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Development of genetically encoded fluorescent K+ probes

Development of genetically encoded fluorescent K+ probes

Roland Malli (ORCID: 0000-0001-6327-8729)
  • Grant DOI 10.55776/I3716
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start October 1, 2018
  • End December 31, 2022
  • Funding amount € 389,337
  • Project website

DACH: Österreich - Deutschland - Schweiz

Disciplines

Biology (20%); Medical-Theoretical Sciences, Pharmacy (80%)

Keywords

    Genetically Encoded Fret Probes, Fluorescence Micoscopy, Live-Cell Imaging, Intravital Microscopy, Potassium Ion Signaling, Biosensors And Biotechnology

Abstract Final report

Potassium ions (K+) accumulate within cells, the smallest units of life - a process, which is essential for the regulation of cellular key functions. K+ fluxes across the plasma membranes of excitable cells such as neurons, muscle- and gland cells are vital for their specific cell functions. Hence, an imbalance of the K+ homeostasis has profound implication at the cellular- and organismal level and is associated with a plethora of diseases including cardio-vascular-, neurological-, muscle-, and metabolic disorders as well as cancer. It is speculated that also within a cell K+ is unequally distributed among cellular compartments and respective intracellular K+ fluxes fundamentally contribute to cell functions and dysfunctions. Furthermore it is hypothesized that tiniest subcellular K+ signals have huge implications in cell physiology and pathology. However, our understanding in this regard is very limited due to the lack of suitable methods that allow monitoring K+ fluxes with high spatial and temporal resolution. This research project aims to develop novel fluorescent K+ biosensors that can be targeted to cellular organelles and subdomains of cells. Accordingly, the novel fluorescent probes will enable real-time recordings of local subcellular K+ signals and, thus, will allow investigating intracellular K+ fluxes to gain our understanding of the signaling role of this fundamental ion in health and diseases.

In this project, we have developed novel fluorescent biosensors that enable precise and sensitive measurement of changes in the concentration of potassium ions ([K+]) in living cells. These nanomachines consist of fluorescent proteins and can be used in cells as well as on cell surfaces and in body fluids. By using these sensors, local changes in [K+] can be detected with high precision for the first time and examined for their effects on signaling and cell metabolism. Such changes are important in neurological defects, metabolic diseases and cancer. By using these sensors, we can learn more about how these diseases work and hopefully find better ways to treat them in the future.

Research institution(s)
  • Medizinische Universität Graz - 100%
International project participants
  • Markus Rehberg, Klinikum der Universität München - Germany
  • Nikolaus Plesnila, Klinikum der Universität München - Germany

Research Output

  • 561 Citations
  • 33 Publications
  • 1 Patents
  • 1 Spinouts
  • 3 Methods & Materials
  • 1 Disseminations
  • 4 Scientific Awards
  • 1 Fundings
Publications
  • 2023
    Title Probing Intracellular Potassium Dynamics in Neurons with the Genetically Encoded Sensor lc-LysM GEPII 1.0 in vitro and in vivo
    DOI 10.21203/rs.3.rs-3715395/v1
    Type Preprint
    Author Groschup B
    Link Publication
  • 2023
    Title Annexin-A5 is fundamental for VDAC1-dependent mitochondrial Ca2+ homeostasis and determines the susceptibility to apoptosis.
    DOI 10.21203/rs.3.rs-3338004/v1
    Type Preprint
    Author Graier W
    Link Publication
  • 2024
    Title mitoBKCa is functionally expressed in murine and human breast cancer cells and potentially contributes to metabolic reprogramming
    DOI 10.7554/elife.92511.3
    Type Journal Article
    Author Bischof H
    Journal eLife
    Link Publication
  • 2022
    Title TRPC3 governs the spatiotemporal organization of cellular Ca2+ signatures by functional coupling to IP3 receptors
    DOI 10.1016/j.ceca.2022.102670
    Type Journal Article
    Author Curcic S
    Journal Cell Calcium
    Pages 102670
  • 2022
    Title Citrin mediated metabolic rewiring in response to altered basal subcellular Ca2+ homeostasis
    DOI 10.1038/s42003-022-03019-2
    Type Journal Article
    Author Koshenov Z
    Journal Communications Biology
    Pages 76
    Link Publication
  • 2022
    Title Salivary potassium measured by genetically encoded potassium ion indicators as a surrogate for plasma potassium levels in hemodialysis patients—a proof-of-concept study
    DOI 10.1093/ndt/gfac195
    Type Journal Article
    Author Deak A
    Journal Nephrology Dialysis Transplantation
    Pages 757-763
  • 2022
    Title Sigma-1 Receptor Modulation by Ligands Coordinates Cancer Cell Energy Metabolism
    DOI 10.3390/biom12060762
    Type Journal Article
    Author Oflaz F
    Journal Biomolecules
    Pages 762
    Link Publication
  • 2025
    Title Presenilin-1 controls glucose metabolism and identity of pancreatic beta cells
    DOI 10.1101/2025.09.05.674426
    Type Preprint
    Author Koshenov Z
    Pages 2025.09.05.674426
    Link Publication
  • 2025
    Title Annexin A5 controls VDAC1-dependent mitochondrial Ca2+ homeostasis and determines cellular susceptibility to apoptosis
    DOI 10.1038/s44318-025-00454-9
    Type Journal Article
    Author Oflaz F
    Journal The EMBO Journal
    Pages 3413-3447
    Link Publication
  • 2024
    Title Probing intracellular potassium dynamics in neurons with the genetically encoded sensor lc-LysM GEPII 1.0 in vitro and in vivo
    DOI 10.1038/s41598-024-62993-1
    Type Journal Article
    Author Groschup B
    Journal Scientific Reports
    Pages 13753
    Link Publication
  • 2022
    Title MICU1 controls spatial membrane potential gradients and guides Ca2+ fluxes within mitochondrial substructures
    DOI 10.1038/s42003-022-03606-3
    Type Journal Article
    Author Gottschalk B
    Journal Communications Biology
    Pages 649
    Link Publication
  • 2019
    Title Tracking intra- and inter-organelle signaling of mitochondria
    DOI 10.3929/ethz-b-000379999
    Type Other
    Author Madreiter-Sokolowski
    Link Publication
  • 2019
    Title Glycogen Synthase Kinase 3 Beta Controls Presenilin-1-Mediated Endoplasmic Reticulum Ca2+ Leak Directed to Mitochondria in Pancreatic Islets and beta-Cells
    DOI 10.33594/000000005
    Type Journal Article
    Author Klec C
    Journal Cellular Physiology & Biochemistry
    Pages 57-75
    Link Publication
  • 2019
    Title Purification and Application of Genetically Encoded Potassium Ion Indicators for Quantification of Potassium Ion Concentrations within Biological Samples
    DOI 10.1002/cpch.71
    Type Journal Article
    Author Bischof H
    Journal Current Protocols in Chemical Biology
    Link Publication
  • 2019
    Title Live-Cell Imaging of Physiologically Relevant Metal Ions Using Genetically Encoded FRET-Based Probes
    DOI 10.3390/cells8050492
    Type Journal Article
    Author Bischof H
    Journal Cells
    Pages 492
    Link Publication
  • 2021
    Title A Co-Culture-Based Multiparametric Imaging Technique to Dissect Local H2O2 Signals with Targeted HyPer7
    DOI 10.3390/bios11090338
    Type Journal Article
    Author Secilmis M
    Journal Biosensors
    Pages 338
    Link Publication
  • 2021
    Title Unveiling the K+-sensitivity of cell metabolism using genetically encoded, FRET-based K+, glucose, and ATP biosensors
    DOI 10.1016/j.xpro.2021.100843
    Type Journal Article
    Author Bischof H
    Journal STAR Protocols
    Pages 100843
    Link Publication
  • 2021
    Title Sigma-1 Receptor Promotes Mitochondrial Bioenergetics by Orchestrating ER Ca2+ Leak during Early ER Stress
    DOI 10.3390/metabo11070422
    Type Journal Article
    Author Koshenov Z
    Journal Metabolites
    Pages 422
    Link Publication
  • 2021
    Title Near-UV Light Induced ROS Production Initiates Spatial Ca2+ Spiking to Fire NFATc3 Translocation
    DOI 10.3390/ijms22158189
    Type Journal Article
    Author Oflaz F
    Journal International Journal of Molecular Sciences
    Pages 8189
    Link Publication
  • 2021
    Title Investigating the K+ sensitivity of cellular metabolism by extracellular flux analysis
    DOI 10.1016/j.xpro.2021.100876
    Type Journal Article
    Author Burgstaller S
    Journal STAR Protocols
    Pages 100876
    Link Publication
  • 2021
    Title Immobilization of Recombinant Fluorescent Biosensors Permits Imaging of Extracellular Ion Signals
    DOI 10.1021/acssensors.1c01369
    Type Journal Article
    Author Burgstaller S
    Journal ACS Sensors
    Pages 3994-4000
    Link Publication
  • 2021
    Title Dynamic Control of Mitochondrial Ca2+ Levels as a Survival Strategy of Cancer Cells
    DOI 10.3389/fcell.2021.614668
    Type Journal Article
    Author Madreiter-Sokolowski C
    Journal Frontiers in Cell and Developmental Biology
    Pages 614668
    Link Publication
  • 2021
    Title Potassium ions promote hexokinase-II dependent glycolysis
    DOI 10.1016/j.isci.2021.102346
    Type Journal Article
    Author Bischof H
    Journal iScience
    Pages 102346
    Link Publication
  • 2020
    Title Yes (again) to local NO
    DOI 10.1038/s41589-020-0552-7
    Type Journal Article
    Author Eroglu E
    Journal Nature Chemical Biology
    Pages 606-607
  • 2020
    Title Metabolic Profiling of Single Cancer Cells Using Mitochondrial ATP Probes
    DOI 10.1016/j.xpro.2020.100048
    Type Journal Article
    Author Rauter T
    Journal STAR Protocols
    Pages 100048
    Link Publication
  • 2020
    Title ER-to-Golgi Transport in HeLa Cells Displays High Resilience to Ca2+ and Energy Stresses
    DOI 10.3390/cells9102311
    Type Journal Article
    Author Rauter T
    Journal Cells
    Pages 2311
    Link Publication
  • 2023
    Title mitoBKCa is functionally expressed in murine and human breast cancer cells and potentially contributes to metabolic reprogramming
    DOI 10.1101/2023.10.02.560571
    Type Preprint
    Author Bischof H
    Pages 2023.10.02.560571
    Link Publication
  • 2018
    Title The enigmatic ATP supply of the endoplasmic reticulum
    DOI 10.1111/brv.12469
    Type Journal Article
    Author Depaoli M
    Journal Biological Reviews
    Pages 610-628
    Link Publication
  • 2019
    Title Mitochondrial–Endoplasmic Reticulum Interplay: A Lifelong On–Off Relationship?
    DOI 10.1177/2515256419861227
    Type Journal Article
    Author Madreiter-Sokolowski C
    Journal Contact
    Pages 2515256419861227
    Link Publication
  • 2019
    Title pH-Lemon, a Fluorescent Protein-Based pH Reporter for Acidic Compartments
    DOI 10.1021/acssensors.8b01599
    Type Journal Article
    Author Burgstaller S
    Journal ACS Sensors
    Pages 883-891
    Link Publication
  • 2019
    Title Visualization of Sirtuin 4 Distribution between Mitochondria and the Nucleus, Based on Bimolecular Fluorescence Self-Complementation
    DOI 10.3390/cells8121583
    Type Journal Article
    Author Ramadani-Muja J
    Journal Cells
    Pages 1583
    Link Publication
  • 2017
    Title Development, characterization and application of novel genetically encoded, fluorescent potassium ion indicators
    Type PhD Thesis
    Author Helmut Bischof
  • 2018
    Title Edible insects – defining knowledge gaps in biological and ethical considerations of entomophagy
    DOI 10.1080/10408398.2018.1468731
    Type Journal Article
    Author Pali-Schöll I
    Journal Critical Reviews in Food Science and Nutrition
    Pages 2760-2771
    Link Publication
  • 2025
    Title Tracking Intracellular Labile Iron with a Genetically Encoded Fluorescent Reporter System Based on Protein Stability
    DOI 10.1021/acssensors.5c01165
    Type Journal Article
    Author Akyol A
    Journal ACS Sensors
    Pages 5854-5861
    Link Publication
  • 2019
    Title Tracking intra- and inter-organelle signaling of mitochondria
    DOI 10.1111/febs.15103
    Type Journal Article
    Author Madreiter-Sokolowski C
    Journal The FEBS Journal
    Pages 4378-4401
    Link Publication
  • 2019
    Title Presenilin-1 Established ER-Ca2+ Leak: a Follow Up on Its Importance for the Initial Insulin Secretion in Pancreatic Islets and ß-Cells Upon Elevated Glucose
    DOI 10.33594/000000158
    Type Journal Article
    Author Klec C
    Journal Cellular Physiology & Biochemistry
    Pages 573-586
    Link Publication
Patents
  • 2018 Patent Id: CA3062431
    Title GENETICALLY ENCODED POTASSIUM ION INDICATORS
    Type Patent application published
    patentId CA3062431
    Website Link
Spinouts
  • 2016 Link
    Title NGFI GmbH
    Link Link
Methods & Materials
  • 2019 Link
    Title pH-Lemon
    Type Technology assay or reagent
    Public Access
    Link Link
  • 2017 Link
    Title Genetically encoded fluorescent potassium ion indicators (GEPIIs)
    Type Technology assay or reagent
    Public Access
    Link Link
  • 0 Link
    Title mito-STAR
    Type Technology assay or reagent
    Link Link
Disseminations
  • 2019
    Title Lecture followed by discussions and cooperation talks
    Type A talk or presentation
Scientific Awards
  • 2021
    Title Invitation as a speaker at the international EUR BIOPHYS conference
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2019
    Title Award as inventor of SALI-LUX
    Type Research prize
    Level of Recognition Regional (any country)
  • 2022
    Title Guest Editor for FRBM
    Type Appointed as the editor/advisor to a journal or book series
    Level of Recognition Continental/International
  • 2022
    Title Best Poster Prize to JP
    Type Poster/abstract prize
    Level of Recognition Continental/International
Fundings
  • 2021
    Title Targeting intra- and extracellular K+ in cancer
    Type Other
    Start of Funding 2021
    Funder Austrian Science Fund (FWF)

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Georg-Coch-Platz 2
(Entrance Wiesingerstraße 4)
1010 Vienna

office(at)fwf.ac.at
+43 1 505 67 40

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