Structure and Interaction of Biological Macromolecules
Structure and Interaction of Biological Macromolecules
Disciplines
Biology (100%)
Keywords
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Macromolecular structure and dynamics,
Macromolecular complexes,
Structure-function analysis,
Molecular conformation,
Inter-molecular recognition,
Protein engineering
The aim of this DK-plus is to provide selected students with an in-depth, interdisciplinary training in scientific method to enable them to comprehend, rigorously analyse and provide solutions to biological problems. To achieve this aim, we have chosen the theme "Structure and Interactions of Biological Macromolecules". This theme contains questions at the heart of modern molecular and cellular biology which can be investigated by a range of powerful and varied techniques. Students will master several of the most modern techniques and to gain experience in choosing the appropriate approaches to solve biological problems in structural terms. The theoretical and practical training will emphasise the interactions of biological macromolecules for determining their function and the prerequisites necessary for interactions and subsequent outcomes. The participating faculty comprises twelve scientists with excellent publication and funding records in analysing the structures and interactions of biological macromolecules. Together, the faculty employ most of the current techniques available. Eight faculty members have substantial experience in supervising graduate students. The remaining four faculty are younger scientists in the early part of their careers who themselves will be guided in mentoring by the more experienced faculty. The added value of this DK-plus lies in the common theme, the supervision and the participating faculty. The students will be exposed to very different techniques and scientific approaches to examine the structures and interactions of biological macromolecules. The projects offered range from the folding of macromolecules through the importance of interactions for determining function in macromolecular complexes to the consequences of protein-protein interactions in pathogenic infectious agents. The students will have a co-supervisor from the program faculty and will be guided by a PhD committee. Lab talks, journal clubs and rotation will expose the students to different ways of thinking and environments and will permit them to master a significantly broader range of techniques than would ever be possible in a PhD outside the program. The scientific development of the students will be promoted by the inter-disciplinary approach of the faculty and the scientific environment of the Vienna Biocenter Campus. Specific lecture and seminar courses, visits to collaborating laboratories, the organisation of an international workshop and participation at international meetings will further extend their scientific development. Courses in accompanying skills such as paper and grant writing, presentation techniques, ethics, project management, gender issues and career planning will round off the students` education. The DK-plus "Structure and interactions of biological macromolecules" is geared to producing alumni disciplined in the use of the scientific method, able to analyse scientific problems with intellectual rigour and having the analytic awareness to make unexpected discoveries in the future.
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consortium member (01.03.2009 - 31.08.2014)
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consortium member (01.03.2009 - 31.08.2014)
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consortium member (01.03.2009 - 31.08.2014)
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consortium member (01.03.2009 - 31.08.2014)
- Medizinische Universität Wien
- Institut für Molekulare Pathologie - IMP
- Universität Wien
- IMBA – Institut für Molekulare Biotechnologie GmbH
- Thomas Marlovits, IMBA – Institut für Molekulare Biotechnologie GmbH , associated research partner
- Robert Konrat, Universität Wien , associated research partner
- Jan-Michael Peters, Institut für Molekulare Pathologie - IMP , associated research partner
- Luiz Juliano, Universidade de Sao Paulo - Brazil
- Lewis E. Kay, University of Toronto - Canada
- Anita Krisko, Mediterranean Institute for Life Sciences - Croatia
- Martin Gregor, Academy of Sciences of the Czech Republic - Czechia
- Bernhard Brutscher, UMR 5075 CNRS-CEA-UJF - France
- Bernd Bukau, Ruprecht-Karls-Universität Heidelberg - Germany
- Bettina Warscheid, Universität Freiburg - Germany
- Michael Ehrmann, Universität Duisburg-Essen - Germany
- Dieter O. Fürst, Universität Bonn - Germany
- Gerhard Hummer, Max-Planck-Institut für Biophysik - Germany
- Holger Stark, Technische Universität Berlin - Germany
- Emmanuelle Charpentier, Max-Planck-Gesellschaft - Germany
- Anthony A. Hyman, Max-Planck-Gesellschaft - Germany
- Dariush Hinderberger, Max Planck-Institut f. Polymerforschung - Germany
- Ivo Sbalzarini, Max Planck Institut Dresden - Germany
- Matthias Wilmanns, European Molecular Biology Laboratory Hamburg - Germany
- Brenda A. Schulman, Max-Planck-Institut - Germany
- Navraj Pannu, Universiteit Leiden - Netherlands
- Bartosz Rozycki, Polish Academy of Sciences - Poland
- Yuri Drygin, Lomonosov Moscow State University - Russia
- Xavier Daura, University of Barcelona - Spain
- Miquel Pons, Institute for Research in Biomedicine - Spain
- Nuria Verdaguer, Spanish National Research Council - Spain
- Jose Caston, Centro Nacional de BiotecnologÃa - Spain
- Luis Carrasco, Centro Nacional de BiotecnologÃa - Spain
- Philippe Hünenberger, ETH Hönggerberg - Switzerland
- Wilfred F. Van Gunsteren, ETH Zürich - Switzerland
- Farrah Kheradmand, Baylor College of Medicine - USA
- Adrian Elcock, The University of Iowa - USA
- Kurt Gustin, University of Arizona - USA
- Karla Kirkegaard, University of Stanford - USA
- Vijay Pande, University of Stanford - USA
- Edward H. Egelman, Virginia State University - USA
- Jorge E. Galan, Yale University - USA
- John Vakonakis, University of Oxford
- Mathias Gautel, King´s College London
Research Output
- 1372 Citations
- 38 Publications
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2021
Title PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC DOI 10.1038/s41467-021-26360-2 Type Journal Article Author Appel L Journal Nature Communications Pages 6078 Link Publication -
2021
Title Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with a-actinin DOI 10.1126/sciadv.abg7653 Type Journal Article Author Sponga A Journal Science Advances Link Publication -
2020
Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin DOI 10.1101/2020.09.25.310029 Type Preprint Author Kostan J Pages 2020.09.25.310029 Link Publication -
2020
Title In-depth interrogation of protein thermal unfolding data with MoltenProt DOI 10.1002/pro.3986 Type Journal Article Author Kotov V Journal Protein Science Pages 201-217 Link Publication -
2019
Title Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats DOI 10.1101/826180 Type Preprint Author Sajko S Pages 826180 Link Publication -
2019
Title HspB1 phosphorylation regulates its intramolecular dynamics and mechanosensitive molecular chaperone interaction with filamin C DOI 10.1126/sciadv.aav8421 Type Journal Article Author Collier M Journal Science Advances Link Publication -
2018
Title Phosphorylation of HspB1 regulates its mechanosensitive molecular chaperone interaction with native filamin C DOI 10.1101/325712 Type Preprint Author Collier M Pages 325712 Link Publication -
2021
Title FLNC-Associated Myofibrillar Myopathy DOI 10.1212/nxg.0000000000000590 Type Journal Article Author Kley R Journal Neurology: Genetics Link Publication -
2021
Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin DOI 10.1371/journal.pbio.3001148 Type Journal Article Author Kostan J Journal PLOS Biology Link Publication -
2020
Title X-ray–induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner DOI 10.1074/jbc.ra120.014087 Type Journal Article Author Pfanzagl V Journal Journal of Biological Chemistry Pages 13488-13501 Link Publication -
2020
Title Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats DOI 10.1371/journal.pone.0242677 Type Journal Article Author Sajko S Journal PLOS ONE Link Publication -
2023
Title Unlocking Predictive Power: A Machine Learning Tool Derived from In-Depth Analysis to Forecast the Impact of Missense Variants in Human Filamin C DOI 10.1101/2023.08.05.552086 Type Preprint Author Nagy M Pages 2023.08.05.552086 Link Publication -
2020
Title PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC DOI 10.1101/2020.02.11.943159 Type Preprint Author Appel L Pages 2020.02.11.943159 Link Publication -
2020
Title Vaccinia Virus Immunomodulator A46: Destructive Interactions with MAL and MyD88 Shown by Negative-Stain Electron Microscopy DOI 10.1016/j.str.2020.09.007 Type Journal Article Author Azar D Journal Structure Link Publication -
2020
Title Calcium modulates the domain flexibility and function of an a-actinin similar to the ancestral a-actinin DOI 10.1073/pnas.1917269117 Type Journal Article Author Pinotsis N Journal Proceedings of the National Academy of Sciences Pages 22101-22112 Link Publication -
2022
Title A Potential Citrate Shunt in Erythrocytes of PKAN Patients Caused by Mutations in Pantothenate Kinase 2 DOI 10.3390/biom12020325 Type Journal Article Author Werning M Journal Biomolecules Pages 325 Link Publication -
2015
Title Structural Insights into Ca2+-Calmodulin Regulation of Plectin 1a-Integrin ß4 Interaction in Hemidesmosomes DOI 10.1016/j.str.2015.01.011 Type Journal Article Author Song J Journal Structure Pages 558-570 Link Publication -
2017
Title Hydrophobic Collapse of the Intrinsically Disordered Transcription Factor Myc Associated Factor X DOI 10.1021/acs.biochem.7b00679 Type Journal Article Author Kizilsavas G Journal Biochemistry Pages 5365-5372 Link Publication -
2016
Title Vaccinia Virus Immunomodulator A46: A Lipid and Protein-Binding Scaffold for Sequestering Host TIR-Domain Proteins DOI 10.1371/journal.ppat.1006079 Type Journal Article Author Fedosyuk S Journal PLOS Pathogens Link Publication -
2017
Title Conformational plasticity and evolutionary analysis of the myotilin tandem Ig domains DOI 10.1038/s41598-017-03323-6 Type Journal Article Author Puž V Journal Scientific Reports Pages 3993 Link Publication -
2016
Title Topology and structure of an engineered human cohesin complex bound to Pds5B DOI 10.1038/ncomms12523 Type Journal Article Author Hons M Journal Nature Communications Pages 12523 Link Publication -
2015
Title 1H, 15N, 13C resonance assignment of human osteopontin DOI 10.1007/s12104-014-9594-7 Type Journal Article Author Platzer G Journal Biomolecular NMR Assignments Pages 289-292 Link Publication -
2015
Title Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels DOI 10.1038/srep08769 Type Journal Article Author Bezerra G Journal Scientific Reports Pages 8769 Link Publication -
2011
Title Mutations in the N-terminal Actin-Binding Domain of Filamin C Cause a Distal Myopathy DOI 10.1016/j.ajhg.2011.04.021 Type Journal Article Author Duff R Journal The American Journal of Human Genetics Pages 729-740 Link Publication -
2011
Title Lipocalin Q83 Reveals a Dual Ligand Binding Mode with Potential Implications for the Functions of Siderocalins DOI 10.1021/bi201115q Type Journal Article Author Coudevylle N Journal Biochemistry Pages 9192-9199 -
2011
Title The Metastasis-Associated Extracellular Matrix Protein Osteopontin Forms Transient Structure in Ligand Interaction Sites DOI 10.1021/bi200291e Type Journal Article Author Platzer G Journal Biochemistry Pages 6113-6124 -
2011
Title Random Mutagenesis of the Prokaryotic Peptide Transporter YdgR Identifies Potential Periplasmic Gating Residues* DOI 10.1074/jbc.m111.239657 Type Journal Article Author Malle E Journal Journal of Biological Chemistry Pages 23121-23131 Link Publication -
2013
Title Cooperative Unfolding of Compact Conformations of the Intrinsically Disordered Protein Osteopontin DOI 10.1021/bi400502c Type Journal Article Author Kurzbach D Journal Biochemistry Pages 5167-5175 Link Publication -
2013
Title Electron microscopy structure of human APC/CCDH1–EMI1 reveals multimodal mechanism of E3 ligase shutdown DOI 10.1038/nsmb.2593 Type Journal Article Author Frye J Journal Nature Structural & Molecular Biology Pages 827-835 Link Publication -
2010
Title The v-myc-induced Q83 Lipocalin Is a Siderocalin* DOI 10.1074/jbc.m110.123331 Type Journal Article Author Coudevylle N Journal Journal of Biological Chemistry Pages 41646-41652 Link Publication -
2010
Title Substrate binding on the APC/C occurs between the coactivator Cdh1 and the processivity factor Doc1 DOI 10.1038/nsmb.1979 Type Journal Article Author Buschhorn B Journal Nature Structural & Molecular Biology Pages 6-13 Link Publication -
2014
Title Characterization of a DNA exit gate in the human cohesin ring DOI 10.1126/science.1256904 Type Journal Article Author Huis In 'T Veld P Journal Science Pages 968-972 -
2013
Title CtpB Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling during Spore Formation in Bacillus subtilis DOI 10.1016/j.cell.2013.09.050 Type Journal Article Author Mastny M Journal Cell Pages 647-658 Link Publication -
2013
Title Characterization and Structure of the Vaccinia Virus NF-?B Antagonist A46 * DOI 10.1074/jbc.m113.512756 Type Journal Article Author Fedosyuk S Journal Journal of Biological Chemistry Pages 3749-3762 Link Publication -
2013
Title Strategies for purifying variants of human rhinovirus 14 2C protein DOI 10.1016/j.pep.2013.11.012 Type Journal Article Author Sára T Journal Protein Expression and Purification Pages 28-37 -
2012
Title APC15 mediates CDC20 autoubiquitylation by APC/CMCC and disassembly of the mitotic checkpoint complex DOI 10.1038/nsmb.2412 Type Journal Article Author Uzunova K Journal Nature Structural & Molecular Biology Pages 1116-1123 Link Publication -
2012
Title 1H, 13C, and 15N backbone and side chain resonance assignments of the C-terminal DNA binding and dimerization domain of v-Myc DOI 10.1007/s12104-012-9437-3 Type Journal Article Author Kizilsavas G Journal Biomolecular NMR Assignments Pages 321-324 Link Publication -
2011
Title Siderocalin Q83 exhibits differential slow dynamics upon ligand binding DOI 10.1007/s10858-011-9543-z Type Journal Article Author Coudevylle N Journal Journal of Biomolecular NMR Pages 83