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Plant Surfaces and Interfaces in Plants: Lignin, Suberin and Cutin

Plant Surfaces and Interfaces in Plants: Lignin, Suberin and Cutin

Notburga Gierlinger (ORCID: 0000-0002-3699-9931)
  • Grant DOI 10.55776/Y728
  • Funding program FWF START Award
  • Status ended
  • Start April 1, 2014
  • End March 31, 2022
  • Funding amount € 1,196,828
  • Project website

Disciplines

Biology (30%); Agriculture and Forestry, Fishery (40%); Materials Engineering (30%)

Keywords

    Plant Cell Wall, Lignin, Xylem, Suberin, Cuticula, Raman Microscopy

Abstract Final report

As plants evolved from aquatic to terrestrial environment complex phenolic compounds (lignin) and natural polyesters (cutin, suberin) have played a major role by building hydrophobic surfaces and interfaces. The deposition of lignin as an additional interface between the cellulose microfibrils and hemicelluloses has been essential for the functioning of the developed water conducting elements (xylem) and for mechanical strength to reach considerable heights. The outermost surfaces had to be adapted to regulate water loss, which has been achieved by suberisation (stem, root) and cutinisation (leaf). Although general principles on the three compounds are known, they are the least understood plant polymers due to their high variability in amount and structure and still unresolved questions regarding polymerisation. Adaptation to survive in the great variety of habitats has resulted in quite diverse body plans that require highly specialized tissues with distinct properties and functions. These are achieved by changing composition and structure at the different hierarchical levels (mm-m-nm) and there is still a huge knowledge gap on the microchemistry and nanostructure of the native cell walls and its interfaces and surfaces. We will bridge this gap by application of non-destructive Raman imaging and Atomic force microscopy (AFM). Raman imaging gives access to the chemical composition on the micro level and AFM complements by elucidating nanostructure and-mechanics. Every Raman image is based on thousands of spectra, each a position resolved (0.3m) molecular fingerprint of the cell wall. Currently only a part of the chemical and structural information in the Raman signature is extracted and we aim at maximising the knowledge gain by applying new multivariate data analysis approaches. To drive the chemical information below the diffraction limit of light for probing tiny plant interfaces and surfaces we will explore the challenging tip-enhanced Raman spectroscopy (TERS) technique. With these sophisticated in-situ approaches we will 1) follow the lignification spatially resolved within the native cell wall to tackle unresolved questions around lignin polymerisation, 2) reveal the chemistry and structure of tracheid and vessel walls on the micro and nano level (including vessel surface and pit membranes) and its implications on hydraulic and mechanical properties 3) investigate the microchemistry and nanostructure of suberized and cutinized layers and its relation to the barrier properties, 4) additionally assess the impact of water stress as drought is becoming more and more a limiting factor for tree growth. New insights into the micro and nano distribution and composition of the plant polymers and as affected by drought stress will be gained and important structure-function relationships revealed. This will break new scientific grounds in the field of plant physiology (plant hydraulics, lipophilic barriers) and wood science (lignification, material properties) and have an impact on optimised plant feedstock development (forestry, agriculture, breeding, genetic engineering) and utilisation (biorefinery, pulp and paper, biopolymers) and probably inspire new biomimetic approaches.

As plants evolved from aquatic to terrestrial environment three complex polymers, lignin, suberin, and cutin, have played a major role. These hydrophobic components impregnate plant surfaces and interfaces to ensure plant survival in a great variety of terrestrial habitats. Plants build tissues with distinct properties and functions by changing composition and structure at the different hierarchical levels (mm-m-nm). Cellulose microfibrils and other carbohydrates build the basis and then aromatic and lipidic components modify plant surfaces and interfaces. These "modifiers" are the least understood plant polymers due to their high variability in amount and structure and unknown distribution and interactions on the micro- and nano-level. In this project we tackled microchemistry of native plant tissues by Raman microscopy. This spectroscopic imaging approach is based on the interaction of laser light with the plants molecules, resulting in the energy of the laser photons being shifted up or down. The energy shift (Raman spectrum) gives information about the vibrational modes and thus molecular structure at any pixel (0.3 x 0.3 m). In each scan, thousands of Raman spectra were acquired and used to calculate chemical images based on univariate and multivariate analysis methods. Especially, unmixing and mixture analysis resulted in the most informative chemical images and purest component spectra. The purest component and multicomponent spectra were compared or fit with spectra of our unique database, which now comprises about 300 plant relevant reference spectra. This enabled us to interpret multicomponent spectra and visualize all components, carbohydrates, aromatics and lipids, at once within the native plant tissues and surfaces on the microscale. Our methodological advances paved the way for new insights into lignification of plant cell walls in different species and mutants and to reveal the impact of lignin on mechanical properties as well as the influence of drought. In plant surfaces, we imaged for the first time phenolic acids as well as flavonoids within the cuticle and at the interface to the epidermal layers, which resulted in new models and a discussion of the role of aromatics in the cuticle. To enlarge the view on the nanoscale, we combined Raman and Atomic force microscopy and with the nanoscale tip "feeling" the surface we succeeded to image nanochemistry in compressed wood based on adhesion values. The results suggested a new more "loose" cell wall model based on flexible lignin nanodomains and advanced our knowledge of the molecular reorganization during wood deformation. Our research opens new scientific grounds in the field of plant physiology and wood science, can have an impact on optimised plant feedstock development (forestry, agriculture, breeding, genetic engineering) as well as utilisation (biorefinery, pulp and paper, biopolymers) and has potential to inspire biomimetic nature based solutions.

Research institution(s)
  • Universität für Bodenkultur Wien - 100%
International project participants
  • Kurt Fagerstedt, Helsinki University - Finland
  • Hermann Höfte, INRA - Centre de recherche de Versailles-Grignon - France
  • Hervé Cochard, Institut National de la Recherche Agronomique - France
  • Anna De Juan, University of Barcelona - Spain
  • Björn Sundberg, Swedish University of Agricultural Sciences - Sweden
  • Ingo Burgert, ETH Zürich - Switzerland

Research Output

  • 1398 Citations
  • 61 Publications
  • 3 Disseminations
  • 7 Scientific Awards
  • 2 Fundings
Publications
  • 2020
    Title The vibrations of lignin - A discussion of the IR and Raman spectra of G-lignins and model compounds
    Type PhD Thesis
    Author Peter; Bock
    Link Publication
  • 2018
    Title Multivariate unmixing approaches on Raman images of plant cell walls: New insights or overinterpretation of results?
    DOI 10.3929/ethz-b-000275755
    Type Other
    Author Felhofer
    Link Publication
  • 2018
    Title MOESM4 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742385.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM3 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742364.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM2 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742343.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM10 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742298.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM1 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742322.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM6 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742418.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM5 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742403.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM7 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742433.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM9 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742463.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2018
    Title MOESM8 of Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.6084/m9.figshare.6742448.v1
    Type Other
    Author Batirtze Prats-Mateu
    Link Publication
  • 2021
    Title A Guide to Elucidate the Hidden Multicomponent Layered Structure of Plant Cuticles by Raman Imaging
    DOI 10.3389/fpls.2021.793330
    Type Journal Article
    Author Bock P
    Journal Frontiers in Plant Science
    Pages 793330
    Link Publication
  • 2021
    Title REPRISAL: mapping lignification dynamics using chemistry, data segmentation, and ratiometric analysis
    DOI 10.1093/plphys/kiab490
    Type Journal Article
    Author Morel O
    Journal Plant Physiology
    Pages 816-830
    Link Publication
  • 2021
    Title Cell wall characteristics during sexual reproduction of Mougeotia sp. (Zygnematophyceae) revealed by electron microscopy, glycan microarrays and RAMAN spectroscopy
    DOI 10.1007/s00709-021-01659-5
    Type Journal Article
    Author Permann C
    Journal Protoplasma
    Pages 1261-1275
    Link Publication
  • 2021
    Title Physiological and anatomical responses to drought stress differ between two larch species and their hybrid
    DOI 10.1007/s00468-021-02129-4
    Type Journal Article
    Author Sasani N
    Journal Trees
    Pages 1467-1484
    Link Publication
  • 2016
    Title Tip in–light on: Advantages, challenges, and applications of combining AFM and Raman microscopy on biological samples
    DOI 10.1002/jemt.22744
    Type Journal Article
    Author Prats-Mateu B
    Journal Microscopy Research and Technique
    Pages 30-40
    Link Publication
  • 2021
    Title Raman imaging reveals in-situ microchemistry of cuticle and epidermis of spruce needles
    DOI 10.1186/s13007-021-00717-6
    Type Journal Article
    Author Sasani N
    Journal Plant Methods
    Pages 17
    Link Publication
  • 2021
    Title Oak wood drying: precipitation of crystalline ellagic acid leads to discoloration
    DOI 10.1515/hf-2020-0170
    Type Journal Article
    Author Felhofer M
    Journal Holzforschung
    Pages 712-720
    Link Publication
  • 2021
    Title Induction of Conjugation and Zygospore Cell Wall Characteristics in the Alpine Spirogyra mirabilis (Zygnematophyceae, Charophyta): Advantage under Climate Change Scenarios?
    DOI 10.3390/plants10081740
    Type Journal Article
    Author Permann C
    Journal Plants
    Pages 1740
    Link Publication
  • 2021
    Title Raman imaging of Micrasterias: new insights into shape formation
    DOI 10.1007/s00709-021-01685-3
    Type Journal Article
    Author Felhofer M
    Journal Protoplasma
    Pages 1323-1334
    Link Publication
  • 2018
    Title Tip in, light on: Raman and AFM studies of biological materials
    Type PhD Thesis
    Author Batirtze; Prats-Mateu
    Link Publication
  • 2018
    Title Electrically Conducting Carbon Microparticles by Direct Carbonization of Spent Wood Pulping Liquor
    DOI 10.1021/acssuschemeng.7b03582
    Type Journal Article
    Author Ko¨Hnke J
    Journal ACS Sustainable Chemistry & Engineering
    Pages 3385-3391
  • 2018
    Title Raman Imaging of Plant Cell Walls
    DOI 10.1007/978-3-319-75380-5_19
    Type Book Chapter
    Author Gierlinger N
    Publisher Springer Nature
    Pages 471-482
  • 2017
    Title Climate-Dependent Heat-Triggered Opening Mechanism of Banksia Seed Pods
    DOI 10.1002/advs.201700572
    Type Journal Article
    Author Huss J
    Journal Advanced Science
    Pages 1700572
    Link Publication
  • 2017
    Title The effect of altered lignin composition on mechanical properties of CINNAMYL ALCOHOL DEHYDROGENASE (CAD) deficient poplars
    DOI 10.1007/s00425-017-2828-z
    Type Journal Article
    Author Özparpucu M
    Journal Planta
    Pages 887-897
  • 2017
    Title Vessel-Specific Reintroduction of CINNAMOYL-COA REDUCTASE1 (CCR1) in Dwarfed ccr1 Mutants Restores Vessel and Xylary Fiber Integrity and Increases Biomass
    DOI 10.1104/pp.17.01462
    Type Journal Article
    Author De Meester B
    Journal Plant Physiology
    Pages 611-633
    Link Publication
  • 2017
    Title New Insights into Plant Cell Walls by Vibrational Microspectroscopy
    Type Postdoctoral Thesis
    Author Notburga, Gierlinger
  • 2017
    Title Unravelling the impact of lignin on cell wall mechanics: a comprehensive study on young poplar trees downregulated for CINNAMYL ALCOHOL DEHYDROGENASE (CAD)
    DOI 10.1111/tpj.13584
    Type Journal Article
    Author Özparpucu M
    Journal The Plant Journal
    Pages 480-490
    Link Publication
  • 2017
    Title Complex bud architecture and cell-specific chemical patterns enable supercooling of Picea abies bud primordia
    DOI 10.1111/pce.13078
    Type Journal Article
    Author Kuprian E
    Journal Plant, Cell & Environment
    Pages 3101-3112
    Link Publication
  • 2017
    Title New insights into plant cell walls by vibrational microspectroscopy
    DOI 10.1080/05704928.2017.1363052
    Type Journal Article
    Author Gierlinger N
    Journal Applied Spectroscopy Reviews
    Pages 517-551
    Link Publication
  • 2016
    Title Waterproofing in Arabidopsis: Following Phenolics and Lipids In situ by Confocal Raman Microscopy
    DOI 10.3389/tchem.2016.00010
    Type Journal Article
    Author Hauser Marie Theres
    Journal FRONTIERS IN CHEMISTRY
  • 2016
    Title Waterproofing in Arabidopsis: Following Phenolics and Lipids In situ by Confocal Raman Microscopy
    DOI 10.3389/fchem.2016.00010
    Type Journal Article
    Author Mateu B
    Journal Frontiers in Chemistry
    Pages 10
    Link Publication
  • 2018
    Title Temperature-induced self-sealing capability of Banksia follicles
    DOI 10.1098/rsif.2018.0190
    Type Journal Article
    Author Huss J
    Journal Journal of The Royal Society Interface
    Pages 20180190
    Link Publication
  • 2018
    Title Antifungal stilbene impregnation: transport and distribution on the micron-level
    DOI 10.1093/treephys/tpy073
    Type Journal Article
    Author Felhofer M
    Journal Tree Physiology
    Pages 1526-1537
    Link Publication
  • 2018
    Title Electrically-Conductive Sub-Micron Carbon Particles from Lignin: Elucidation of Nanostructure and Use as Filler in Cellulose Nanopapers
    DOI 10.3390/nano8121055
    Type Journal Article
    Author Köhnke J
    Journal Nanomaterials
    Pages 1055
    Link Publication
  • 2018
    Title Multivariate unmixing approaches on Raman images of plant cell walls: new insights or overinterpretation of results?
    DOI 10.1186/s13007-018-0320-9
    Type Journal Article
    Author Prats-Mateu B
    Journal Plant Methods
    Pages 52
    Link Publication
  • 2018
    Title Biomineralization of strontium and barium contributes to detoxification in the freshwater alga Micrasterias
    DOI 10.1016/j.jplph.2018.08.008
    Type Journal Article
    Author Niedermeier M
    Journal Journal of Plant Physiology
    Pages 80-91
    Link Publication
  • 2018
    Title Following laser induced changes of plant phenylpropanoids by Raman microscopy
    DOI 10.1038/s41598-018-30096-3
    Type Journal Article
    Author Prats-Mateu B
    Journal Scientific Reports
    Pages 11804
    Link Publication
  • 2018
    Title Lignification and Advances in Lignin Imaging in Plant Cell Walls
    DOI 10.1002/9781119312994.apr0656
    Type Book Chapter
    Author Simon C
    Publisher Wiley
    Pages 909-940
  • 2018
    Title Hydraulic and mechanical dysfunction of Norway spruce sapwood due to extreme summer drought in Scandinavia
    DOI 10.1016/j.foreco.2017.11.051
    Type Journal Article
    Author Rosner S
    Journal Forest Ecology and Management
    Pages 527-540
    Link Publication
  • 2022
    Title The walnut shell network: 3D visualisation of symplastic and apoplastic transport routes in sclerenchyma tissue
    DOI 10.1007/s00425-022-03960-w
    Type Journal Article
    Author Antreich S
    Journal Planta
    Pages 49
    Link Publication
  • 2020
    Title Atypical lignification in eastern leatherwood (Dirca palustris)
    DOI 10.1111/nph.16394
    Type Journal Article
    Author Mottiar Y
    Journal New Phytologist
    Pages 704-713
    Link Publication
  • 2020
    Title Infrared and Raman spectra of lignin substructures: Dibenzodioxocin
    DOI 10.1002/jrs.5808
    Type Journal Article
    Author Bock P
    Journal Journal of Raman Spectroscopy
    Pages 422-431
    Link Publication
  • 2022
    Title 3D (x-y-t) Raman imaging of tomato fruit cuticle: microchemistry during development
    DOI 10.1101/2022.06.01.494410
    Type Preprint
    Author Moreno A
    Pages 2022.06.01.494410
    Link Publication
  • 2023
    Title Chemical tissue heterogeneity of young Arabidopsis stems revealed by Raman imaging combined with multivariate data analysis
    DOI 10.1016/j.microc.2023.108900
    Type Journal Article
    Author Morel O
    Journal Microchemical Journal
    Pages 108900
    Link Publication
  • 2020
    Title Raman Imaging of Plant Cell Walls
    DOI 10.1007/978-1-0716-0621-6_15
    Type Book Chapter
    Author Mateu B
    Publisher Springer Nature
    Pages 251-295
  • 2020
    Title Wood Deformation Leads to Rearrangement of Molecules at the Nanoscale
    DOI 10.1021/acs.nanolett.0c00205
    Type Journal Article
    Author Felhofer M
    Journal Nano Letters
    Pages 2647-2653
    Link Publication
  • 2020
    Title From the Soft to the Hard: Changes in Microchemistry During Cell Wall Maturation of Walnut Shells
    DOI 10.3389/fpls.2020.00466
    Type Journal Article
    Author Xiao N
    Journal Frontiers in Plant Science
    Pages 466
    Link Publication
  • 2020
    Title A millennium-long Blue Ring chronology from the Spanish Pyrenees reveals severe ephemeral summer cooling after volcanic eruptions
    DOI 10.1088/1748-9326/abc120
    Type Journal Article
    Author Piermattei A
    Journal Environmental Research Letters
    Pages 124016
    Link Publication
  • 2019
    Title Lignin-based multiwall carbon nanotubes
    DOI 10.1016/j.compositesa.2019.03.026
    Type Journal Article
    Author Gindl-Altmutter W
    Journal Composites Part A: Applied Science and Manufacturing
    Pages 175-179
  • 2019
    Title Significant influence of lignin on axial elastic modulus of poplar wood at low microfibril angles under wet conditions
    DOI 10.1093/jxb/erz180
    Type Journal Article
    Author Özparpucu M
    Journal Journal of Experimental Botany
    Pages 4039-4047
    Link Publication
  • 2019
    Title Infrared and Raman spectra of lignin substructures: Coniferyl alcohol, abietin, and coniferyl aldehyde
    DOI 10.1002/jrs.5588
    Type Journal Article
    Author Bock P
    Journal Journal of Raman Spectroscopy
    Pages 778-792
    Link Publication
  • 2019
    Title The Puzzle of the Walnut Shell: A Novel Cell Type with Interlocked Packing
    DOI 10.1002/advs.201900644
    Type Journal Article
    Author Antreich S
    Journal Advanced Science
    Pages 1900644
    Link Publication
  • 2022
    Title 3D (x-y-t) Raman imaging of tomato fruit cuticle: Microchemistry during development
    DOI 10.1093/plphys/kiac369
    Type Journal Article
    Author Moreno A
    Journal Plant Physiology
    Pages 219-232
    Link Publication
  • 2022
    Title Tracing biotic and abiotic stress reactions on the micro-level in softwood tracheids and cuticles
    Type PhD Thesis
    Author Nadia; Sasani
    Link Publication
  • 2014
    Title Revealing changes in molecular composition of plant cell walls on the micron-level by Raman mapping and vertex component analysis (VCA)
    DOI 10.3389/fpls.2014.00306
    Type Journal Article
    Author Gierlinger N
    Journal Frontiers in Plant Science
    Pages 306
    Link Publication
  • 2014
    Title Elucidating structural and compositional changes in plant tissues and single cells by Raman spectroscopic imaging
    Type Journal Article
    Author Mateu B.P.
    Journal Spectroscopy Europe
    Pages 11-14
    Link Publication
  • 2016
    Title Label-free live cell imaging by Confocal Raman Microscopy identifies CHO host and producer cell lines
    DOI 10.1002/biot.201600037
    Type Journal Article
    Author Mateu B
    Journal Biotechnology Journal
    Pages 1600037
    Link Publication
  • 2020
    Title A synoptic view on intra-annual density fluctuations in Abies alba
    DOI 10.1016/j.dendro.2020.125781
    Type Journal Article
    Author Mayer K
    Journal Dendrochronologia
    Pages 125781
    Link Publication
  • 2020
    Title Winter Nights during Summer Time: Stress Physiological Response to Ice and the Facilitation of Freezing Cytorrhysis by Elastic Cell Wall Components in the Leaves of a Nival Species
    DOI 10.3390/ijms21197042
    Type Journal Article
    Author Stegner M
    Journal International Journal of Molecular Sciences
    Pages 7042
    Link Publication
Disseminations
  • 2015 Link
    Title Kinderuni Wien
    Type Participation in an activity, workshop or similar
    Link Link
  • 2015 Link
    Title Junior Science club
    Type Participation in an activity, workshop or similar
    Link Link
  • 2016
    Title Raman-Mikroskopie in Wien: Wassershutz für Pflanzen
    Type A press release, press conference or response to a media enquiry/interview
Scientific Awards
  • 2021
    Title BOKU Talent Award
    Type Research prize
    Level of Recognition National (any country)
  • 2019
    Title Symposium "Moderne bildgebende Verfahren: Das unsichtbare sichtbar machen" (ÖAW, Wien)
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2019
    Title WITec paper award gold
    Type Poster/abstract prize
    Level of Recognition Continental/International
  • 2018
    Title Wood Nanotechnology conference, Ascona, Switzerland: Invited Speaker
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2017
    Title Invited keynote: 253rd ACS meeting San Francisio
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2017
    Title DOC - Stipendium (ÖAW)
    Type Research prize
    Level of Recognition National (any country)
  • 2017
    Title Klaus Fischer - Innovationspreis für Technik und Umwelt
    Type Research prize
    Level of Recognition National (any country)
Fundings
  • 2017
    Title Shed new light on heartwood formation
    Type Fellowship
    Start of Funding 2017
  • 2016
    Title Scattering and tapping on soft-hard-open nuts
    Type Research grant (including intramural programme)
    Start of Funding 2016

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