding Complex Team up for Silencing DOI 10.1016/j.cell.2009.07.009 Typ Journal Article Autor Nielsen A Journal Cell Seiten 224-226 Link Publikation -
2009
Titel Nucleic Acid Sequence and Structure Databases DOI 10.1007/978-1-60327-241-4_1 Typ Book Chapter Autor Washietl S Verlag Springer Nature Seiten 3-15 -
2009
Titel RNA-Regulated Interaction of Transportin-1 and Exportin-5 with the Double-Stranded RNA-Binding Domain Regulates Nucleocytoplasmic Shuttling of ADAR1 DOI 10.1128/mcb.01519-08 Typ Journal Article Autor Fritz J Journal Molecular and Cellular Biology Seiten 1487-1497 Link Publikation -
2009
Titel Mutational Uncoupling of the Role of Sus1 in Nuclear Pore Complex Targeting of an mRNA Export Complex and Histone H2B Deubiquitination DOI 10.1074/jbc.m900502200 Typ Journal Article Autor Klöckner C Journal Journal of Biological Chemistry Seiten 12049-12056 Link Publikation -
2009
Titel The impact of non-coding RNAs DOI 10.1038/embor.2009.100 Typ Journal Article Autor Boots J Journal The EMBO Reports Seiten 563-567 Link Publikation -
2008
Titel Folding Kinetics of Large RNAs DOI 10.1016/j.jmb.2008.02.064 Typ Journal Article Autor Geis M Journal Journal of Molecular Biology Seiten 160-173 Link Publikation -
2008
Titel Strategies for measuring evolutionary conservation of RNA secondary structures DOI 10.1186/1471-2105-9-122 Typ Journal Article Autor Gruber A Journal BMC Bioinformatics Seiten 122 Link Publikation -
2008
Titel Invertebrate 7SK snRNAs DOI 10.1007/s00239-007-9052-6 Typ Journal Article Autor Gruber A Journal Journal of Molecular Evolution Seiten 107-115 Link Publikation -
2008
Titel El Sur también existe: processing RNA in the Argentine Patagonia DOI 10.1038/embor.2008.97 Typ Journal Article Autor Martinez J Journal The EMBO Reports Seiten 516-520 Link Publikation -
2008
Titel Isolation of small RNA-binding proteins from E. coli: Evidence for frequent interaction of RNAs with RNA polymerase DOI 10.4161/rna.5.1.5694 Typ Journal Article Autor Windbichler N Journal RNA Biology Seiten 30-40 Link Publikation -
2008
Titel The impact of single substitutions on multiple sequence alignments DOI 10.1098/rstb.2008.0140 Typ Journal Article Autor Klaere S Journal Philosophical Transactions of the Royal Society B: Biological Sciences Seiten 4041-4047 Link Publikation -
2008
Titel A loss of function allele for murine Staufen1 leads to impairment of dendritic Staufen1-RNP delivery and dendritic spine morphogenesis DOI 10.1073/pnas.0804583105 Typ Journal Article Autor Vessey J Journal Proceedings of the National Academy of Sciences Seiten 16374-16379 Link Publikation -
2008
Titel Model-based probe set optimization for high-performance microarrays DOI 10.1093/nar/gkn1001 Typ Journal Article Autor Leparc G Journal Nucleic Acids Research Link Publikation -
2008
Titel An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees DOI 10.1089/cmb.2008.0068 Typ Journal Article Autor Kupczok A Journal Journal of computational biology : a journal of computational molecular cell biology Seiten 577-591 Link Publikation -
2008
Titel Rooted triple consensus and anomalous gene trees DOI 10.1186/1471-2148-8-118 Typ Journal Article Autor Ewing G Journal BMC Evolutionary Biology Seiten 118 Link Publikation -
2008
Titel Role of Cajal Bodies and Nucleolus in the Maturation of the U1 snRNP in Arabidopsis DOI 10.1371/journal.pone.0003989 Typ Journal Article Autor Lorkovic Z Journal PLoS ONE Link Publikation -
2008
Titel RNAalifold: improved consensus structure prediction for RNA alignments DOI 10.1186/1471-2105-9-474 Typ Journal Article Autor Bernhart S Journal BMC Bioinformatics Seiten 474 Link Publikation -
2008
Titel Translation initiation factor a/eIF2(-?) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus DOI 10.1073/pnas.0708894105 Typ Journal Article Autor Hasenöhrl D Journal Proceedings of the National Academy of Sciences Seiten 2146-2150 Link Publikation -
2008
Titel Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics DOI 10.1007/978-3-540-70600-7_9 Typ Book Chapter Autor Mückstein U Verlag Springer Nature Seiten 114-127 -
2008
Titel Janus chaperones: Assistance of both RNA- and protein-folding by ribosomal proteins DOI 10.1016/j.febslet.2008.11.049 Typ Journal Article Autor Kovacs D Journal FEBS Letters Seiten 88-92 Link Publikation -
2008
Titel Pegylated granulocyte colony-stimulating factor mobilizes CD34+ cells with different stem and progenitor subsets and distinct functional properties in comparison with unconjugated granulocyte colony-stimulating factor DOI 10.3324/haematol.12081 Typ Journal Article Autor Bruns I Journal Haematologica Seiten 347-355 Link Publikation -
2007
Titel Variations on RNA folding and alignment: lessons from Benasque DOI 10.1007/s00285-007-0107-5 Typ Journal Article Autor Bompfünewerer A Journal Journal of Mathematical Biology Seiten 129-144 -
2007
Titel Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts DOI 10.1111/j.1365-313x.2007.03392.x Typ Journal Article Autor Simpson C Journal The Plant Journal Seiten 1035-1048 -
2007
Titel Screening for engineered neomycin riboswitches that control translation initiation DOI 10.1261/rna.772408 Typ Journal Article Autor Weigand J Journal RNA Seiten 89-97 Link Publikation -
2007
Titel SnoReport: computational identification of snoRNAs with unknown targets DOI 10.1093/bioinformatics/btm464 Typ Journal Article Autor Hertel J Journal Bioinformatics Seiten 158-164 Link Publikation -
2007
Titel Two receptor-like kinases required together for the establishment of Arabidopsis cotyledon primordia DOI 10.1016/j.ydbio.2007.11.021 Typ Journal Article Autor Nodine M Journal Developmental Biology Seiten 161-170 Link Publikation -
2007
Titel Computational Molecular Evolution—Ziheng Yang. 2006. Oxford University Press, Oxford. 376 pp. ISBN 978-0-19-856699-1 (ISBN-10 0-19-856699-9) £60 $115 (hardback). ISBN 978-0-19-856702-8 (ISBN-10 0-19-856702-2) £27.50 $52.50 (paperback). DOI 10.1080/10635150701752532 Typ Journal Article Autor Vinh L Journal Systematic Biology Seiten 1024-1026 Link Publikation -
2007
Titel The C-terminal domain of Escherichia coli Hfq is required for regulation DOI 10.1093/nar/gkm985 Typ Journal Article Autor Vecerek B Journal Nucleic Acids Research Seiten 133-143 Link Publikation