Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency
Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency
Disciplines
Biology (70%); Agriculture and Forestry, Fishery (30%)
Keywords
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Nitrogen,
Rhizosphere,
Soil,
Microbiology,
Nitrification Inhibition,
Metabolomics
Each year, humans apply enough industrially produced nitrogen-based fertilizer, to effectively double the input of bioavailable nitrogen in the environment. This has allowed for a massive increase in food production during the 20th century (green revolution) and is necessary to nutritionally sustain the global population. Currently, about half of humanity is dependent on food that could not have been produced without industrial nitrogen fertilization. However, the additional input of reactive nitrogen into the environment has also caused a massive unbalancing of the natural nitrogen cycle that led to devastating ecological consequences. Excessive or ill- designed nitrogen fertilization regimes cause the emission of large amounts of nitrous oxide - a greenhous e gas 300 times more potent than carbon dioxide - from cropped fields. In addition, it also leads to mas s ive pollution of aquatic environments with nitrate, and contributes to a major problem for the health of the planet known as eutrophication. Nitrogen-based agricultural fertilizers are most often applied in the form of ammonia or urea. However, crops compete with microorganisms in the soil for these nitrogenous compounds. Some groups of microorganisms (nitrifiers and denitrifiers) transform the added nitrogen fertilizer, and their activity leads to large fertilizer loss by the production of gaseous compounds like nitrous oxide and by nitrate formation that is easily washed out from soils. Current methods to inhibit soil nitrification as the primary cause of nitrogen fertilizer loss often involve the use of synthetic nitrification inhibitors (SNIs) that are applied to agricultural fields alongside fertilizers. However, many SNIs are short lived and have unknown effects on the broader soil microbial community and plants. Moreover, their effect on humans and animals is largely unknown. In this research project, we aim to identify and extensively characterize plant-derived biological nitrification inhibitors (BNIs). We hypothesize that by inhibiting soil nitrific ation with BNIs we can increase the nitrogen retention in agricultural soils and plant nitrogen use efficiency. In this research project, we take an interdisciplinary approach from various fields within the life sciences to identify and characterize natural, plant - derived BNIs. We will utilize cutting edge technologies in the fields of plant chemistry, microbial physiology, and biogeochemistry to create a holistic view of the impact of BNIs on the health of plants and the soil microbiome. This innovative research project will be a collaborative effort between researchers from the University of Vienna and the University of Natural Resources and Life Sciences, Vienna.
Industrial agriculture has significantly increased the availability of bioavailable nitrogen in soils, enabling the food production that currently feeds about half of the world's population. At the same time, this high nitrogen input has caused serious environmental problems: large emissions of nitrous oxide, a greenhouse gas approximately 300 times more potent than CO, as well as widespread contamination of groundwater, rivers, and oceans with nitrate, which contributes to global eutrophication. A substantial part of these nitrogen losses results from the activity of soil microorganisms, which convert nitrogen into forms such as nitrate or nitrous oxide that are easily lost from the soil. To reduce these losses, synthetic nitrification inhibitors (SNI) are commonly used. SNIs act over long periods, effectively suppressing nitrification, but they can persist in the soil and potentially affect other microbial processes. In our project, we investigated plant-produced biological nitrification inhibitors (BNI) as a natural alternative. BNIs act in a targeted manner, degrade relatively quickly in the soil, and show minimal or no negative effects on other important microbial processes. This allows them to function specifically when nitrogen fertilizer is applied, without accumulating in the soil over time-a key advantage over synthetic inhibitors. Our results showed that the effectiveness of BNI depends strongly on soil type. In some soils, BNI were less effective, while in others they inhibited nitrification to a similar degree as established synthetic inhibitors. This demonstrates that BNI can, under suitable conditions, significantly reduce nitrogen losses and improve fertilizer efficiency without negatively affecting soil ecosystems. Throughout the project, we combined molecular, metabolomic, microbiological, and soil ecological approaches to identify different BNI and their degradation products, clarify their mechanisms of action, and investigate their role in plant-microbe interactions. We also observed that complex interactions between soil chemistry and soil microbial communities limit the direct transferability of results from one soil type to another. Further studies are therefore needed to reliably predict BNI effectiveness across different soils. Overall, the project provides an important scientific foundation for more sustainable agricultural practices. Plant-based nitrification inhibitors have the potential to reduce nitrogen losses, lower greenhouse gas emissions, protect water resources, and allow for a more targeted and environmentally friendly use of synthetic inhibitors. BNIs thus offer promising opportunities for the development of efficient, resource-conserving, and environmentally sustainable fertilization strategies in agriculture.
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coordinator (01.10.2020 - 30.09.2025)
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consortium member (25.06.2024 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
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consortium member (01.10.2020 - 30.09.2025)
- Universität Wien
Research Output
- 226 Citations
- 16 Publications
- 12 Datasets & models
- 2 Disseminations
- 1 Fundings
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2025
Title Accuracy, linearity, and statistical differences in comparative quantification in untargeted plant metabolomics using LC-ESI-Orbitrap-MS DOI 10.1007/s00216-025-05818-y Type Journal Article Author Maisl C Journal Analytical and Bioanalytical Chemistry -
2025
Title Arbuscular mycorrhiza suppresses microbial abundance, and particularly that of ammonia oxidizing bacteria, in agricultural soils DOI 10.3389/fmicb.2025.1671859 Type Journal Article Author Sun D Journal Frontiers in Microbiology -
2025
Title Unusual Plastoquinones in Non-Phototrophic Nitrifying Bacteria DOI 10.1111/1758-2229.70174 Type Journal Article Author Bale N Journal Environmental Microbiology Reports -
2024
Title Growth of complete ammonia oxidizers on guanidine. DOI 10.1038/s41586-024-07832-z Type Journal Article Author Herbold Cw Journal Nature Pages 646-653 -
2024
Title Inhibition profile of three biological nitrification inhibitors and their response to soil pH modification in two contrasting soils DOI 10.1093/femsec/fiae072 Type Journal Article Author Prommer J Journal FEMS Microbiology Ecology -
2024
Title Adaptive traits of Nitrosocosmicus clade ammonia-oxidizing archaea. DOI 10.1128/mbio.02169-24 Type Journal Article Author Han S Journal mBio -
2024
Title Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor DOI 10.1186/s40168-024-01762-8 Type Journal Article Author Rosenqvist T Journal Microbiome -
2024
Title Visualizing small-scale subsurface NH3 and pH dynamics surrounding nitrogen fertilizer granules and impacts on nitrification activity DOI 10.1016/j.soilbio.2023.109273 Type Journal Article Author Merl T Journal Soil Biology and Biochemistry -
2022
Title Arbuscular Mycorrhiza and Nitrification: Disentangling Processes and Players by Using Synthetic Nitrification Inhibitors DOI 10.1128/aem.01369-22 Type Journal Article Author Dudáš M Journal Applied and Environmental Microbiology Link Publication -
2022
Title CPExtract, a Software Tool for the Automated Tracer-Based Pathway Specific Screening of Secondary Metabolites in LC-HRMS Data DOI 10.1021/acs.analchem.1c04530 Type Journal Article Author Seidl B Journal Analytical Chemistry Pages 3543-3552 Link Publication -
2021
Title Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities DOI 10.1038/s41396-021-01064-z Type Journal Article Author Jung M Journal The ISME Journal Pages 272-283 Link Publication -
2020
Title Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth DOI 10.1128/msystems.00562-19 Type Journal Article Author Sedlacek C Journal mSystems Link Publication -
2022
Title The impacts of single and multiple global change drivers on soil microbial communities and functions DOI 10.25365/thesis.72306 Type Other Author Séneca Cardoso Da Silva J Link Publication -
2023
Title Untargeted Plant Metabolomics: Evaluation of Lyophilization as a Sample Preparation Technique DOI 10.3390/metabo13060686 Type Journal Article Author Doppler M Journal Metabolites -
2020
Title Is Too Much Fertilizer a Problem? DOI 10.3389/frym.2020.00063 Type Journal Article Author Giguere A Journal Frontiers for Young Minds -
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DOI 10.2210/pdb9fek/pdb Type Other
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2023
Link
Title MassIVE MSV000091769 - Untargeted plant metabolomics: Evaluation of lyophilization as sample preparation technique DOI 10.25345/c5tx35h06 Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100409 - Degradation of native and labelled linolenic acid by N. europaea DOI 10.25345/c5p26qh3j Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100410 - MBOA in root exudates (and leachates) of winter and wheat cultivars DOI 10.25345/c5j960p8p Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100411 - Investigation of conditions (type/amount of N fertilizer, pH of soil) influencing BNI exudation DOI 10.25345/c5dj58w4j Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100448 - Measurements of Nitrifier Exo/Endo-Metabolomes DOI 10.25345/c5n01070x Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100561 - Nitrosomonas europaea Nm50 BNI degradation experiment - MBOA and D-DMPP DOI 10.25345/c51j97n43 Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100562 - Trichoderma reesei QM6a SNI/BNI degradation experiment DOI 10.25345/c5ws8j07j Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100564 - Degradation of deuterated NIs (DMPP and MBOA) in soil DOI 10.25345/c5nc5ss2w Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100563 - Acetonitrile extracts from soil samples with added nitrification inhibitors MHPA, MBOA and Limonene DOI 10.25345/c5s17t63q Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100368 - Degradation of native and 13C-labelled linolenic acid and linoleic acid in Nitrosomonas europaea Nm 50 cultures DOI 10.25345/c5zp3wd49 Type Database/Collection of data Public Access Link Link -
2026
Link
Title MassIVE MSV000100408 - LC-HRMS of Barley Root Exudates DOI 10.25345/c5st7f97c Type Database/Collection of data Public Access Link Link -
2024
Link
Title MassIVE MSV000095588 - GNPS - Dilution series experiment of native and 13C-labelled Remus wheat ear extracts DOI 10.25345/c57h1dz6n Type Database/Collection of data Public Access Link Link
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2024
Title Pint of Science 2024 Type A talk or presentation -
2020
Title Interviews Type A press release, press conference or response to a media enquiry/interview
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2020
Title Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency Start of Funding 2020 Funder Austrian Science Fund (FWF)