Nano-Analytics of Cellular Systems (NanoCell)
Nano-Analytics of Cellular Systems (NanoCell)
Disciplines
Biology (90%); Computer Sciences (10%)
Keywords
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Nano-Analytical Methods,
Cellular Biology,
Nanoscopic Techniques,
Membranes,
Biophysics,
Receptor/Ligands
The scientific goal of this graduate program is to gain insight into the dynamics and the molecular picture of how cellular molecules are recognized on the membrane surface, of how they are organized into molecular assemblies, and about how cellular processes such as membrane transport and motility are initiated and performed. Functional and structural investigations are carried out on both model and native systems, starting with single proteins in an artificial (reconstituted) environment and ending with sub-cellular and cellular samples. The major aim is to span the gap between the processes of molecular recognition and structural rearrangements on one side, and membrane transport and cell motility on the other side. As it focuses on frontier research in life and cellular nano-science, the program will be applicable to many scientific and technological fields related to biophysics, cell biology, nanotechnology, applied physics, theoretical physics, bioorganic and inorganic chemistry, structural and molecular biology, mathematical modelling, and scientific computing, giving the Ph.D. students lifelong flexibility for continued professional growth. Well established nano-analytical and nano-scopic techniques with a resolution ranging from sub-nanometer to micrometer cover the entire scale, from single molecules to molecular assemblies and living cells. Novel cellular biology and data analysis approaches complement it and provide a solid basis for the education and the training of the students within the NanoCell program. These methodologies will consequently be exploited and connected to each other. This highly interdisciplinary graduate research program involves faculty from six Institutes at Johannes Kepler University Linz (JKU) and three additional research centers. These include: The Institutes of Biophysics, Applied Physics, Organic Chemistry, Inorganic Chemistry, Polymer Science, and Theoretical Physics from Johannes Kepler University Linz (JKU), the Institute of Science and Technology (IST), the Institute of Applied Physics from the Vienna University of Technology (TUW), and the Research Group "Computational Mathematics for Direct Field Problems" at the Johann Radon Institute for Computational and Applied Mathematics (RICAM) from the Austrian Academy of Sciences.
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
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consortium member (01.03.2014 - 31.08.2023)
- Institute of Science and Technology Austria - ISTA
- Universität Linz
- Universität Linz
- Österreichische Akademie der Wissenschaften
- Technische Universität Wien
- Gerhard J. Schütz, Technische Universität Wien , associated research partner
- Michael Sixt, Institute of Science and Technology Austria - ISTA , associated research partner
Research Output
- 1569 Citations
- 81 Publications
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2020
Title Interhelical interactions within the STIM1 CC1 domain modulate CRAC channel activation DOI 10.1038/s41589-020-00672-8 Type Journal Article Author Rathner P Journal Nature Chemical Biology Pages 196-204 Link Publication -
2021
Title A Multimodal Platform for Simultaneous T-cell Imaging, Defined Activation, and Mechanobiological Characterization DOI 10.3390/cells10020235 Type Journal Article Author Fölser M Journal Cells Pages 235 Link Publication -
2021
Title Discovery of an unusual high number of de novo mutations in sperm of older men using duplex sequencing DOI 10.1101/2021.04.26.441422 Type Preprint Author Salazar R Pages 2021.04.26.441422 Link Publication -
2020
Title CRAC channel opening is determined by a series of Orai1 gating checkpoints in the transmembrane and cytosolic regions DOI 10.1074/jbc.ra120.015548 Type Journal Article Author Tiffner A Journal Journal of Biological Chemistry Pages 100224 Link Publication -
2019
Title Towards artificial cells for biomedical applications DOI 10.15761/brcp.1000189 Type Journal Article Author Wiesauer M Journal Biomedical Research and Clinical Practice Link Publication -
2019
Title Critical parameters maintaining authentic CRAC channel hallmarks DOI 10.1007/s00249-019-01355-6 Type Journal Article Author Krizova A Journal European Biophysics Journal Pages 425-445 Link Publication -
2019
Title Nuclear positioning facilitates amoeboid migration along the path of least resistance DOI 10.1038/s41586-019-1087-5 Type Journal Article Author Renkawitz J Journal Nature Pages 546-550 Link Publication -
2019
Title AFM-Based Force Spectroscopy Guided by Recognition Imaging: A New Mode for Mapping and Studying Interaction Sites at Low Lateral Density DOI 10.3390/mps2010006 Type Journal Article Author Koehler M Journal Methods and Protocols Pages 6 Link Publication -
2019
Title A novel STIM1-Orai1 gating interface essential for CRAC channel activation DOI 10.1016/j.ceca.2019.02.009 Type Journal Article Author Butorac C Journal Cell Calcium Pages 57-67 Link Publication -
2019
Title Wolves and dogs recruit human partners in the cooperative string-pulling task DOI 10.1038/s41598-019-53632-1 Type Journal Article Author Range F Journal Scientific Reports Pages 17591 Link Publication -
2021
Title ARGOS: An adaptive refinement goal-oriented solver for the linearized Poisson–Boltzmann equation DOI 10.1002/jcc.26716 Type Journal Article Author Nakov S Journal Journal of Computational Chemistry Pages 1832-1860 Link Publication -
2021
Title Efficient integration of transmembrane domains depends on the folding properties of the upstream sequences DOI 10.1073/pnas.2102675118 Type Journal Article Author Janoschke M Journal Proceedings of the National Academy of Sciences Link Publication -
2021
Title The energetic barrier to single-file water flow through narrow channels DOI 10.1007/s12551-021-00875-w Type Journal Article Author Pfeffermann J Journal Biophysical Reviews Pages 913-923 Link Publication -
2022
Title Discovery of novel gating checkpoints in the Orai1 calcium channel by systematic analysis of constitutively active mutants of its paralogs and orthologs DOI 10.1016/j.ceca.2022.102616 Type Journal Article Author Augustynek B Journal Cell Calcium Pages 102616 Link Publication -
2022
Title Science CommuniCa2+tion Developing Scientific Literacy on Calcium: The Involvement of CRAC Currents in Human Health and Disease DOI 10.3390/cells11111849 Type Journal Article Author Humer C Journal Cells Pages 1849 Link Publication -
2022
Title Weak formulations of the nonlinear Poisson-Boltzmann equation in biomolecular electrostatics DOI 10.1016/j.jmaa.2022.126065 Type Journal Article Author Iglesias J Journal Journal of Mathematical Analysis and Applications Pages 126065 Link Publication -
2022
Title Photodynamic activity rather than drilling causes membrane damage by a light-powered molecular nanomotor DOI 10.1016/j.jphotobiol.2022.112633 Type Journal Article Author Firsov A Journal Journal of Photochemistry and Photobiology B: Biology Pages 112633 Link Publication -
2020
Title Microtubules keep large cells in shape DOI 10.1083/jcb.202004031 Type Journal Article Author Meiring J Journal Journal of Cell Biology Link Publication -
2020
Title Microtubules control cellular shape and coherence in amoeboid migrating cells DOI 10.1083/jcb.201907154 Type Journal Article Author Kopf A Journal Journal of Cell Biology Link Publication -
2019
Title Reliable Numerical Solution of a Class of Nonlinear Elliptic Problems Generated by the Poisson–Boltzmann Equation DOI 10.1515/cmam-2018-0252 Type Journal Article Author Kraus J Journal Computational Methods in Applied Mathematics Pages 293-319 Link Publication -
2018
Title Contribution of Adhesion to Early T Cell Signaling DOI 10.1016/j.bpj.2017.11.627 Type Journal Article Author Fölser M Journal Biophysical Journal Link Publication -
2018
Title Biofunctionalization of Sub-Diffractionally Patterned Polymer Structures by Photobleaching DOI 10.1021/acsami.8b11777 Type Journal Article Author Murtezi E Journal ACS Applied Materials & Interfaces Pages 31850-31854 Link Publication -
2016
Title The concept of photochemical enzyme models – State of the art DOI 10.1016/j.ccr.2016.06.006 Type Journal Article Author Knör G Journal Coordination Chemistry Reviews Pages 102-115 -
2016
Title Impact of STIM1 R304W Mutant on Intra- and Intermolecular Cytosolic Coiled-Coil Interactions DOI 10.1016/j.bpj.2015.11.1448 Type Journal Article Author Fahrner M Journal Biophysical Journal Link Publication -
2016
Title Three-Dimensional Photonic Structures on Transparent Substrates Fabricated by Two-Photon Polymerization for Use as Cell Substrates and for Wetting Experiments DOI 10.1109/icton.2016.7550521 Type Conference Proceeding Abstract Author Heitz J Pages 1-4 -
2018
Title A dual mechanism promotes switching of the Stormorken STIM1 R304W mutant into the activated state DOI 10.1038/s41467-018-03062-w Type Journal Article Author Fahrner M Journal Nature Communications Pages 825 Link Publication -
2018
Title Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells DOI 10.1038/s41590-018-0109-z Type Journal Article Author Hons M Journal Nature Immunology Pages 606-616 -
2018
Title Rapid NMR-scale purification of 15N,13C isotope-labeled recombinant human STIM1 coiled coil fragments DOI 10.1016/j.pep.2018.01.013 Type Journal Article Author Rathner P Journal Protein Expression and Purification Pages 45-50 Link Publication -
2018
Title Driving Forces of Translocation Through Bacterial Translocon SecYEG DOI 10.1007/s00232-017-0012-9 Type Journal Article Author Knyazev D Journal The Journal of Membrane Biology Pages 329-343 Link Publication -
2017
Title Origin of proton affinity to membrane/water interfaces DOI 10.1038/s41598-017-04675-9 Type Journal Article Author Weichselbaum E Journal Scientific Reports Pages 4553 Link Publication -
2017
Title Communication between N terminus and loop2 tunes Orai activation DOI 10.1074/jbc.m117.812693 Type Journal Article Author Fahrner M Journal Journal of Biological Chemistry Pages 1271-1285 Link Publication -
2017
Title Authentic CRAC channel activity requires STIM1 and the conserved portion of the Orai N terminus DOI 10.1074/jbc.m117.812206 Type Journal Article Author Derler I Journal Journal of Biological Chemistry Pages 1259-1270 Link Publication -
2017
Title Stable Europium(III) Complexes with Short Linkers for Site-Specific Labeling of Biomolecules DOI 10.1002/open.201700122 Type Journal Article Author Faschinger F Journal ChemistryOpen Pages 721-732 Link Publication -
2021
Title Commentary to Baraniak et al. “Orai channel C-terminal peptides are key modulators of STIM-Orai coupling and calcium signal generation” published in cell reports 35: 109322. DOI 10.1016/j.ceca.2021.102455 Type Journal Article Author Fahrner M Journal Cell Calcium Pages 102455 -
2021
Title Resonance assignment of coiled-coil 3 (CC3) domain of human STIM1 DOI 10.1007/s12104-021-10042-7 Type Journal Article Author Gupta A Journal Biomolecular NMR Assignments Pages 433-439 Link Publication -
2021
Title Defects in the STIM1 SOARa2 domain affect multiple steps in the CRAC channel activation cascade DOI 10.1007/s00018-021-03933-4 Type Journal Article Author Höglinger C Journal Cellular and Molecular Life Sciences Pages 6645-6667 Link Publication -
2021
Title Deciphering Molecular Mechanisms and Intervening in Physiological and Pathophysiological Processes of Ca2+ Signaling Mechanisms Using Optogenetic Tools DOI 10.3390/cells10123340 Type Journal Article Author Maltan L Journal Cells Pages 3340 Link Publication -
2021
Title Orai1 Boosts SK3 Channel Activation DOI 10.3390/cancers13246357 Type Journal Article Author Tiffner A Journal Cancers Pages 6357 Link Publication -
2020
Title Mechanism of STIM activation DOI 10.1016/j.cophys.2020.07.006 Type Journal Article Author Fahrner M Journal Current Opinion in Physiology Pages 74-79 Link Publication -
2020
Title Interaction of the motor protein SecA and the bacterial protein translocation channel SecYEG in the absence of ATP DOI 10.1039/d0na00427h Type Journal Article Author Winkler K Journal Nanoscale Advances Pages 3431-3443 Link Publication -
2020
Title Statistical analysis of 3D localisation microscopy images for quantification of membrane protein distributions in a platelet clot model DOI 10.1371/journal.pcbi.1007902 Type Journal Article Author Mayr S Journal PLOS Computational Biology Link Publication -
2019
Title Chapter One Competitive binding assay for biotin and biotin derivatives, based on avidin and biotin-4-fluorescein DOI 10.1016/bs.mie.2019.10.028 Type Book Chapter Author Oberbichler E Publisher Elsevier Pages 1-20 -
2019
Title Bio-inspired microneedle design for efficient drug/vaccine coating DOI 10.1007/s10544-019-0456-z Type Journal Article Author Plamadeala C Journal Biomedical Microdevices Pages 8 Link Publication -
2019
Title Gut Homeostasis: Active Migration of Intestinal Epithelial Cells in Tissue Renewal DOI 10.1016/j.cub.2019.08.068 Type Journal Article Author Kopf A Journal Current Biology Link Publication -
2019
Title The Neural Crest Pitches In to Remove Apoptotic Debris DOI 10.1016/j.cell.2019.08.047 Type Journal Article Author Kopf A Journal Cell Pages 51-53 Link Publication -
2019
Title How [FeFe]-Hydrogenase Facilitates Bidirectional Proton Transfer DOI 10.1021/jacs.9b09225 Type Journal Article Author Senger M Journal Journal of the American Chemical Society Pages 17394-17403 Link Publication -
2020
Title STIM Proteins: An Ever-Expanding Family DOI 10.3390/ijms22010378 Type Journal Article Author Grabmayr H Journal International Journal of Molecular Sciences Pages 378 Link Publication -
2020
Title Multielectron Redox Catalysis with Efficient Tyrosinase Activity Based on a Visible-Light Controlled Artificial Photoenzyme DOI 10.1002/ejoc.202000357 Type Journal Article Author Reichl E Journal European Journal of Organic Chemistry Pages 3077-3080 -
2020
Title Localization STED (LocSTED) microscopy with 15 nm resolution DOI 10.1515/nanoph-2019-0398 Type Journal Article Author Puthukodan S Journal Nanophotonics Pages 783-792 Link Publication -
2020
Title Equilibrium Sampling between Membrane Interior and the Aqueous SecYEG Channel Departs from the Biological Hydrophobicity Scale DOI 10.1016/j.bpj.2019.11.2105 Type Journal Article Author Knyazev D Journal Biophysical Journal Link Publication -
2020
Title Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion DOI 10.1101/2020.11.20.391284 Type Preprint Author Slováková J Pages 2020.11.20.391284 -
2020
Title Reliable Computer Simulation Methods for Electrostatic Biomolecular Models Based on the Poisson–Boltzmann Equation DOI 10.1515/cmam-2020-0022 Type Journal Article Author Kraus J Journal Computational Methods in Applied Mathematics Pages 643-676 Link Publication -
2020
Title Cytoplasm’s Got Moves DOI 10.1016/j.devcel.2020.12.002 Type Journal Article Author Shamipour S Journal Developmental Cell Pages 213-226 Link Publication -
2020
Title In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1 DOI 10.1073/pnas.2010054118 Type Journal Article Author Duellberg C Journal Proceedings of the National Academy of Sciences Link Publication -
2020
Title A series of Orai1 gating checkpoints in transmembrane and cytosolic regions requires clearance for CRAC channel opening: Clearance and synergy of Orai1 gating checkpoints controls pore opening DOI 10.1101/2020.07.16.207183 Type Preprint Author Tiffner A Pages 2020.07.16.207183 Link Publication -
2020
Title STED controlled photobleaching for sub-diffractional optical nanopatterning DOI 10.1088/2515-7647/abb219 Type Journal Article Author Murtezi E Journal Journal of Physics: Photonics Pages 044003 Link Publication -
2020
Title Nanoscopic Approach to Study the Early Stages of Epithelial to Mesenchymal Transition (EMT) of Human Retinal Pigment Epithelial (RPE) Cells In Vitro DOI 10.3390/life10080128 Type Journal Article Author Chtcheglova L Journal Life Pages 128 Link Publication -
2022
Title Calcium Signals during SARS-CoV-2 Infection: Assessing the Potential of Emerging Therapies DOI 10.3390/cells11020253 Type Journal Article Author Berlansky S Journal Cells Pages 253 Link Publication -
2017
Title Simultaneous AFM topography and recognition imaging at the plasma membrane of mammalian cells DOI 10.1016/j.semcdb.2017.08.025 Type Journal Article Author Chtcheglova L Journal Seminars in Cell & Developmental Biology Pages 45-56 Link Publication -
2017
Title Regenerative biosensor for use with biotinylated bait molecules DOI 10.1016/j.bios.2017.07.033 Type Journal Article Author Knoglinger C Journal Biosensors and Bioelectronics Pages 684-690 Link Publication -
2017
Title Detailed Evidence for an Unparalleled Interaction Mode between Calmodulin and Orai Proteins DOI 10.1002/anie.201708667 Type Journal Article Author Traxler L Journal Angewandte Chemie International Edition Pages 15755-15759 Link Publication -
2017
Title Silver-, calcium-, and copper molybdate compounds: Preparation, antibacterial activity, and mechanisms DOI 10.1116/1.4996434 Type Journal Article Author Tanasic D Journal Biointerphases Link Publication -
2017
Title Synthesis of block copolymers by mechanistic transformation from photoinitiated cationic polymerization to a RAFT process DOI 10.1039/c7py01707c Type Journal Article Author Puglisi A Journal Polymer Chemistry Pages 7307-7310 -
2017
Title Theory of FRET “Spectroscopic Ruler” for Short Distances: Application to Polyproline DOI 10.1021/acs.jpcb.7b09535 Type Journal Article Author Sobakinskaya E Journal The Journal of Physical Chemistry B Pages 54-67 Link Publication -
2017
Title YidC and SecYEG form a heterotetrameric protein translocation channel DOI 10.1038/s41598-017-00109-8 Type Journal Article Author Sachelaru I Journal Scientific Reports Pages 101 Link Publication -
2021
Title Dissecting gating mechanisms of Orai calcium channel paralogs using constitutively active Orai mutants that mimic STIM1-gated state DOI 10.1101/2021.10.26.465861 Type Preprint Author Augustynek B Pages 2021.10.26.465861 Link Publication -
2021
Title Structural determinants of a permeation barrier of the SecYEG translocon in the active state DOI 10.1039/d1cp02702f Type Journal Article Author Sobakinskaya E Journal Physical Chemistry Chemical Physics Pages 25830-25840 Link Publication -
2021
Title Transmembrane Domain 3 (TM3) Governs Orai1 and Orai3 Pore Opening in an Isoform-Specific Manner DOI 10.3389/fcell.2021.635705 Type Journal Article Author Tiffner A Journal Frontiers in Cell and Developmental Biology Pages 635705 Link Publication -
2017
Title Characterization of the Orai-Calmodulin Interaction as Potential Mediator of Calcium-Dependent Orai-Channel Inactivation DOI 10.1016/j.bpj.2016.11.1017 Type Journal Article Author Traxler L Journal Biophysical Journal Link Publication -
2017
Title New Thiol-Reactive Eu-Complex for Distance Measurements by LRET DOI 10.1016/j.bpj.2016.11.2425 Type Journal Article Author Faschinger F Journal Biophysical Journal Link Publication -
2017
Title Curli Mediate Bacterial Adhesion to Fibronectin via a Tensile Collective Binding Network DOI 10.1016/j.bpj.2016.11.3165 Type Journal Article Author Oh Y Journal Biophysical Journal Link Publication -
2017
Title Stable immobilisation of His-tagged proteins on BLI biosensor surface using cobalt DOI 10.1016/j.snb.2016.11.090 Type Journal Article Author Auer S Journal Sensors and Actuators B: Chemical Pages 104-113 Link Publication -
2017
Title Convenient Biological Interaction Analysis with a Regenerative Streptavidin Chip DOI 10.1016/j.bpj.2016.11.2668 Type Journal Article Author Traxler L Journal Biophysical Journal Link Publication -
2017
Title Regulation of Proton Migration along the Membrane Surface DOI 10.1016/j.bpj.2016.11.1500 Type Journal Article Author Weichselbaum E Journal Biophysical Journal Link Publication -
2017
Title Forces and Dynamics in Protein Translocation through the Bacterial Translocon DOI 10.1016/j.bpj.2016.11.918 Type Journal Article Author Fis A Journal Biophysical Journal Link Publication -
2017
Title Bip Binding Affects Integration of Transmembrane Domains DOI 10.1016/j.bpj.2016.11.2707 Type Journal Article Author Zimmermann M Journal Biophysical Journal -
2017
Title Caged Protons as Tools for Studying Transport of Protons along Lipid Bilayers DOI 10.1016/j.bpj.2016.11.1501 Type Journal Article Author Österbauer M Journal Biophysical Journal Link Publication -
2016
Title Varying label density allows artifact-free analysis of membrane-protein nanoclusters DOI 10.1038/nmeth.3897 Type Journal Article Author Baumgart F Journal Nature Methods Pages 661-664 Link Publication -
2015
Title Resonance assignment of PsbP: an extrinsic protein from photosystem II of Spinacia oleracea DOI 10.1007/s12104-015-9606-2 Type Journal Article Author Rathner A Journal Biomolecular NMR Assignments Pages 341-346 Link Publication -
2015
Title Pushing Micropatterning to the Nanoscale DOI 10.1016/j.bpj.2014.11.3431 Type Journal Article Author Fölser M Journal Biophysical Journal Link Publication -
2015
Title Solution NMR and molecular dynamics reveal a persistent alpha helix within the dynamic region of PsbQ from photosystem II of higher plants DOI 10.1002/prot.24853 Type Journal Article Author Rathner P Journal Proteins: Structure, Function, and Bioinformatics Pages 1677-1686 Link Publication