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Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency

Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency

Petra Pjevac (ORCID: 0000-0001-7344-302X)
  • Grant DOI 10.55776/ZK74
  • Funding program Young Independent Researcher Group
  • Status ended
  • Start October 1, 2020
  • End September 30, 2025
  • Funding amount € 2,555,460

Disciplines

Biology (70%); Agriculture and Forestry, Fishery (30%)

Keywords

    Nitrogen, Rhizosphere, Soil, Microbiology, Nitrification Inhibition, Metabolomics

Abstract Final report

Each year, humans apply enough industrially produced nitrogen-based fertilizer, to effectively double the input of bioavailable nitrogen in the environment. This has allowed for a massive increase in food production during the 20th century (green revolution) and is necessary to nutritionally sustain the global population. Currently, about half of humanity is dependent on food that could not have been produced without industrial nitrogen fertilization. However, the additional input of reactive nitrogen into the environment has also caused a massive unbalancing of the natural nitrogen cycle that led to devastating ecological consequences. Excessive or ill- designed nitrogen fertilization regimes cause the emission of large amounts of nitrous oxide - a greenhous e gas 300 times more potent than carbon dioxide - from cropped fields. In addition, it also leads to mas s ive pollution of aquatic environments with nitrate, and contributes to a major problem for the health of the planet known as eutrophication. Nitrogen-based agricultural fertilizers are most often applied in the form of ammonia or urea. However, crops compete with microorganisms in the soil for these nitrogenous compounds. Some groups of microorganisms (nitrifiers and denitrifiers) transform the added nitrogen fertilizer, and their activity leads to large fertilizer loss by the production of gaseous compounds like nitrous oxide and by nitrate formation that is easily washed out from soils. Current methods to inhibit soil nitrification as the primary cause of nitrogen fertilizer loss often involve the use of synthetic nitrification inhibitors (SNIs) that are applied to agricultural fields alongside fertilizers. However, many SNIs are short lived and have unknown effects on the broader soil microbial community and plants. Moreover, their effect on humans and animals is largely unknown. In this research project, we aim to identify and extensively characterize plant-derived biological nitrification inhibitors (BNIs). We hypothesize that by inhibiting soil nitrific ation with BNIs we can increase the nitrogen retention in agricultural soils and plant nitrogen use efficiency. In this research project, we take an interdisciplinary approach from various fields within the life sciences to identify and characterize natural, plant - derived BNIs. We will utilize cutting edge technologies in the fields of plant chemistry, microbial physiology, and biogeochemistry to create a holistic view of the impact of BNIs on the health of plants and the soil microbiome. This innovative research project will be a collaborative effort between researchers from the University of Vienna and the University of Natural Resources and Life Sciences, Vienna.

Industrial agriculture has significantly increased the availability of bioavailable nitrogen in soils, enabling the food production that currently feeds about half of the world's population. At the same time, this high nitrogen input has caused serious environmental problems: large emissions of nitrous oxide, a greenhouse gas approximately 300 times more potent than CO, as well as widespread contamination of groundwater, rivers, and oceans with nitrate, which contributes to global eutrophication. A substantial part of these nitrogen losses results from the activity of soil microorganisms, which convert nitrogen into forms such as nitrate or nitrous oxide that are easily lost from the soil. To reduce these losses, synthetic nitrification inhibitors (SNI) are commonly used. SNIs act over long periods, effectively suppressing nitrification, but they can persist in the soil and potentially affect other microbial processes. In our project, we investigated plant-produced biological nitrification inhibitors (BNI) as a natural alternative. BNIs act in a targeted manner, degrade relatively quickly in the soil, and show minimal or no negative effects on other important microbial processes. This allows them to function specifically when nitrogen fertilizer is applied, without accumulating in the soil over time-a key advantage over synthetic inhibitors. Our results showed that the effectiveness of BNI depends strongly on soil type. In some soils, BNI were less effective, while in others they inhibited nitrification to a similar degree as established synthetic inhibitors. This demonstrates that BNI can, under suitable conditions, significantly reduce nitrogen losses and improve fertilizer efficiency without negatively affecting soil ecosystems. Throughout the project, we combined molecular, metabolomic, microbiological, and soil ecological approaches to identify different BNI and their degradation products, clarify their mechanisms of action, and investigate their role in plant-microbe interactions. We also observed that complex interactions between soil chemistry and soil microbial communities limit the direct transferability of results from one soil type to another. Further studies are therefore needed to reliably predict BNI effectiveness across different soils. Overall, the project provides an important scientific foundation for more sustainable agricultural practices. Plant-based nitrification inhibitors have the potential to reduce nitrogen losses, lower greenhouse gas emissions, protect water resources, and allow for a more targeted and environmentally friendly use of synthetic inhibitors. BNIs thus offer promising opportunities for the development of efficient, resource-conserving, and environmentally sustainable fertilization strategies in agriculture.

Consortium
  • Petra Pjevac, Universität Wien
    coordinator (01.10.2020 - 30.09.2025)
  • Petra Pjevac, Universität Wien
    consortium member (25.06.2024 - 30.09.2025)
  • Andrew T. Giguere, Universität Wien
    consortium member (01.10.2020 - 30.09.2025)
  • Lucia Fuchslueger, Universität Wien
    consortium member (01.10.2020 - 30.09.2025)
  • Christoph Büschl, Universität für Bodenkultur Wien
    consortium member (01.10.2020 - 30.09.2025)
Research institution(s)
  • Universität Wien

Research Output

  • 226 Citations
  • 16 Publications
  • 12 Datasets & models
  • 2 Disseminations
  • 1 Fundings
Publications
  • 2025
    Title Accuracy, linearity, and statistical differences in comparative quantification in untargeted plant metabolomics using LC-ESI-Orbitrap-MS
    DOI 10.1007/s00216-025-05818-y
    Type Journal Article
    Author Maisl C
    Journal Analytical and Bioanalytical Chemistry
  • 2025
    Title Arbuscular mycorrhiza suppresses microbial abundance, and particularly that of ammonia oxidizing bacteria, in agricultural soils
    DOI 10.3389/fmicb.2025.1671859
    Type Journal Article
    Author Sun D
    Journal Frontiers in Microbiology
  • 2025
    Title Unusual Plastoquinones in Non-Phototrophic Nitrifying Bacteria
    DOI 10.1111/1758-2229.70174
    Type Journal Article
    Author Bale N
    Journal Environmental Microbiology Reports
  • 2024
    Title Growth of complete ammonia oxidizers on guanidine.
    DOI 10.1038/s41586-024-07832-z
    Type Journal Article
    Author Herbold Cw
    Journal Nature
    Pages 646-653
  • 2024
    Title Inhibition profile of three biological nitrification inhibitors and their response to soil pH modification in two contrasting soils
    DOI 10.1093/femsec/fiae072
    Type Journal Article
    Author Prommer J
    Journal FEMS Microbiology Ecology
  • 2024
    Title Adaptive traits of Nitrosocosmicus clade ammonia-oxidizing archaea.
    DOI 10.1128/mbio.02169-24
    Type Journal Article
    Author Han S
    Journal mBio
  • 2024
    Title Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor
    DOI 10.1186/s40168-024-01762-8
    Type Journal Article
    Author Rosenqvist T
    Journal Microbiome
  • 2024
    Title Visualizing small-scale subsurface NH3 and pH dynamics surrounding nitrogen fertilizer granules and impacts on nitrification activity
    DOI 10.1016/j.soilbio.2023.109273
    Type Journal Article
    Author Merl T
    Journal Soil Biology and Biochemistry
  • 2022
    Title Arbuscular Mycorrhiza and Nitrification: Disentangling Processes and Players by Using Synthetic Nitrification Inhibitors
    DOI 10.1128/aem.01369-22
    Type Journal Article
    Author Dudáš M
    Journal Applied and Environmental Microbiology
    Link Publication
  • 2022
    Title CPExtract, a Software Tool for the Automated Tracer-Based Pathway Specific Screening of Secondary Metabolites in LC-HRMS Data
    DOI 10.1021/acs.analchem.1c04530
    Type Journal Article
    Author Seidl B
    Journal Analytical Chemistry
    Pages 3543-3552
    Link Publication
  • 2021
    Title Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities
    DOI 10.1038/s41396-021-01064-z
    Type Journal Article
    Author Jung M
    Journal The ISME Journal
    Pages 272-283
    Link Publication
  • 2020
    Title Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth
    DOI 10.1128/msystems.00562-19
    Type Journal Article
    Author Sedlacek C
    Journal mSystems
    Link Publication
  • 2022
    Title The impacts of single and multiple global change drivers on soil microbial communities and functions
    DOI 10.25365/thesis.72306
    Type Other
    Author Séneca Cardoso Da Silva J
    Link Publication
  • 2023
    Title Untargeted Plant Metabolomics: Evaluation of Lyophilization as a Sample Preparation Technique
    DOI 10.3390/metabo13060686
    Type Journal Article
    Author Doppler M
    Journal Metabolites
  • 2020
    Title Is Too Much Fertilizer a Problem?
    DOI 10.3389/frym.2020.00063
    Type Journal Article
    Author Giguere A
    Journal Frontiers for Young Minds
  • 0
    DOI 10.2210/pdb9fek/pdb
    Type Other
Datasets & models
  • 2023 Link
    Title MassIVE MSV000091769 - Untargeted plant metabolomics: Evaluation of lyophilization as sample preparation technique
    DOI 10.25345/c5tx35h06
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100409 - Degradation of native and labelled linolenic acid by N. europaea
    DOI 10.25345/c5p26qh3j
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100410 - MBOA in root exudates (and leachates) of winter and wheat cultivars
    DOI 10.25345/c5j960p8p
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100411 - Investigation of conditions (type/amount of N fertilizer, pH of soil) influencing BNI exudation
    DOI 10.25345/c5dj58w4j
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100448 - Measurements of Nitrifier Exo/Endo-Metabolomes
    DOI 10.25345/c5n01070x
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100561 - Nitrosomonas europaea Nm50 BNI degradation experiment - MBOA and D-DMPP
    DOI 10.25345/c51j97n43
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100562 - Trichoderma reesei QM6a SNI/BNI degradation experiment
    DOI 10.25345/c5ws8j07j
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100564 - Degradation of deuterated NIs (DMPP and MBOA) in soil
    DOI 10.25345/c5nc5ss2w
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100563 - Acetonitrile extracts from soil samples with added nitrification inhibitors MHPA, MBOA and Limonene
    DOI 10.25345/c5s17t63q
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100368 - Degradation of native and 13C-labelled linolenic acid and linoleic acid in Nitrosomonas europaea Nm 50 cultures
    DOI 10.25345/c5zp3wd49
    Type Database/Collection of data
    Public Access
    Link Link
  • 2026 Link
    Title MassIVE MSV000100408 - LC-HRMS of Barley Root Exudates
    DOI 10.25345/c5st7f97c
    Type Database/Collection of data
    Public Access
    Link Link
  • 2024 Link
    Title MassIVE MSV000095588 - GNPS - Dilution series experiment of native and 13C-labelled Remus wheat ear extracts
    DOI 10.25345/c57h1dz6n
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 2024
    Title Pint of Science 2024
    Type A talk or presentation
  • 2020
    Title Interviews
    Type A press release, press conference or response to a media enquiry/interview
Fundings
  • 2020
    Title Interplay between biological nitrification inhibitors, nitrogen cycling and agronomic nitrogen use efficiency
    Start of Funding 2020
    Funder Austrian Science Fund (FWF)

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