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Structure and Regulation of the Myofibrillar Z-disc Interactome

Structure and Regulation of the Myofibrillar Z-disc Interactome

Kristina Djinovic-Carugo (ORCID: 0000-0003-0252-2972)
  • Grant DOI 10.55776/I1593
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start May 1, 2014
  • End April 30, 2019
  • Funding amount € 240,062
  • Project website

DACH: Österreich - Deutschland - Schweiz

Disciplines

Biology (100%)

Keywords

    Muscle Z-disc Interactome, Filamin C Myopodin-2, Post-translational Modifications, Autophagy VPS18, Macromolecular Crystallography, Integrative Structural Biology

Abstract Final report

Mature Z-discs are composed of a plethora of different proteins, and they may be regarded as one of the most complex macromolecular structures in biology. This intricate web of interactions needs to be continuously finely tuned and maintained. Recent studies have suggested an important role of signalling pathways in regulating the dynamics and turnover of Z-disc components and of chaperone-assisted selective autophagy (CASA) in the maintenance of Z-disc structure and function. In the second phase of this project we aim to address two main questions: (1) How does phosphorylation modulate selected protein-protein interactions of Z-disc complexes, in particular those of filamin C with its interaction partners? (2) How does myopodin/SYNPO2 mediate interactions with the autophagosome formation sub-complex of the CASA machinery? Both projects will be performed employing integrative structural biology approaches, in which high resolution structural studies are complemented by lower-resolution structural biology approaches to generate valuable structural information. Structural analyses will subsequently be the basis for designing experiments addressing functional questions using a blend of biochemical and cellular assays.

Movement is vital to all living organisms, from the transport of cellular organelles to the movement of entire organisms. Sarcomeres are the smallest contractile units of striated skeletal and heart muscles. Z-discs - the boundaries between the adjacent sarcomeres play pivotal roles in sustaining sarcomeric architecture, signalling, mechanosensing, and protein homeostasis. Mature Z-discs contain upwards of 50 different proteins and are regarded as one of the most complex macromolecular structures in biology. -Actinin is the major component of the Z-disc, where it cross-links actin filaments from neighbouring sarcomeres. Filamin C not only cross-links actin filaments but acts also as a mecanosensor for the force exerted on the Z-discs. The complex Z-disk interactome is further tuned by post-translational modifications, the best studied are phosphorylations. Our studies focused on the understanding of the impact of posttranslational modifications in filamin C domains 19-21, on the interaction with selected binding partners (FATZ-1 and Pgm5/aciculin), structural analysis of complexes of FATZ-1 with filamin C and -actinin-2, and on the structural and biochemical analysis of PGM5/aciculin. Interestingly, found that phosphorylations notably increase the capacity of the filamin C to refold and we hypothesize that this property might be important for the increased capacity of the protein to recover from mechanical strain and mechanical damage during muscle contraction. We also found that negatively phosphorylation regulates filamin C interactions with FATZ-1. Our structural studies revolved around complexes of FATZ-1 with filamin C and -actinin-2 and phosphoglucomutase -5/aciculin, that was recently discovered to bind to Z-disk proteins. We determined the crystal structures of FATZ-1 in complex with filamin C (domain 21) and with -actinin-2 (central rod domain). These are the first crystal structures of intrinsically disordered Z-disk protein FAZT-1 with two of its major binding partners, which shed light on how these proteins interact at the atomic level. Furthermore, our biochemical and structural analysis of phosphoglucomutase 5 (PGM5)/aciculin showed that the protein has enzymatic activity and that the active site is structurally different from canonical phosphoglucomutases. These results change the paradigm regarding PGM5/aciculin role in the Z-disks from a purely structural protein to a scaffolding enzyme potentially regulated by interaction partners.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Matthias Wilmanns, European Molecular Biology Laboratory Hamburg - Germany
  • Frangakis Achilleas, Johann Wolfgang Goethe Universität Frankfurt am Main - Germany
  • Matthias Rief, Technische Universität München - Germany
  • Dieter O. Fürst, Universität Bonn - Germany
  • Jörg Höhfeld, Universität Bonn - Germany
  • Bettina Warscheid, Universität Freiburg - Germany
  • Norbert Frey, Universitätsklinikum Heidelberg - Germany

Research Output

  • 995 Citations
  • 31 Publications
  • 2 Datasets & models
  • 6 Fundings
Publications
  • 2021
    Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin
    DOI 10.3204/pubdb-2021-04332
    Type Other
    Author Kostan J
    Link Publication
  • 2021
    Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin
    DOI 10.3204/pubdb-2021-04331
    Type Other
    Author Kostan J
    Link Publication
  • 2020
    Title Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
    DOI 10.3204/pubdb-2020-05031
    Type Other
    Author Grishkovskaya I
    Link Publication
  • 2020
    Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin
    DOI 10.1101/2020.09.25.310029
    Type Preprint
    Author Kostan J
    Pages 2020.09.25.310029
    Link Publication
  • 2020
    Title Calcium modulates the domain flexibility and function of an a-actinin similar to the ancestral a-actinin
    DOI 10.1073/pnas.1917269117
    Type Journal Article
    Author Pinotsis N
    Journal Proceedings of the National Academy of Sciences
    Pages 22101-22112
    Link Publication
  • 2020
    Title Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
    DOI 10.1038/s42003-020-0982-5
    Type Journal Article
    Author Reimann L
    Journal Communications Biology
    Pages 253
    Link Publication
  • 2020
    Title X-ray–induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner
    DOI 10.1074/jbc.ra120.014087
    Type Journal Article
    Author Pfanzagl V
    Journal Journal of Biological Chemistry
    Pages 13488-13501
    Link Publication
  • 2020
    Title PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC
    DOI 10.1101/2020.02.11.943159
    Type Preprint
    Author Appel L
    Pages 2020.02.11.943159
    Link Publication
  • 2020
    Title PHF3 Regulates Neuronal Gene Expression Through the New Pol II CTD Reader Domain SPOC
    DOI 10.2139/ssrn.3543843
    Type Preprint
    Author Appel L
    Link Publication
  • 2021
    Title PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
    DOI 10.1038/s41467-021-26360-2
    Type Journal Article
    Author Appel L
    Journal Nature Communications
    Pages 6078
    Link Publication
  • 2022
    Title A Potential Citrate Shunt in Erythrocytes of PKAN Patients Caused by Mutations in Pantothenate Kinase 2
    DOI 10.3390/biom12020325
    Type Journal Article
    Author Werning M
    Journal Biomolecules
    Pages 325
    Link Publication
  • 2020
    Title In-depth interrogation of protein thermal unfolding data with MoltenProt
    DOI 10.1002/pro.3986
    Type Journal Article
    Author Kotov V
    Journal Protein Science
    Pages 201-217
    Link Publication
  • 2020
    Title Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
    DOI 10.1371/journal.pone.0242677
    Type Journal Article
    Author Sajko S
    Journal PLOS ONE
    Link Publication
  • 2021
    Title Molecular basis of F-actin regulation and sarcomere assembly via myotilin
    DOI 10.1371/journal.pbio.3001148
    Type Journal Article
    Author Kostan J
    Journal PLOS Biology
    Link Publication
  • 2021
    Title Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with a-actinin
    DOI 10.1126/sciadv.abg7653
    Type Journal Article
    Author Sponga A
    Journal Science Advances
    Link Publication
  • 2021
    Title FLNC-Associated Myofibrillar Myopathy
    DOI 10.1212/nxg.0000000000000590
    Type Journal Article
    Author Kley R
    Journal Neurology: Genetics
    Link Publication
  • 2017
    Title Human cytomegalovirus phosphoproteins are hypophosphorylated and intrinsically disordered
    DOI 10.1099/jgv.0.000675
    Type Journal Article
    Author Rieder F
    Journal Journal of General Virology
    Pages 471-485
    Link Publication
  • 2017
    Title Conformational plasticity and evolutionary analysis of the myotilin tandem Ig domains
    DOI 10.1038/s41598-017-03323-6
    Type Journal Article
    Author Puž V
    Journal Scientific Reports
    Pages 3993
    Link Publication
  • 2017
    Title a-Actinin/titin interaction: A dynamic and mechanically stable cluster of bonds in the muscle Z-disk
    DOI 10.1073/pnas.1612681114
    Type Journal Article
    Author Grison M
    Journal Proceedings of the National Academy of Sciences
    Pages 1015-1020
    Link Publication
  • 2017
    Title Deciphering the BAR code of membrane modulators
    DOI 10.1007/s00018-017-2478-0
    Type Journal Article
    Author Salzer U
    Journal Cellular and Molecular Life Sciences
    Pages 2413-2438
    Link Publication
  • 2015
    Title Structural Insights into Ca2+-Calmodulin Regulation of Plectin 1a-Integrin ß4 Interaction in Hemidesmosomes
    DOI 10.1016/j.str.2015.01.011
    Type Journal Article
    Author Song J
    Journal Structure
    Pages 558-570
    Link Publication
  • 2016
    Title The sarcomeric cytoskeleton: from molecules to motion
    DOI 10.1242/jeb.124941
    Type Journal Article
    Author Gautel M
    Journal Journal of Experimental Biology
    Pages 135-145
    Link Publication
  • 2019
    Title HspB1 phosphorylation regulates its intramolecular dynamics and mechanosensitive molecular chaperone interaction with filamin C
    DOI 10.1126/sciadv.aav8421
    Type Journal Article
    Author Collier M
    Journal Science Advances
    Link Publication
  • 2019
    Title Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
    DOI 10.1101/826180
    Type Preprint
    Author Sajko S
    Pages 826180
    Link Publication
  • 2014
    Title Direct interaction of actin filaments with F-BAR protein pacsin2
    DOI 10.15252/embr.201439267
    Type Journal Article
    Author Kostan J
    Journal The EMBO Reports
    Pages 1154-1162
    Link Publication
  • 2014
    Title The Structure and Regulation of Human Muscle -Actinin
    DOI 10.3929/ethz-b-000095992
    Type Other
    Author Pinotsis
    Link Publication
  • 2014
    Title The Center for Optimized Structural Studies (COSS) platform for automation in cloning, expression, and purification of single proteins and protein–protein complexes
    DOI 10.1007/s00726-014-1699-x
    Type Journal Article
    Author Mlynek G
    Journal Amino Acids
    Pages 1565-1582
  • 2014
    Title The Structure and Regulation of Human Muscle a-Actinin
    DOI 10.1016/j.cell.2014.10.056
    Type Journal Article
    Author De Almeida Ribeiro E
    Journal Cell
    Pages 1447-1460
    Link Publication
  • 2016
    Title Congenital macrothrombocytopenia-linked mutations in the actin-binding domain of a-actinin-1 enhance F-actin association
    DOI 10.1002/1873-3468.12101
    Type Journal Article
    Author Murphy A
    Journal FEBS Letters
    Pages 685-695
    Link Publication
  • 2016
    Title Structure and calcium-binding studies of calmodulin-like domain of human non-muscle a-actinin-1
    DOI 10.1038/srep27383
    Type Journal Article
    Author Drmota Prebil S
    Journal Scientific Reports
    Pages 27383
    Link Publication
  • 2018
    Title Phosphorylation of HspB1 regulates its mechanosensitive molecular chaperone interaction with native filamin C
    DOI 10.1101/325712
    Type Preprint
    Author Collier M
    Pages 325712
    Link Publication
Datasets & models
  • 2016 Link
    Title Holo form of Calmodulin-Like Domain of Human Non-Muscle alpha-actinin 1
    DOI 10.13018/bmr25870
    Type Database/Collection of data
    Public Access
    Link Link
  • 2016 Link
    Title Apo form of Calmodulin-Like Domain of Human Non-Muscle alpha-actinin 1
    DOI 10.13018/bmr25871
    Type Database/Collection of data
    Public Access
    Link Link
Fundings
  • 2018
    Title Research Platform University of Vienna Comammox
    Type Research grant (including intramural programme)
    Start of Funding 2018
    Funder University of Vienna
  • 2016
    Title FWF Doctoral Program Plus Integrative Structural Biology
    Type Research grant (including intramural programme)
    Start of Funding 2016
    Funder Austrian Science Fund (FWF)
  • 2019
    Title Austrian-Slovak Interreg Project
    Type Research grant (including intramural programme)
    Start of Funding 2019
    Funder European Commission
  • 2018
    Title Vienna Science and Technology Fund
    Type Research grant (including intramural programme)
    Start of Funding 2018
    Funder Vienna Science and Technology Fund
  • 2016
    Title An integrated approach to the muscle Z-disk: from atomic structure to human disease
    Type Research grant (including intramural programme)
    Start of Funding 2016
    Funder Wellcome Trust
  • 2017
    Title High-Content Structural Biology and Biotechnology
    Type Research grant (including intramural programme)
    Start of Funding 2017
    Funder Federal Ministry of Science, Research and Economy (BMWFW)

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+43 1 505 67 40

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