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Variational Modeling of Molecular Geometries

Variational Modeling of Molecular Geometries

Ulisse Stefanelli (ORCID: 0000-0002-3969-2716)
  • Grant DOI 10.55776/I4354
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start April 1, 2020
  • End March 31, 2024
  • Funding amount € 358,218

DACH: Österreich - Deutschland - Schweiz

Disciplines

Mathematics (100%)

Keywords

    Discrete To Continuum, Variational Methods, Crystallization, Local And Global Geometries, Scale Effects, Molecular Mechanics

Abstract Final report

Wider research context: Driven by their fascinating electronic and mechanical properties, research on low-dimensional materials (such as graphene) is exponentially growing. New findings are emerging at an always increasing pace, ranging from fundamental concepts to applications. In contrast to the wealth of experimental and numerical evidence currently available, rigorous mathematical results on local and global crystalline geometries are scant and the study of the emergence of different scales within molecular structures is still in its infancy. Objectives: We focus on the variational modeling of molecular geometries within the frame of Molecular Mechanics: effective configurations are identified as minimizers of classical configurational potentials. The project aims at obtaining new mathematical understanding of molecular geometries and at investigating the emergence of scale effects across scales. Approach: Ranging from the nano to the macroscale, we address crystallization for molecular compounds, the description of local molecular features including defects and rigidity, the occurrence of global geometric characteristics such as flatness in 3d and stratification, and the passage from discrete to continuum theories. Grounded on variational methods for atomistic models, the methodology will integrate techniques from discrete mathematics and stochastics as well. Innovation: The project targets a number of hot research fronts in Materials Science from the rigorous mathematical standpoint. Compared with simulations, the theoretical approach bears the advantage of being system-size independent, a crucial asset for investigating effects across scales. Researchers involved: The new international research team between Münster and Vienna will be coordinated by Manuel Friedrich and Ulisse Stefanelli and will benefit from a network of local and international collaborators, including experimental and computational groups. Keywords: Variational methods, Molecular Mechanics, crystallization, local and global geometries, scale effects, discrete to continuum.

Driven by their fascinating electronic and mechanical properties, research on low-dimensional materials (such as graphene) is exponentially growing. New findings are emerging at an always increasing pace, ranging from fundamental concepts to applications. In contrast to the wealth of experimental and numerical evidence currently available, rigorous mathematical results on local and global crystalline geometries are scant and the study of the emergence of different scales within molecular structures is still in its infancy. In this project, we have focused on the variational modeling of molecular geometries within the frame of Molecular Mechanics in order to deepen the mathematical understanding of molecular ge- ometries and to investigate the emergence of scale effects across scales. Ranging from the nano to the macroscale, we have addressed crystallization for molecular compounds, the description of local molecular structures including defects, the occurrence of global geometric characteristics such as nonflatness in 3d, and the passage from discrete-to-continuum theories. The methodology was mainly based on variational techniques for atomistic models, but integrated also methods from graph theory, combinatorics, and discrete differential geometry. The innovative idea of the project consisted in tackling challenging problems in Materials Science from a rigorous mathematical standpoint. Compared with simulations, the theoretical approach bears the advantage of being system-size independent, a crucial asset for investigating effects across scales.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Manuel Friedrich, Universität Münster - Germany

Research Output

  • 77 Citations
  • 66 Publications
  • 1 Disseminations
  • 6 Scientific Awards
  • 1 Fundings
Publications
  • 2025
    Title Discrete-to-continuum linearization in atomistic dynamics
    DOI 10.3934/dcds.2024115
    Type Journal Article
    Author Friedrich M
    Journal Discrete and Continuous Dynamical Systems
  • 2021
    Title How well-conditioned can the eigenvector problem be?
    DOI 10.1090/mcom/3706
    Type Journal Article
    Author Beltrán C
    Journal Mathematics of Computation
    Pages 1237-1245
    Link Publication
  • 2023
    Title Special issue on variational models for discrete systems editorial
    DOI 10.1016/j.na.2022.113208
    Type Journal Article
    Author Braides A
    Journal Nonlinear Analysis
  • 2023
    Title A model of gravitational differentiation of compressible self-gravitating planets
    DOI 10.20347/wias.preprint.3015
    Type Other
    Author Mielke A
    Link Publication
  • 2023
    Title The Anzellotti-Gauss-Green formula and least gradient functions in metric measure spaces
    DOI 10.1142/s021919972350027x
    Type Journal Article
    Author Górny W
    Journal Communications in Contemporary Mathematics
  • 2023
    Title Applications of optimal transport methods in the least gradient problem
    DOI 10.2422/2036-2145.202105_049
    Type Journal Article
    Author Górny W
    Journal ANNALI SCUOLA NORMALE SUPERIORE - CLASSE DI SCIENZE
  • 2023
    Title A characterization of $\ell_1$ double bubbles with general interface interaction
    DOI 10.48550/arxiv.2311.07782
    Type Preprint
    Author Friedrich M
    Link Publication
  • 2023
    Title Rate-independent stochastic evolution equations: Parametrized solutions
    DOI 10.1016/j.jfa.2023.110102
    Type Journal Article
    Author Scarpa L
    Journal Journal of Functional Analysis
  • 2024
    Title Nonlocal-to-local limit in linearized viscoelasticity
    DOI 10.2478/caim-2024-0001
    Type Journal Article
    Author Friedrich M
    Journal Communications in Applied and Industrial Mathematics
  • 2024
    Title Analysis of a combined Filtered/phase-field approach to topology optimization in elasticit
    DOI 10.48550/arxiv.2401.12675
    Type Preprint
    Author Auricchio F
    Link Publication
  • 2024
    Title Functions of Least Gradient
    DOI 10.1007/978-3-031-51881-2
    Type Book
    Author Górny W
    Publisher Springer Nature Switzerland
  • 2023
    Title Weak solutions to gradient flows in metric measure spaces
    DOI 10.1002/pamm.202200099
    Type Journal Article
    Author Górny W
    Journal PAMM
  • 2023
    Title The double-bubble problem on the square lattice
    DOI 10.4171/ifb/510
    Type Journal Article
    Author Friedrich M
    Journal Interfaces and Free Boundaries, Mathematical Analysis, Computation and Applications
  • 2023
    Title Curvature-dependent Eulerian interfaces in elastic solids
    DOI 10.48550/arxiv.2305.02168
    Type Other
    Author Brazda K
    Link Publication
  • 2023
    Title A model of gravitational differentiation of compressible self-gravitating planets
    DOI 10.48550/arxiv.2305.06232
    Type Preprint
    Author Mielke A
    Link Publication
  • 2023
    Title Discrete-to-continuum linearization in atomistic dynamics
    DOI 10.48550/arxiv.2305.08469
    Type Preprint
    Author Friedrich M
    Link Publication
  • 2023
    Title Optimality of the triangular lattice for Lennard-Jones type lattice energies: a computer-assisted method
    DOI 10.1088/1751-8121/acc21d
    Type Journal Article
    Author Bétermin L
    Journal Journal of Physics A: Mathematical and Theoretical
  • 2023
    Title Curvature-dependent Eulerian interfaces in elastic solids.
    DOI 10.1098/rsta.2022.0366
    Type Journal Article
    Author Brazda K
    Journal Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
    Pages 20220366
  • 2023
    Title Variational models for biological membranes
    Type PhD Thesis
    Author K. Brazda
  • 2024
    Title Variational modeling of molecular geometries
    Type PhD Thesis
    Author M. Seitz
  • 2024
    Title Viscosity Solutions for Nonlocal Equations with Space-Dependent Operators
    DOI 10.1137/22m1511503
    Type Journal Article
    Author Buccheri S
    Journal SIAM Journal on Mathematical Analysis
  • 2024
    Title Analysis of a Combined Filtered/Phase-Field Approach to Topology Optimization in Elasticity
    DOI 10.1007/s00245-024-10104-x
    Type Journal Article
    Author Auricchio F
    Journal Applied Mathematics & Optimization
  • 2022
    Title Tilings with Nonflat Squares: A Characterization
    DOI 10.1007/s00032-022-00350-5
    Type Journal Article
    Author Friedrich M
    Journal Milan Journal of Mathematics
    Pages 131-175
    Link Publication
  • 2022
    Title Equilibria of Charged Hyperelastic Solids
    DOI 10.1137/21m1413286
    Type Journal Article
    Author Davoli E
    Journal SIAM Journal on Mathematical Analysis
    Pages 1470-1487
    Link Publication
  • 2022
    Title A minimizing-movements approach to GENERIC systems
    DOI 10.3934/mine.2022005
    Type Journal Article
    Author Jüngel A
    Journal Mathematics in Engineering
    Pages 1-18
    Link Publication
  • 2022
    Title Viscoelastodynamics of swelling porous solids at large strains by an Eulerian approach
    DOI 10.48550/arxiv.2201.10959
    Type Preprint
    Author Roubicek T
  • 2022
    Title Doubly nonlinear stochastic evolution equations II
    DOI 10.1007/s40072-021-00229-3
    Type Journal Article
    Author Scarpa L
    Journal Stochastics and Partial Differential Equations: Analysis and Computations
    Pages 307-347
    Link Publication
  • 2022
    Title Existence results for a morphoelastic model
    DOI 10.1002/zamm.202100478
    Type Journal Article
    Author Davoli E
    Journal ZAMM - Journal of Applied Mathematics and Mechanics / Zeitschrift für Angewandte Mathematik und
    Link Publication
  • 2022
    Title Viscosity solutions for nonlocal equations with space-dependent operators
    DOI 10.48550/arxiv.2205.15362
    Type Preprint
    Author Buccheri S
  • 2022
    Title A new minimizing-movements scheme for curves of maximal slope
    DOI 10.1051/cocv/2022028
    Type Journal Article
    Author Stefanelli U
    Journal ESAIM: Control, Optimisation and Calculus of Variations
    Pages 59
    Link Publication
  • 2022
    Title Topology optimization for quasistatic elastoplasticity
    DOI 10.1051/cocv/2022037
    Type Journal Article
    Author Almi S
    Journal ESAIM: Control, Optimisation and Calculus of Variations
    Pages 47
    Link Publication
  • 2021
    Title A finite-strain model for incomplete damage in elastoplastic materials
    DOI 10.1016/j.cma.2020.113571
    Type Journal Article
    Author Melching D
    Journal Computer Methods in Applied Mechanics and Engineering
    Pages 113571
    Link Publication
  • 2021
    Title A new minimizing-movements scheme for curves of maximal slope
    DOI 10.48550/arxiv.2103.00846
    Type Preprint
    Author Stefanelli U
  • 2021
    Title Existence results for a morphoelastic model
    DOI 10.48550/arxiv.2110.05566
    Type Preprint
    Author Davoli E
  • 2021
    Title Stability of Z2 configurations in 3D
    DOI 10.1088/1361-6544/ac3383
    Type Journal Article
    Author Bétermin L
    Journal Nonlinearity
    Pages 8392-8413
    Link Publication
  • 2021
    Title Optimal transport approach to Sobolev regularity of solutions to the weighted least gradient problem
    DOI 10.48550/arxiv.2112.13920
    Type Preprint
    Author Dweik S
  • 2021
    Title Lattice ground states for embedded-atom models in 2D and 3D
    DOI 10.1007/s11005-021-01446-6
    Type Journal Article
    Author Bétermin L
    Journal Letters in Mathematical Physics
    Pages 107
    Link Publication
  • 2021
    Title Tilings with nonflat squares: a characterization
    DOI 10.48550/arxiv.2108.01954
    Type Preprint
    Author Friedrich M
  • 2021
    Title Spectral optimization of inhomogeneous plates
    DOI 10.48550/arxiv.2107.11207
    Type Preprint
    Author Davoli E
  • 2021
    Title Rate-independent stochastic evolution equations: parametrized solutions
    DOI 10.48550/arxiv.2109.15208
    Type Preprint
    Author Scarpa L
  • 2021
    Title The Energy-Dissipation Principle for stochastic parabolic equations
    DOI 10.48550/arxiv.2109.05882
    Type Preprint
    Author Scarpa L
  • 2021
    Title The double-bubble problem on the square lattice
    DOI 10.48550/arxiv.2109.01697
    Type Preprint
    Author Friedrich M
  • 2020
    Title Topology optimization for quasistatic elastoplasticity
    DOI 10.48550/arxiv.2012.03764
    Type Preprint
    Author Almi S
  • 2020
    Title An alternative proof of well-posedness of stochastic evolution equations in the variational setting
    DOI 10.48550/arxiv.2009.09700
    Type Preprint
    Author Marinelli C
  • 2020
    Title Doubly nonlinear stochastic evolution equations II
    DOI 10.48550/arxiv.2009.08209
    Type Preprint
    Author Scarpa L
  • 2020
    Title Stability of $\mathbb{Z}^2$ configurations in 3D
    DOI 10.48550/arxiv.2009.11503
    Type Preprint
    Author Bétermin L
  • 2020
    Title Ripples in Graphene: A Variational Approach
    DOI 10.1007/s00220-020-03869-z
    Type Journal Article
    Author Friedrich M
    Journal Communications in Mathematical Physics
    Pages 915-954
    Link Publication
  • 2020
    Title Stochastic PDEs via convex minimization
    DOI 10.1080/03605302.2020.1831017
    Type Journal Article
    Author Scarpa L
    Journal Communications in Partial Differential Equations
    Pages 66-97
    Link Publication
  • 2020
    Title Doubly nonlinear stochastic evolution equations
    DOI 10.1142/s0218202520500219
    Type Journal Article
    Author Scarpa L
    Journal Mathematical Models and Methods in Applied Sciences
    Pages 991-1031
    Link Publication
  • 2020
    Title Crystallization in a One-Dimensional Periodic Landscape
    DOI 10.1007/s10955-020-02537-9
    Type Journal Article
    Author Friedrich M
    Journal Journal of Statistical Physics
    Pages 485-501
  • 2020
    Title Stochastic PDEs via convex minimization
    DOI 10.48550/arxiv.2004.00337
    Type Preprint
    Author Scarpa L
  • 2020
    Title Equilibrium for Multiphase Solids with Eulerian Interfaces
    DOI 10.1007/s10659-020-09800-w
    Type Journal Article
    Author Grandi D
    Journal Journal of Elasticity
    Pages 409-431
  • 2021
    Title Equilibria of charged hyperelastic solids
    DOI 10.48550/arxiv.2104.08079
    Type Preprint
    Author Davoli E
  • 2021
    Title Variational resolution of outflow boundary conditions for incompressible Navier-Stokes
    DOI 10.48550/arxiv.2105.00296
    Type Preprint
    Author Bathory M
  • 2021
    Title On energy ground states among crystal lattice structures with prescribed bonds
    DOI 10.1088/1751-8121/abfc7e
    Type Journal Article
    Author Bétermin L
    Journal Journal of Physics A: Mathematical and Theoretical
    Pages 245202
    Link Publication
  • 2023
    Title Optimal Transport Approach to Sobolev Regularity of Solutions to the Weighted Least Gradient Problem
    DOI 10.1137/21m1468358
    Type Journal Article
    Author Dweik S
    Journal SIAM Journal on Mathematical Analysis
  • 2023
    Title Viscoelastodynamics of Swelling Porous Solids at Large Strains by an Eulerian Approach
    DOI 10.1137/22m1474229
    Type Journal Article
    Author Roubíček T
    Journal SIAM Journal on Mathematical Analysis
  • 2023
    Title Spectral Optimization of Inhomogeneous Plates
    DOI 10.1137/21m1435203
    Type Journal Article
    Author Davoli E
    Journal SIAM Journal on Control and Optimization
  • 2022
    Title On the p-Laplacian evolution equation in metric measure spaces
    DOI 10.1016/j.jfa.2022.109621
    Type Journal Article
    Author Górny W
    Journal Journal of Functional Analysis
    Pages 109621
    Link Publication
  • 2022
    Title The Neumann and Dirichlet problems for the total variation flow in metric measure spaces
    DOI 10.1515/acv-2021-0107
    Type Journal Article
    Author Górny W
    Journal Advances in Calculus of Variations
    Pages 131-164
    Link Publication
  • 2022
    Title Three-dimensional lattice ground states for Riesz and Lennard-Jones–type energies
    DOI 10.1111/sapm.12533
    Type Journal Article
    Author Bétermin L
    Journal Studies in Applied Mathematics
    Pages 69-91
    Link Publication
  • 2022
    Title The trace space of anisotropic least gradient functions depends on the anisotropy
    DOI 10.1007/s00208-022-02488-4
    Type Journal Article
    Author Górny W
    Journal Mathematische Annalen
    Pages 1343-1365
    Link Publication
  • 2022
    Title Variational resolution of outflow boundary conditions for incompressible Navier–Stokes
    DOI 10.1088/1361-6544/ac8fd8
    Type Journal Article
    Author Bathory M
    Journal Nonlinearity
    Pages 5553-5592
    Link Publication
  • 2020
    Title A finite-strain model for incomplete damage in elastoplastic materials
    DOI 10.48550/arxiv.2005.04965
    Type Preprint
    Author Melching D
  • 2020
    Title Equilibrium for multiphase solids with Eulerian interfaces
    DOI 10.48550/arxiv.2005.05663
    Type Preprint
    Author Grandi D
  • 2020
    Title A minimizing-movements approach to GENERIC systems
    DOI 10.48550/arxiv.2005.14437
    Type Preprint
    Author Jüngel A
Disseminations
  • 2023
    Title Public lecture Ghislieri 2023
    Type A talk or presentation
Scientific Awards
  • 2024
    Title Invited lecture Measure and Materials Warwick
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2024
    Title Invited lecture Nonlinear Parabolic PDEs Mittag-Leffler Institute
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2023
    Title Plenary lecture SIMAI 23 Matera
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2023
    Title Advances in the Calculus of Variations
    Type Appointed as the editor/advisor to a journal or book series
    Level of Recognition Continental/International
  • 2021
    Title Kazimierz Kuratowski award
    Type Research prize
    Level of Recognition National (any country)
  • 2020
    Title Chairman of the Sceitific Advisory Board of the Weierstrass Institute in Berlin
    Type Prestigious/honorary/advisory position to an external body
    Level of Recognition Continental/International
Fundings
  • 2022
    Title Inhomogeneous-growth problems including a linear-growth term
    Type Research grant (including intramural programme)
    Start of Funding 2022
    Funder Austrian Science Fund (FWF)

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